PFAM Domains • Cokeromyces recurvatus NRRL 2243 v1.0
Annotations/GenomesBacci1Blatri1Cokrec1Kircor1Mucci2Mycafr1Parpar1Rhich1Rhimi1_1Rhior3Thaele1Zyghet1TotalAnnotation Description
PFAMs
13,47810,52410,54815,7899,58410,06011,39115,2568,62612,21811,91312,692142,079
11137 transmembrane receptor (Secretin family)
521543353154417 transmembrane sweet-taste receptor of 3 GCPR
534042534437426538514350558ATPase family associated with various cellular activities (AAA)
674039655236466034444647576ABC transporter
12871596947111013111ATP synthase alpha/beta family, nucleotide-binding domain
13217EGF-like domain
252020231721193018242021258Elongation factor Tu GTP binding domain
753739763735447439524452604Helix-loop-helix DNA-binding domain
444473314734461Hsp20/alpha crystallin family
191418191114201810182717205Hsp70 protein
19911171410112213161114167KH domain
11Ribulose bisphosphate carboxylase large chain, catalytic domain
11114SH2 domain
893236584139359148553839601SH3 domain
161211141114141811151214162Actin
711481942149954565811401Ankyrin repeat
15891812910139111213139ADP-ribosylation factor family
351921372718213820352432327Eukaryotic aspartyl protease
778975612797892Cyclic nucleotide-binding domain
112Cytochrome b/b6/petB
21231213221222Cytochrome c
11111111112113Double-stranded RNA binding motif
54232432155334821246EF hand
11415124Fe-4S binding domain
21111118Fibronectin type III domain
41242215Globin
203791378191112710126Glutathione S-transferase, C-terminal domain
63353136344546Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
552121452722235129372327381Homeodomain
83495556345562lactate/malate dehydrogenase, NAD binding domain
22Lectin C-type domain
211515251714172816191616219Myosin head (motor domain)
853221604120346335484855542Cytochrome P450
3582212203452372132343862102962502533,223Protein kinase domain
231314251812172815211615217Pyridine nucleotide-disulphide oxidoreductase
825053846042608551657265769Ras family
301816291515182717211821245Response regulator receiver domain
11215RNase H
1378585125889191165961121041011,280RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
14950Retroviral aspartyl protease
114547011519Reverse transcriptase (RNA-dependent DNA polymerase)
553113336353252Copper/zinc superoxide dismutase (SODC)
11212112121217Iron/manganese superoxide dismutases, alpha-hairpin domain
312214241613162715241921242Subtilase family
663021564726344222463740467Sugar (and other) transporter
181614211514152416151415197Thioredoxin
11Thyroglobulin type-1 repeat
51224225342234Trypsin
1337587898118794Tubulin/FtsZ family, GTPase domain
11von Willebrand factor type A domain
11WAP-type (Whey Acidic Protein) 'four-disulfide core'
1742727561402929147871383844936Zinc finger, C2H2 type
961051164747760411113399Zinc finger, C3HC4 type (RING finger)
18278114591737231321310350Zinc knuckle
75476568587573Protein-tyrosine phosphatase
493524584528344927313040450short chain dehydrogenase
462518522921193923282337360Zinc-binding dehydrogenase
96711106811577895Thiolase, N-terminal domain
32343433232234Beta-ketoacyl synthase, N-terminal domain
51124184511332Fe-2S iron-sulfur cluster binding domain
32132124222529Enolase, C-terminal TIM barrel domain
22Cytochrome C and Quinol oxidase polypeptide I
112Cytochrome C oxidase subunit II, periplasmic domain
13109169891799119129Glutamine amidotransferase class-I
151212141112111611181315160TCP-1/cpn60 chaperonin family
954654510566570Glutamine synthetase, catalytic domain
21181112111121Triosephosphate isomerase
493335523034404826344339463E1-E2 ATPase
21141317141414131420148176Core histone H2A/H2B/H3/H4
2112111413118Alpha amylase, catalytic domain
1710101549112411131110145Phorbol esters/diacylglycerol binding domain (C1 domain)
86998771789811107Bacterial transferase hexapeptide (six repeats)
66674678476774tRNA synthetases class I (I, L, M and V)
181516291814193320171718234Cyclin, N-terminal domain
22223122132224Carboxylesterase family
55655558466666DNA polymerase family B
83345348453555ATP synthase subunit C
1111111111212Legume lectin domain
43354246333444Peroxidase
1124Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
1111111211112Beta-lactamase
12222212111118C-5 cytosine-specific DNA methylase
1113NADH dehydrogenase
493030493732365033373636455Calcineurin-like phosphoesterase
55463346445756Cellulase (glycosyl hydrolase family 5)
856766610676780tRNA synthetases class II (D, K and N)
805654846353619052636472792Mitochondrial carrier protein
11recA bacterial DNA recombination protein
271718312018203418222022267Aminotransferase class I and II
14458136716101576111Phosphoribosyl transferase domain
151413161514152716171515192Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11122112121217Phosphoglycerate kinase
33353332353339Ribosomal protein S4/S9 N-terminal domain
44474346464353Ribosomal protein S12/S23
12222121111218Chaperonin 10 Kd subunit
361717292321194120261820287C2 domain
8532285144273510253603530582PH domain
483134572827314926383639444bZIP transcription factor
201412221513152212151618194Aldehyde dehydrogenase family
924339894640577752304654665Fungal Zn(2)-Cys(6) binuclear cluster domain
603138544131346937413140507Cytochrome b5-like Heme/Steroid binding domain
2221212111116Oxidoreductase molybdopterin binding domain
191414211612142313141415189Oxidoreductase NAD-binding domain
262123262022243622262227295SNF2 family N-terminal domain
44464346354451Ribosomal protein S7p/S5e
261822262222224322262325297Ubiquitin-conjugating enzyme
117798671279910102Isocitrate/isopropylmalate dehydrogenase
64365444455555Ribosomal Proteins L2, RNA binding domain
54474348454557Hsp90 protein
42233224243233Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
22122224212123Dihydrofolate reductase
4424613422101153Cysteine-rich secretory protein family
54455453334550Ribosomal protein S3, C-terminal domain
655563564666632-oxoacid dehydrogenases acyltransferase (catalytic domain)
75484346345457Catalase
63353332233238Disintegrin
20105231059117121211135UDP-glucoronosyl and UDP-glucosyl transferase
86576569565674Aminotransferase class-III
75454344354452Ribosomal protein S19
11111112111113DNA gyrase B
7451065543510670Thiamine pyrophosphate enzyme, central domain
44444446344550Lyase
52453237333343Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
12232223232226Ferritin-like domain
42242224232231Adenylate and Guanylate cyclase catalytic domain
21121112121116ATP synthase delta (OSCP) subunit
11111111111112Orotidine 5'-phosphate decarboxylase / HUMPS family
21121111111215Indole-3-glycerol phosphate synthase
43363336354245Pyruvate kinase, barrel domain
362624302824294628332630360Kinesin motor domain
453236523933426737384038499DnaJ domain
171414241414142614261416207Proteasome subunit
12242221123628Major intrinsic protein
22222122122222ATP synthase
126815877968781013'5'-cyclic nucleotide phosphodiesterase
11111113221217Profilin
54474348454658Ribosomal protein L22p/L17e
43353334363242Ribosomal protein L14p/L23e
312020282217173521282135295Ubiquitin family
7771066712687689Cofilin/tropomyosin-type actin-binding protein
6336333847455514-3-3 protein
53474335344651Alkaline phosphatase
421519342612183418191527279Aldo/keto reductase family
391819322324196133332126348Myb-like DNA-binding domain
141082010910136121010132Forkhead domain
11Glycosyl hydrolases family 32 N-terminal domain
14421442124433Ribosomal protein L16p/L10e
53454432343444Ribosomal protein S14p/S29e
956765410566776FKBP-type peptidyl-prolyl cis-trans isomerase
22121223232224Glutathione peroxidase
5564424
11Dehydrin
21109161589201114912154Flavodoxin
11121112121115Calreticulin family
966876895571187Aminotransferase class-V
31353232122330Ribonucleotide reductase, small chain
525254634858528547575560683DEAD/DEAH box helicase
99777996818084128778482861,053Helicase conserved C-terminal domain
21111112111114EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
53454444354449Ribosomal protein L23
3111111121316Pyridoxal-dependent decarboxylase, C-terminal sheet domain
54373335474553Ribosomal protein L5
64474345344452Pyridoxal-dependent decarboxylase conserved domain
22351222113327Citrate synthase, C-terminal domain
766666612666679GHMP kinases N terminal domain
127111411991689109125Biotin carboxylase, N-terminal domain
11111112121114Tryptophan synthase alpha chain
129910109915910913124Pyridoxal-phosphate dependent enzyme
156'Paired box' domain
261721252320203920232223279NUDIX domain
1064776610666781pfkB family carbohydrate kinase
56277185656Glycosyl hydrolases family 28
54464345354552Ribosomal protein L3
63474447474559Ribosomal protein L11, RNA binding domain
138101511101116107910130Histidine phosphatase superfamily (branch 1)
11111112111113Thymidylate synthase
11871596937111012108ATP synthase alpha/beta chain, C terminal domain
137121912710211291318153Calponin homology (CH) domain
213Bacterial dnaA protein
1034612459685779Glutamine amidotransferases class-II
33343226353239Ribosomal protein S15
2111212212116'Cold-shock' DNA-binding domain
73374358465560Thaumatin family
1111112121113Fructose-1-6-bisphosphatase, N-terminal domain
52474446334450Ribonucleotide reductase, all-alpha domain
75464344365556Ribosomal protein S2
14881410109149999123SRF-type transcription factor (DNA-binding and dimerisation domain)
653633733632386839394344546GATA zinc finger
3578152181034182498197Amino acid permease
97710667126761093Prolyl oligopeptidase family
64565558476465Ribosomal protein L30p/L7e
64465437453455Histidine phosphatase superfamily (branch 2)
21111112111114Respiratory-chain NADH dehydrogenase, 30 Kd subunit
64466469565869Aconitase family (aconitate hydratase)
422332323226Glycosyl hydrolases family 17
54454433363448Ribosomal protein S5, N-terminal domain
65786669556675Nucleoside diphosphate kinase
74396562314656Tetraspanin family
33443336363344Ribosomal protein S10p/S20e
462927572225333220173240380Arrestin (or S-antigen), N-terminal domain
11111112111113Phosphoglucose isomerase
32232123222226Carbohydrate phosphorylase
42242224232231SecY translocase
11121112121115Respiratory-chain NADH dehydrogenase, 49 Kd subunit
43343336343443Ribosomal protein L6
65565559555768Polyprenyl synthetase
171081811910168111112141Hexokinase
9910117710137898108Dynamin family
11111112121114Biopterin-dependent aromatic amino acid hydroxylase
31132221122121Transcription factor TFIID (or TATA-binding protein, TBP)
54365345444451Rieske [2Fe-2S] domain
213Proton-conducting membrane transporter
15913141211131910121414156Biotin-requiring enzyme
42242224222129Phosphofructokinase
32232221232327Ribosomal protein S17
22243233223432Hydroxymethylglutaryl-coenzyme A reductase
965765612675680FGGY family of carbohydrate kinases, N-terminal domain
31332122112324Sodium:dicarboxylate symporter family
1787141410112312131513157Enoyl-CoA hydratase/isomerase
53444348464453Ribosomal protein S9/S16
11114PTS HPr component phosphorylation site
33333234233436Transcription factor TFIIB repeat
10457948106510987Cytidine and deoxycytidylate deaminase zinc-binding region
211211112113Molybdopterin oxidoreductase
23121120991837182391913428Chromo (CHRromatin Organisation MOdifier) domain
112Phosphatidylinositol-specific phospholipase C, X domain
63475458565563D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
735105358555566Malic enzyme, N-terminal domain
312431242322296-phosphogluconate dehydrogenase, C-terminal domain
76695557357873Multicopper oxidase
26131120811122513171914189WW domain
33233436333238Ribosomal RNA adenine dimethylase
2041551661921581551642881571731711802,163WD domain, G-beta repeat
11Calponin family repeat
55555445336555Heavy-metal-associated domain
845866610555674Adenylate kinase
23342324233334Phosphoglucomutase/phosphomannomutase, C-terminal domain
52363336353345Ribosomal protein S8
43454426333344Ribosomal protein S11
191617241315162415111615201LIM domain
35781658467666Regulator of chromosome condensation (RCC1) repeat
43374344454449Ribosomal protein S13/S18
21111112111114Tau and MAP protein, tubulin-binding repeat
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
42222223222227chorismate binding enzyme
15889868137118710860s Acidic ribosomal protein
43454348443450Prenyltransferase and squalene oxidase repeat
17910129810171014109135Protein kinase C terminal domain
11Spectrin repeat
11121112121115Single-strand binding protein family
11Type II/IV secretion system protein
2112111212115S-adenosylmethionine synthetase, N-terminal domain
231715252016182718181917233Bromodomain
211516261516162517201622225Acyl-CoA dehydrogenase, C-terminal domain
271920232619204322252821293Ubiquitin carboxyl-terminal hydrolase
111111118Ribosomal protein L36
22131114321425Ribonuclease T2 family
291817312019192514181919248HSF-type DNA-binding
22122234223227SRP54-type protein, GTPase domain
31122122112220Urease alpha-subunit, N-terminal domain
74475467476667Serine carboxypeptidase
151312131312122112121311159Phosphatidylinositol 3- and 4-kinase
62232123223230Transketolase, thiamine diphosphate binding domain
1111112111112WHEP-TRS domain
22232224222227Inositol monophosphatase family
86101110681366610100Glutaredoxin
42242224222331Isocitrate lyase family
22232224222227Serine hydroxymethyltransferase
21111112121115Iron-containing alcohol dehydrogenase
34464345354348Ribosomal protein L10
148111710119762389133KOW motif
11111112111113Ribosomal protein L34
11111112111113Ribosomal protein L33
33333335333338RF-1 domain
1212111110Sodium:solute symporter family
21111112111114Imidazoleglycerol-phosphate dehydratase
11111111111112DNA polymerase family A
31222122122222IMP dehydrogenase / GMP reductase domain
52443334242339Glucose-6-phosphate dehydrogenase, NAD binding domain
1791017109101811171010148Protein phosphatase 2C
7689676116671089Nucleotidyl transferase
31132211112220Carbonic anhydrase
33532424232235Phosphoribulokinase / Uridine kinase family
13781287614710119112Fatty acid desaturase
666676610656676MutS domain V
11112112111114Delta-aminolevulinic acid dehydratase
33132224232633Arginase family
66666669676676MCM P-loop domain
35473446345654Squalene/phytoene synthase
291616341715203215201719250FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
572730503727345730393936463AMP-binding enzyme
17981412712148111112135G-protein alpha subunit
312123342126233719292223309HMG (high mobility group) box
11Cytochrome c oxidase subunit III
1579167891381289121His Kinase A (phospho-acceptor) domain
199914108918891011134Armadillo/beta-catenin-like repeat
572024253617247037432521399Tetratricopeptide repeat
1855138669449592Ion transport protein
11111112111113DNA gyrase/topoisomerase IV, subunit A
136531066151285392BRCA1 C Terminus (BRCT) domain
9688977127971099Glycosyl transferases group 1
82224227352241Glycosyl transferase family 2
9658244107124576SAM domain (Sterile alpha motif)
22111221131118linker histone H1 and H5 family
1112112121114Ribosomal protein L7/L12 C-terminal domain
31122122112220Urease, gamma subunit
73374345353350CoA-ligase
9451184684107884Phosphopantetheine attachment site
22332224222228Formyl transferase
161313151513152615171515188Metallopeptidase family M24
451012163316134727341211276Leucine Rich Repeat
33588258828161676168alpha/beta hydrolase fold
43353335353343RNA polymerase Rpb2, domain 6
179916889178989127PB1 domain
22222224222226Staphylococcal nuclease homologue
452627402726314122262935375Rab-GTPase-TBC domain
11111112111113Tudor domain
32212133112223WH1 domain
96665667566674Zinc finger, ZZ type
22222112112220HRDC domain
241615241814173115221716229CBS domain
643