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PFAM Domains • Pyrenochaeta lycopersici MPI-SDFR-AT-0127 v1.0
Annotations/GenomesCocheC5_3Cocmi1Cucbe1Photr1Pyrly1Pyrsp1TotalAnnotation Description
PFAMs
9,2958,7108,8068,90112,72010,56158,993
1127 transmembrane receptor (rhodopsin family)
117 transmembrane receptor (Secretin family)
413948454852273ATPase family associated with various cellular activities (AAA)
423842435052267ABC transporter
44444424ATP synthase alpha/beta family, nucleotide-binding domain
112EGF-like domain
14141414161486Elongation factor Tu GTP binding domain
13151212121377Helix-loop-helix DNA-binding domain
33444321Hsp20/alpha crystallin family
878813852Hsp70 protein
88877846KH domain
11Ribulose bisphosphate carboxylase large chain, catalytic domain
111115SH2 domain
222324231423129SH3 domain
1010101091059Actin
887054653395405Ankyrin repeat
88374535PAN domain
77887845ADP-ribosylation factor family
22141112231294Eukaryotic aspartyl protease
44444525Cyclic nucleotide-binding domain
213Cytochrome b(C-terminal)/b6/petD
213Cytochrome b/b6/petB
1111116Cytochrome c
1112128Double-stranded RNA binding motif
1820171621790EF hand
1111154Fe-4S binding domain
43321316Fibronectin type III domain
1111116Globin
981313161675Glutathione S-transferase, C-terminal domain
1111116Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
889861150Homeodomain
44545527lactate/malate dehydrogenase, NAD binding domain
11Lectin C-type domain
54443424Myosin head (motor domain)
15612494106147141768Cytochrome P450
115104175129190166879Protein kinase domain
171419141922105Pyridine nucleotide-disulphide oxidoreductase
262325243124153Ras family
272523242628153Response regulator receiver domain
10443223RNase H
585864585556349RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
22334216Copper/zinc superoxide dismutase (SODC)
22222212Iron/manganese superoxide dismutases, alpha-hairpin domain
1212812181274Subtilase family
70667571117122521Sugar (and other) transporter
13111110151171Thioredoxin
23242215Trypsin
44445627Tubulin/FtsZ family, GTPase domain
54331420von Willebrand factor type A domain
686073764190408Zinc finger, C2H2 type
54566963457303Zinc finger, C3HC4 type (RING finger)
121652430Zinc knuckle
22222212Protein-tyrosine phosphatase
132125135137176212917short chain dehydrogenase
696663687590431Zinc-binding dehydrogenase
76666637Thiolase, N-terminal domain
282215202513123Beta-ketoacyl synthase, N-terminal domain
676537342Fe-2S iron-sulfur cluster binding domain
1113Papain family cysteine protease
1111116Enolase, C-terminal TIM barrel domain
1214Cytochrome C and Quinol oxidase polypeptide I
889810750Glutamine amidotransferase class-I
10101010101060TCP-1/cpn60 chaperonin family
11ATP synthase A chain
33333419Glutamine synthetase, catalytic domain
22222212Triosephosphate isomerase
191714182318109E1-E2 ATPase
118789952Core histone H2A/H2B/H3/H4
1113Copper binding proteins, plastocyanin/azurin family
67678842Alpha amylase, catalytic domain
11222210Phorbol esters/diacylglycerol binding domain (C1 domain)
877108646Bacterial transferase hexapeptide (six repeats)
33336321tRNA synthetases class I (I, L, M and V)
97789949Cyclin, N-terminal domain
292523284035180Carboxylesterase family
4444420DNA polymerase family B
44444424ATP synthase subunit C
875710542Peroxidase
771111222078Beta-lactamase
22333316C-5 cytosine-specific DNA methylase
282630262529164Calcineurin-like phosphoesterase
981111191472Cellulase (glycosyl hydrolase family 5)
77778743tRNA synthetases class II (D, K and N)
414238394042242Mitochondrial carrier protein
171517152520109Aminotransferase class I and II
889951049Phosphoribosyl transferase domain
13121212111171Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111116Phosphoglycerate kinase
22222212Ribosomal protein S4/S9 N-terminal domain
22222212Ribosomal protein S12/S23
1111116Bacterial regulatory helix-turn-helix proteins, AraC family
1111116Chaperonin 10 Kd subunit
12121411111373C2 domain
221920181019108PH domain
991111131063bZIP transcription factor
272623203731164Aldehyde dehydrogenase family
1921791982022653261,362Fungal Zn(2)-Cys(6) binuclear cluster domain
242621232527146Cytochrome b5-like Heme/Steroid binding domain
44446527Oxidoreductase molybdopterin binding domain
18181215131894Oxidoreductase NAD-binding domain
252725263029162SNF2 family N-terminal domain
22222212Ribosomal protein S7p/S5e
222226242425143Ubiquitin-conjugating enzyme
77679844Isocitrate/isopropylmalate dehydrogenase
22222212Ribosomal Proteins L2, RNA binding domain
1111116Hsp90 protein
22222212Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111116Dihydrofolate reductase
10111115112785Chitin recognition protein
13344419Cysteine-rich secretory protein family
1111116Ribosomal protein S3, C-terminal domain
46576533Cupin
22222212Annexin
11223211Eukaryotic-type carbonic anhydrase
11125Chalcone and stilbene synthases, N-terminal domain
433347242-oxoacid dehydrogenases acyltransferase (catalytic domain)
44358630Catalase
1111116Disintegrin
66UDP-glucoronosyl and UDP-glucosyl transferase
1011710111362Aminotransferase class-III
22222212Ribosomal protein S19
1111116DNA gyrase B
65656937Thiamine pyrophosphate enzyme, central domain
44446426Lyase
22222212Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1111217Sodium:neurotransmitter symporter family
1111116Adenylate and Guanylate cyclase catalytic domain
1111116ATP synthase delta (OSCP) subunit
1111127Orotidine 5'-phosphate decarboxylase / HUMPS family
1111116Indole-3-glycerol phosphate synthase
1111116Pyruvate kinase, barrel domain
11101010121063Kinesin motor domain
292935352831187DnaJ domain
14141414131483Proteasome subunit
7671010848Major intrinsic protein
1111116ATP synthase
33335623Glycosyl hydrolase family 1
11111163'5'-cyclic nucleotide phosphodiesterase
2111117Profilin
1111217Ribosomal protein L22p/L17e
22222212Ribosomal protein L14p/L23e
11111212101268Ubiquitin family
55555631Cofilin/tropomyosin-type actin-binding protein
2222321314-3-3 protein
66663532Alkaline phosphatase
889991053Zinc carboxypeptidase
252530293437180Aldo/keto reductase family
1514131961380Myb-like DNA-binding domain
44444525Forkhead domain
33234520Glycosyl hydrolases family 32 N-terminal domain
1111217Ribosomal protein L16p/L10e
33233317Ribosomal protein S14p/S29e
55555530FKBP-type peptidyl-prolyl cis-trans isomerase
1111116Glutathione peroxidase
112116
98697746Flavodoxin
11Protamine P1
1111116Calreticulin family
12111013161476Common central domain of tyrosinase
887710747Aminotransferase class-V
1111116Ribonucleotide reductase, small chain
393940404338239DEAD/DEAH box helicase
777476737574449Helicase conserved C-terminal domain
1111116EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22222212Ribosomal protein L23
1121117Pyridoxal-dependent decarboxylase, C-terminal sheet domain
22222212Ribosomal protein L5
66666636Pyridoxal-dependent decarboxylase conserved domain
33223215Citrate synthase, C-terminal domain
55555530GHMP kinases N terminal domain
77677842Biotin carboxylase, N-terminal domain
1111116Tryptophan synthase alpha chain
1410912141170Pyridoxal-phosphate dependent enzyme
11'Paired box' domain
16151514151489NUDIX domain
56647735pfkB family carbohydrate kinase
547711842Glycosyl hydrolases family 28
111159Luciferase-like monooxygenase
22222212Ribosomal protein L3
22222111Ribosomal protein L11, RNA binding domain
15131314151484Histidine phosphatase superfamily (branch 1)
1111116Thymidylate synthase
11Lipoxygenase
44444424ATP synthase alpha/beta chain, C terminal domain
55555530Calponin homology (CH) domain
76662532Glutamine amidotransferases class-II
32222213Ribosomal protein S15
1111116Thaumatin family
22222212Fructose-1-6-bisphosphatase, N-terminal domain
1111116Ribonucleotide reductase, all-alpha domain
32222213Ribosomal protein S2
22222212SRF-type transcription factor (DNA-binding and dimerisation domain)
76666839GATA zinc finger
394138442261245Amino acid permease
86558537Prolyl oligopeptidase family
33333318Ribosomal protein L30p/L7e
12121212131374Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
44447629Aconitase family (aconitate hydratase)
55545630Glycosyl hydrolase family 10
23443420Glycosyl hydrolases family 17
22222212Ribosomal protein S5, N-terminal domain
1111116Nucleoside diphosphate kinase
111216Tetraspanin family
1111217Ribosomal protein S10p/S20e
44447629Arrestin (or S-antigen), N-terminal domain
1111116Phosphoglucose isomerase
1111116Carbohydrate phosphorylase
1111116SecY translocase
1111116Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222212Ribosomal protein L6
88434330Polyprenyl synthetase
44545527Hexokinase
7487131049Dynamin family
1111116Transcription factor TFIID (or TATA-binding protein, TBP)
568710844Rieske [2Fe-2S] domain
11Phytochrome region
74112Proton-conducting membrane transporter
111089121464Biotin-requiring enzyme
1111116Phosphofructokinase
22222212Ribosomal protein S17
1111228Hydroxymethylglutaryl-coenzyme A reductase
33333318FGGY family of carbohydrate kinases, N-terminal domain
111115Sodium:dicarboxylate symporter family
12111211162385Enoyl-CoA hydratase/isomerase
22222212Ribosomal protein S9/S16
22222212Transcription factor TFIIB repeat
66787741Cytidine and deoxycytidylate deaminase zinc-binding region
1112218Molybdopterin oxidoreductase
55754531Chromo (CHRromatin Organisation MOdifier) domain
33333318Phosphatidylinositol-specific phospholipase C, Y domain
33434320Phosphatidylinositol-specific phospholipase C, X domain
9797111356D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
22222212Malic enzyme, N-terminal domain
222221116-phosphogluconate dehydrogenase, C-terminal domain
12118912860Multicopper oxidase
11111111111267WW domain
1111217Ribosomal RNA adenine dimethylase
22222212Yeast PIR protein repeat
127114102112121113689WD domain, G-beta repeat
45456630Heavy-metal-associated domain
43533321Adenylate kinase
22223213Phosphoglucomutase/phosphomannomutase, C-terminal domain
22222212Ribosomal protein S8
1122219Ribosomal protein S11
44445526LIM domain
1111228Matrixin
12222211Regulator of chromosome condensation (RCC1) repeat
22222212Ribosomal protein S13/S18
213NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
22222212chorismate binding enzyme
4444342360s Acidic ribosomal protein
45444425Prenyltransferase and squalene oxidase repeat
65654632Protein kinase C terminal domain
1111116Single-strand binding protein family
1111116S-adenosylmethionine synthetase, N-terminal domain
771087847Bromodomain
151514152023102Acyl-CoA dehydrogenase, C-terminal domain
14151516151590Ubiquitin carboxyl-terminal hydrolase
111115Ribosomal protein L36
32221212Ribonuclease T2 family
43333319HSF-type DNA-binding
22221211SRP54-type protein, GTPase domain
1111116Urease alpha-subunit, N-terminal domain
13118108959Serine carboxypeptidase
88888848Phosphatidylinositol 3- and 4-kinase
22224315Transketolase, thiamine diphosphate binding domain
55343626Glycosyl hydrolases family 11
55556531Inositol monophosphatase family
44444424Glutaredoxin
33432520Isocitrate lyase family
22222212Serine hydroxymethyltransferase
64445528Iron-containing alcohol dehydrogenase
22222212Ribosomal protein L10
33333419KOW motif
1111116Ribosomal protein L34
1113Negative factor, (F-Protein) or Nef
22223213RF-1 domain
33342520Sodium:solute symporter family
1111116Imidazoleglycerol-phosphate dehydratase
111115DNA polymerase family A
1111116IMP dehydrogenase / GMP reductase domain
1111116Glucose-6-phosphate dehydrogenase, NAD binding domain
87777743Protein phosphatase 2C
33333318Nucleotidyl transferase
22234417Carbonic anhydrase
1111217Phosphoribulokinase / Uridine kinase family
77867843Fatty acid desaturase
66666636MutS domain V
1111116Delta-aminolevulinic acid dehydratase
55445427Arginase family
76666637MCM P-loop domain
22224214Squalene/phytoene synthase
878119851FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
574142456166312AMP-binding enzyme
44444525G-protein alpha subunit
789128751HMG (high mobility group) box
1113NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
222020212225130His Kinase A (phospho-acceptor) domain
33332317Armadillo/beta-catenin-like repeat
312727261440165Tetratricopeptide repeat
22323214Ion transport protein
1111116DNA gyrase/topoisomerase IV, subunit A
119111191263BRCA1 C Terminus (BRCT) domain
67775638Glycosyl transferases group 1
56392328Glycosyl transferase family 2
33354220SAM domain (Sterile alpha motif)
1111116linker histone H1 and H5 family
211116Ribosomal protein L7/L12 C-terminal domain
55687738Pectate lyase
22114111ribonuclease
1111116Urease, gamma subunit
54444425CoA-ligase
292116183015129Phosphopantetheine attachment site
33333318Formyl transferase
999911855Metallopeptidase family M24
181614141375Leucine Rich Repeat
424246431362248alpha/beta hydrolase fold
33333318RNA polymerase Rpb2, domain 6
33334319PB1 domain
22222212Staphylococcal nuclease homologue
12121212121171Rab-GTPase-TBC domain
1111116Tudor domain
1111116WH1 domain
33447728Zinc finger, ZZ type
31333316HRDC domain
888971050CBS domain
22222212Ribosomal protein L13
22222212Ribosomal protein L4/L1 family
1111116Clp protease
43344321S1 RNA binding domain
1111116HIUase/Transthyretin family
65655633AhpC/TSA family
44544425tRNA synthetases class I (W and Y)
1112117UvrD/REP helicase N-terminal domain
444510431Rhodanese-like domain
22222212Universal stress protein family
454146393751259Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
1111116C-terminal regulatory domain of Threonine dehydratase
32222213AIR synthase related protein, N-terminal domain
99987951tRNA synthetase class II core domain (G, H, P, S and T)
22222212SpoU rRNA Methylase family
1113Phage integrase family
22222212Tetrapyrrole (Corrin/Porphyrin) Methylases
1111116Glycosyl transferase family, a/b domain
1211117PDZ domain
88768744Class II Aldolase and Adducin N-terminal domain
44444424Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
55555530Fes/CIP4, and EFC/F-BAR homology domain
65652529IQ calmodulin-binding motif
22222212Phosphoinositide 3-kinase family, accessory domain (PIK domain)
65552528Phospholipase D Active site motif
11115110Regulator of G protein signaling domain
33333318GTPase-activator protein for Ras-like GTPase
44444424RasGEF domain
44444424RasGEF N-terminal motif
98789849RhoGAP domain
66667637RhoGEF domain
22333417SPRY domain
33333318RNA polymerase Rpb1, domain 2
1111127Guanylate kinase
33434421Gelsolin repeat
88886947UBA/TS-N domain
171818181220103PHD-finger
1111116GGL domain
55555530HECT-domain (ubiquitin-transferase)
2111128Helix-hairpin-helix motif
1111116MSP (Major sperm protein) domain
1095103643Ribonuclease III domain
22225215Region in Clathrin and VPS
22222212RanBP1 domain
22221211PPIC-type PPIASE domain
111126Zn-finger in Ran binding protein and others
171721201117103Zinc finger C-x8-C-x5-C-x3-H type (and similar)
22333215Poly(ADP-ribose) polymerase catalytic domain
22221211Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
696484691776379F-box domain
1111116Elongation factor 1 gamma, conserved domain
33334319Calpain family cysteine protease
12222211Copper fist DNA binding domain
55555530CRAL/TRIO domain
191819202315114BTB/POZ domain
1231310Ricin-type beta-trefoil lectin domain
1111116Inhibitor of Apoptosis domain
33444422Voltage gated chloride channel
33243217Caspase domain
991514121372GDSL-like Lipase/Acylhydrolase
1121117Poly-adenylate binding protein, unique domain
111115POLO box duplicated region
11NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
201718172422118ABC transporter transmembrane region
98579846FAD binding domain
1166510644Condensation domain
1111116S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1111116HAMP domain
22222212ribosomal L5P family C-terminus
55565531Insulinase (Peptidase family M16)
33333722Dehydrogenase E1 component
1111116Lumazine binding domain
66666636Elongation factor G C-terminus
44456831HMGL-like
44444424DnaJ central domain
22433317Starch binding domain
32323215Ribosomal protein L1p/L10e family
109899954Cation transporting ATPase, C-terminus
1111101010961Cation transporter/ATPase, N-terminus
1122219dUTPase
44447629Aconitase C-terminal domain
23334419Amino acid kinase family
1111116N-(5'phosphoribosyl)anthranilate (PRA) isomerase
262215182310114Acyl transferase domain
1111116Urease beta subunit
767881046Dihydrodipicolinate synthetase family
383732341935195haloacid dehalogenase-like hydrolase
8678111252Glycosyl hydrolases family 2
16141219141489Glycosyl hydrolases family 18
1111116Proliferating cell nuclear antigen, N-terminal domain
11Translation initiation factor IF-3, C-terminal domain
1111116Acylphosphatase
1111116Adenylosuccinate synthetase
33332317Asparaginase, N-terminal
1111116Peptidase S24-like
1111127Inorganic pyrophosphatase
91051315860Glycosyl hydrolases family 16
22343317Glycosyl hydrolases family 15
55686939NADH:flavin oxidoreductase / NADH oxidase family
332233163-hydroxyacyl-CoA dehydrogenase, C-terminal domain
43333420Glycosyl hydrolase family 20, catalytic domain
44456528HhH-GPD superfamily base excision DNA repair protein
1111116AIR carboxylase
292523243736174GMC oxidoreductase
43434220Asparagine synthase
111189111565Fungal cellulose binding domain
66666636Septin
1111116EF-1 guanine nucleotide exchange domain
1111116Homoserine dehydrogenase
238316Flavin-binding monooxygenase-like
11LPXTG cell wall anchor motif
33333318tRNA synthetases class I (E and Q), catalytic domain
22222212tRNA synthetases class I (R)
44444424XPG N-terminal domain
13161017172598Metallo-beta-lactamase superfamily
1232311F5/8 type C domain
22323214Choline/Carnitine o-acyltransferase
1111217Putative esterase
1111116Ferrochelatase
22222212Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
2211118Arginosuccinate synthase
1111116Electron transfer flavoprotein FAD-binding domain
33333318RNB domain
7657121249Dioxygenase
33333318CNH domain
1111217Diacylglycerol kinase catalytic domain
889810952Dual specificity phosphatase, catalytic domain
33332317P21-Rho-binding domain
13131212141276PX domain
33332317Ras association (RalGDS/AF-6) domain
76666637UBX domain
44444424VHS domain
1111116Phosphoinositide 3-kinase C2
22222212DAHP synthetase I family
1312810111367Carbon-nitrogen hydrolase
11222210N-acetyltransferase
1111116Prephenate dehydratase
11PKD domain
54553527Syntaxin
55554529Pumilio-family RNA binding repeat
77777742Histone-like transcription factor (CBF/NF-Y) and archaeal histone
1111116Pterin binding enzyme
22222212ER lumen protein retaining receptor
22222212tRNA N6-adenosine threonylcarbamoyltransferase
211116Histidinol dehydrogenase
43444524impB/mucB/samB family
111115
1111116Ribosomal L15
1111318Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
1111116Ribosomal L28 family
1111116Ribosomal L29 protein
1111116Ribosomal L39 protein
2111117Ribosomal S17
2111117Ribulose-phosphate 3 epimerase family
1111116Translationally controlled tumour protein
66545531Glycosyl hydrolase family 7
55Ring hydroxylating alpha subunit (catalytic domain)
1111116RNA pseudouridylate synthase
44444424Histone deacetylase domain
88888949POT family
111115PWWP domain
171823222623129SET domain
1212119121369Isochorismatase family
55434526Permease family
1111116Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
55554630XPG I-region
1111116Acetokinase family
33334319DNA photolyase
11NlpC/P60 family
11417Nitroreductase family
11Zinc dependent phospholipase C
22455826Sulfatase
11111166,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
22222212Acyl CoA binding protein
45444425Cullin family
1312131771981FAD binding domain
12121117171483O-methyltransferase domain
64534527EamA-like transporter family
2222210
88887847ThiF family
1111116Ribosomal family S4e
556971648Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
11Hepatitis core antigen
55455529Ammonium Transporter Family
76666637Sulfate permease family
1111116MATH domain
22224315Dehydratase family
1121117Transaldolase/Fructose-6-phosphate aldolase
33232215Mechanosensitive ion channel
1111217GTP cyclohydrolase II
11111163,4-dihydroxy-2-butanone 4-phosphate synthase
44444424Adaptor complexes medium subunit family
8556630Exonuclease
22223213Dipeptidyl peptidase IV (DPP IV) N-terminal region
11119325NB-ARC domain
18151314172198Glycosyl hydrolase family 3 N terminal domain
1111116Ribosomal protein L44
11Sodium:sulfate symporter transmembrane region
1111116DNA-dependent RNA polymerase
22222212FAD binding domain in molybdopterin dehydrogenase
1111116Glycosyl transferase family 4
12122210HCO3- transporter family
22222212Nucleosome assembly protein (NAP)
44444525Synaptobrevin
1111116GMP synthase C terminal domain
1113Phage lysozyme
1318132LAGLIDADG endonuclease
54665733Adenosine/AMP deaminase
887761046Oxidoreductase FAD-binding domain
12215112Thioesterase domain
22222212Histidine biosynthesis protein
33343319Glycosyltransferase family 20
2214110UDP-glucose/GDP-mannose dehydrogenase family, central domain
22222212Carbamoyl-phosphate synthase small chain, CPSase domain
4624420PAS fold
22232213Probable molybdopterin binding domain
44444424Sec1 family