PFAM Domains • Yarrowia lipolytica YlCW001 v1.0
Annotations/GenomesYarli1YarliW29YarliW29_1YarliYB392YarliYB419YarliYB420YarliYB566YarliYB567YarliYlCW001Yarlip1TotalAnnotation Description
PFAMs
5,7376,9587,0306,9366,9256,9576,9566,9606,9556,77568,189
33313231313132323130314ATPase family associated with various cellular activities (AAA)
32323332323232323232321ABC transporter
444444444440ATP synthase alpha/beta family, nucleotide-binding domain
11EGF-like domain
14141414141414141414140Elongation factor Tu GTP binding domain
988888888780Helix-loop-helix DNA-binding domain
233333333228Hsp20/alpha crystallin family
1111131010131112123106Hsp70 protein
1177777777875KH domain
11SH2 domain
20141314141413131313141SH3 domain
10101010101010101010100Actin
2045444444457Ankyrin repeat
777777777669ADP-ribosylation factor family
37423941414141414240405Eukaryotic aspartyl protease
444444444440Cyclic nucleotide-binding domain
111111111110Cytochrome c
211111111111Double-stranded RNA binding motif
1744444444453EF hand
2134Fe-4S binding domain
211111111111Fibronectin type III domain
311111111112Globin
1088888888882Glutathione S-transferase, C-terminal domain
111111111110Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
555545445547Homeodomain
222222322221lactate/malate dehydrogenase, NAD binding domain
555555555550Myosin head (motor domain)
17171717171717171717170Cytochrome P450
83858585858585858586849Protein kinase domain
576777777767Pyridine nucleotide-disulphide oxidoreductase
24242524242424242424241Ras family
776777777769Response regulator receiver domain
12141413131312121313129RNase H
55525252525252525251522RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
11Retroviral aspartyl protease
202646Reverse transcriptase (RNA-dependent DNA polymerase)
222222222220Copper/zinc superoxide dismutase (SODC)
222222222220Iron/manganese superoxide dismutases, alpha-hairpin domain
16171717171717171717169Subtilase family
26373835363735353637352Sugar (and other) transporter
999999999990Thioredoxin
22Trypsin
444444444440Tubulin/FtsZ family, GTPase domain
3410101010101010109123Zinc finger, C2H2 type
3633333333363Zinc finger, C3HC4 type (RING finger)
624323332331Zinc knuckle
222222222220Protein-tyrosine phosphatase
29272727272727272726271short chain dehydrogenase
20161616161616161610158Zinc-binding dehydrogenase
344444444439Thiolase, N-terminal domain
222222222220Beta-ketoacyl synthase, N-terminal domain
3111111111122Fe-2S iron-sulfur cluster binding domain
111111111110Enolase, C-terminal TIM barrel domain
888888888779Glutamine amidotransferase class-I
10101010101010101010100TCP-1/cpn60 chaperonin family
222222222220Glutamine synthetase, catalytic domain
222222222220Triosephosphate isomerase
9141414141414141414135E1-E2 ATPase
10101110101011101010102Core histone H2A/H2B/H3/H4
111111111110Alpha amylase, catalytic domain
111111111110Phorbol esters/diacylglycerol binding domain (C1 domain)
634333333233Bacterial transferase hexapeptide (six repeats)
355555555447tRNA synthetases class I (I, L, M and V)
899999999989Cyclin, N-terminal domain
443444444439Carboxylesterase family
444444444440DNA polymerase family B
333333333330ATP synthase subunit C
333333333330Peroxidase
333333333330Beta-lactamase
32323132323232323230317Calcineurin-like phosphoesterase
333333333330Cellulase (glycosyl hydrolase family 5)
666666666660tRNA synthetases class II (D, K and N)
39403838383838383837382Mitochondrial carrier protein
14141414141414141414140Aminotransferase class I and II
844444444444Phosphoribosyl transferase domain
10111111111111111111109Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
111111111110Phosphoglycerate kinase
222222222220Ribosomal protein S4/S9 N-terminal domain
222222222220Ribosomal protein S12/S23
222222222220Bacterial regulatory helix-turn-helix proteins, AraC family
111111111110Chaperonin 10 Kd subunit
877777777670C2 domain
18111111111111111111117PH domain
788888888879bZIP transcription factor
13161616161616161615156Aldehyde dehydrogenase family
51525150515050515151508Fungal Zn(2)-Cys(6) binuclear cluster domain
15141214141414141414139Cytochrome b5-like Heme/Steroid binding domain
766666666661Oxidoreductase NAD-binding domain
19202020202020202020199SNF2 family N-terminal domain
222222222220Ribosomal protein S7p/S5e
16161616161616161616160Ubiquitin-conjugating enzyme
555555555550Isocitrate/isopropylmalate dehydrogenase
222222222220Ribosomal Proteins L2, RNA binding domain
111111111110Hsp90 protein
222222222220Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111111111110Dihydrofolate reductase
222222222220Cysteine-rich secretory protein family
111111111110Ribosomal protein S3, C-terminal domain
111111111110Annexin
3333333333302-oxoacid dehydrogenases acyltransferase (catalytic domain)
333333333330Catalase
111111111110Disintegrin
1111111119UDP-glucoronosyl and UDP-glucosyl transferase
666666666660Aminotransferase class-III
222222222220Ribosomal protein S19
111111111110DNA gyrase B
444444444440Thiamine pyrophosphate enzyme, central domain
333333333330Lyase
222222222220Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
111111111110Adenylate and Guanylate cyclase catalytic domain
111111111110ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
111111111110Indole-3-glycerol phosphate synthase
111111111110Pyruvate kinase, barrel domain
999999999990Kinesin motor domain
31262626262626262626265DnaJ domain
14141514141414141414141Proteasome subunit
333333333330Major intrinsic protein
111111111110ATP synthase
1111111111103'5'-cyclic nucleotide phosphodiesterase
111111111110Profilin
222222222220Ribosomal protein L22p/L17e
222222222220Ribosomal protein L14p/L23e
997999999988Ubiquitin family
344444444439Cofilin/tropomyosin-type actin-binding protein
22222222222014-3-3 protein
111111111110Alkaline phosphatase
111111111110Zinc carboxypeptidase
1717161717171717176158Aldo/keto reductase family
1455555555559Myb-like DNA-binding domain
333333333330Forkhead domain
11114Glycosyl hydrolases family 32 N-terminal domain
122222222219Ribosomal protein L16p/L10e
121222222218Ribosomal protein S14p/S29e
333323223327FKBP-type peptidyl-prolyl cis-trans isomerase
111111111110Glutathione peroxidase
11
10910999999891Flavodoxin
111111111110Calreticulin family
666666666660Aminotransferase class-V
111111111110Ribonucleotide reductase, small chain
34384139393939393838384DEAD/DEAH box helicase
62596159596060615959599Helicase conserved C-terminal domain
111111111110EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222222220Ribosomal protein L23
1211111210Pyridoxal-dependent decarboxylase, C-terminal sheet domain
111111111110Ribosomal protein L5
333333333330Pyridoxal-dependent decarboxylase conserved domain
233333333329Citrate synthase, C-terminal domain
555555555550GHMP kinases N terminal domain
777767777769Biotin carboxylase, N-terminal domain
111111111110Tryptophan synthase alpha chain
999999999990Pyridoxal-phosphate dependent enzyme
999999999990NUDIX domain
444444444440pfkB family carbohydrate kinase
66666666654Luciferase-like monooxygenase
222222222220Ribosomal protein L3
222222222220Ribosomal protein L11, RNA binding domain
10101010101010101010100Histidine phosphatase superfamily (branch 1)
1111111119Thymidylate synthase
444444444440ATP synthase alpha/beta chain, C terminal domain
555555555550Calponin homology (CH) domain
533333333332Glutamine amidotransferases class-II
222222222220Ribosomal protein S15
111111111110Fructose-1-6-bisphosphatase, N-terminal domain
222222222220Ribonucleotide reductase, all-alpha domain
222222222220Ribosomal protein S2
222222222220SRF-type transcription factor (DNA-binding and dimerisation domain)
777777777770GATA zinc finger
31171717171717171717184Amino acid permease
111111111110Prolyl oligopeptidase family
222222222220Ribosomal protein L30p/L7e
444444444440Histidine phosphatase superfamily (branch 2)
1111111119Respiratory-chain NADH dehydrogenase, 30 Kd subunit
444444444440Aconitase family (aconitate hydratase)
433333333331Glycosyl hydrolases family 17
222222222119Ribosomal protein S5, N-terminal domain
111111111110Nucleoside diphosphate kinase
122222222219Ribosomal protein S10p/S20e
455555555549Arrestin (or S-antigen), N-terminal domain
111111111110Phosphoglucose isomerase
111111111110Carbohydrate phosphorylase
222222222220SecY translocase
111111111110Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222222220Ribosomal protein L6
333333333330Polyprenyl synthetase
333333333330Hexokinase
455555555549Dynamin family
111111111110Transcription factor TFIID (or TATA-binding protein, TBP)
111111111110Rieske [2Fe-2S] domain
999989999888Biotin-requiring enzyme
111111111110Phosphofructokinase
222222222220Ribosomal protein S17
111111111110Hydroxymethylglutaryl-coenzyme A reductase
333333333330FGGY family of carbohydrate kinases, N-terminal domain
1099999999991Enoyl-CoA hydratase/isomerase
222122222219Ribosomal protein S9/S16
223222222221Transcription factor TFIIB repeat
666666666660Cytidine and deoxycytidylate deaminase zinc-binding region
111111111110Molybdopterin oxidoreductase
222222222220Chromo (CHRromatin Organisation MOdifier) domain
111111111110Phosphatidylinositol-specific phospholipase C, Y domain
122222222219Phosphatidylinositol-specific phospholipase C, X domain
1416151616161616163144D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
111111111110Malic enzyme, N-terminal domain
1111111111106-phosphogluconate dehydrogenase, C-terminal domain
333333333330Multicopper oxidase
655555555551WW domain
222222222220Ribosomal RNA adenine dimethylase
876777777770Yeast PIR protein repeat
94999999999999999999985WD domain, G-beta repeat
444444444440Heavy-metal-associated domain
333333333330Adenylate kinase
333333333330Phosphoglucomutase/phosphomannomutase, C-terminal domain
233333333329Ribosomal protein S8
111111111110Ribosomal protein S11
444444444440LIM domain
144444444437Regulator of chromosome condensation (RCC1) repeat
222222222220Ribosomal protein S13/S18
222222222220chorismate binding enzyme
44344444443960s Acidic ribosomal protein
433333333331Prenyltransferase and squalene oxidase repeat
744444444443Protein kinase C terminal domain
111111111110Single-strand binding protein family
111111111110S-adenosylmethionine synthetase, N-terminal domain
999999999990Bromodomain
111081010101010101099Acyl-CoA dehydrogenase, C-terminal domain
14131313131313131313131Ubiquitin carboxyl-terminal hydrolase
11Ribosomal protein L36
222222222220Ribonuclease T2 family
333333333330HSF-type DNA-binding
222222222220SRP54-type protein, GTPase domain
10101010101010101010100Serine carboxypeptidase
899999999989Phosphatidylinositol 3- and 4-kinase
122222222219Transketolase, thiamine diphosphate binding domain
222222222220Inositol monophosphatase family
444444444440Glutaredoxin
222222332222Isocitrate lyase family
222222222220Serine hydroxymethyltransferase
111111111110Iron-containing alcohol dehydrogenase
222222222220Ribosomal protein L10
322222222221KOW motif
111111111110Ribosomal protein L34
233333333329RF-1 domain
566666666659Sodium:solute symporter family
111111111110Imidazoleglycerol-phosphate dehydratase
111111111110DNA polymerase family A
111111111110IMP dehydrogenase / GMP reductase domain
111111111110Glucose-6-phosphate dehydrogenase, NAD binding domain
666666666660Protein phosphatase 2C
332333333329Nucleotidyl transferase
111111111110Carbonic anhydrase
155555555546Phosphoribulokinase / Uridine kinase family
444444444440Fatty acid desaturase
444444444440MutS domain V
111111111110Delta-aminolevulinic acid dehydratase
222222222220Arginase family
666666666660MCM P-loop domain
122222222219Squalene/phytoene synthase
788888888879FHA domain
18191919191919191918188AMP-binding enzyme
222222222220G-protein alpha subunit
888888888880HMG (high mobility group) box
444444444440His Kinase A (phospho-acceptor) domain
222222222220Armadillo/beta-catenin-like repeat
22111111111111111110120Tetratricopeptide repeat
111111111110Ion transport protein
111111111110DNA gyrase/topoisomerase IV, subunit A
1099999999991BRCA1 C Terminus (BRCT) domain
544444444441Glycosyl transferases group 1
222222222220Glycosyl transferase family 2
222222222220SAM domain (Sterile alpha motif)
111111111110linker histone H1 and H5 family
111111111110Ribosomal protein L7/L12 C-terminal domain
333333333330CoA-ligase
333333333330Phosphopantetheine attachment site
222222222220Formyl transferase
788888888879Metallopeptidase family M24
1011111111119Leucine Rich Repeat
1755555555562alpha/beta hydrolase fold
333333333330RNA polymerase Rpb2, domain 6
333333333229PB1 domain
222222222220Staphylococcal nuclease homologue
11111111111111111111110Rab-GTPase-TBC domain
111111111110Tudor domain
111111111110WH1 domain
333333333330Zinc finger, ZZ type
111111111110HRDC domain
988888888881CBS domain
222222222220Ribosomal protein L13
122222222219Ribosomal protein L4/L1 family
111111111110Clp protease
444444444339S1 RNA binding domain
111111111110HIUase/Transthyretin family
444444444440AhpC/TSA family
444444444440tRNA synthetases class I (W and Y)
211111111111UvrD/REP helicase N-terminal domain
610101010101010101096Rhodanese-like domain
233333333329Universal stress protein family
26212021212121212121214Acetyltransferase (GNAT) family
111111111110SecE/Sec61-gamma subunits of protein translocation complex
111111111110C-terminal regulatory domain of Threonine dehydratase
222222222220AIR synthase related protein, N-terminal domain
877777777771tRNA synthetase class II core domain (G, H, P, S and T)
222222222220SpoU rRNA Methylase family
222222222220Tetrapyrrole (Corrin/Porphyrin) Methylases
111111111110Glycosyl transferase family, a/b domain
222222222220Class II Aldolase and Adducin N-terminal domain
455555555549Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
566666666659Fes/CIP4, and EFC/F-BAR homology domain
422222222222IQ calmodulin-binding motif
222222222220Phosphoinositide 3-kinase family, accessory domain (PIK domain)
211111111111Phospholipase D Active site motif
44444444436Regulator of G protein signaling domain
444444444440GTPase-activator protein for Ras-like GTPase
444444444440RasGEF domain
444444444440RasGEF N-terminal motif
10101010101010101010100RhoGAP domain
566666666558RhoGEF domain
444444444440SPRY domain
333333333330RNA polymerase Rpb1, domain 2
111111111110Guanylate kinase
433333333331Gelsolin repeat
956555555555UBA/TS-N domain
14111111111111111111113PHD-finger
111111111110GGL domain
666666666660HECT-domain (ubiquitin-transferase)
1111111119Helix-hairpin-helix motif
222222222220MSP (Major sperm protein) domain
211111111111Ribonuclease III domain
255555555547Region in Clathrin and VPS
333333333330RanBP1 domain
111111111110PPIC-type PPIASE domain
111111111110Zn-finger in Ran binding protein and others
1077777777773Zinc finger C-x8-C-x5-C-x3-H type (and similar)
111111111110B-box zinc finger
111111111110Poly(ADP-ribose) polymerase catalytic domain
43202220202020202020225F-box domain
222222222220Elongation factor 1 gamma, conserved domain
111111111110Calpain family cysteine protease
222222222220Copper fist DNA binding domain
777777777770CRAL/TRIO domain
15212120202020212120199BTB/POZ domain
111111111110Inhibitor of Apoptosis domain
333333333330Voltage gated chloride channel
111111111110Caspase domain
222222222220GDSL-like Lipase/Acylhydrolase
222222222220Poly-adenylate binding protein, unique domain
111111111110POLO box duplicated region
16161616161617171616162ABC transporter transmembrane region
10111Integrase core domain
333333333330FAD binding domain
11Condensation domain
111111111110S-adenosyl-L-homocysteine hydrolase, NAD binding domain
111111111110HAMP domain
222222222220ribosomal L5P family C-terminus
777777777770Insulinase (Peptidase family M16)
333333333330Dehydrogenase E1 component
1111111