PFAM Domains • Monascus ruber NRRL 1597 v1.0
Annotations/GenomesAspac1Aspbr1Aspca3Aspfo1Aspgl1Aspnid1Aspsy1Asptu1Aspve1Aspwe1Aspzo1Eurhe1Monru1Pench1Theau1TotalAnnotation Description
PFAMs
9,47810,4079,73210,1598,5649,07411,14310,01711,37010,0498,1618,2127,5469,1407,079140,131
117 transmembrane receptor (rhodopsin family)
445243504142414941504540474043668ATPase family associated with various cellular activities (AAA)
716872655249526165625348495434855ABC transporter
44454546444444464ATP synthase alpha/beta family, nucleotide-binding domain
11114EGF-like domain
141413141613141414141414141414210Elongation factor Tu GTP binding domain
99999131491510109101010155Helix-loop-helix DNA-binding domain
44442534453235456Hsp20/alpha crystallin family
778878777777777108Hsp70 protein
878878887788788115KH domain
11Ribulose bisphosphate carboxylase large chain, catalytic domain
1111111111111114SH2 domain
242320232123242324222322232323341SH3 domain
101011101110101010151010101010157Actin
8278447211259115738211145513959341,056Ankyrin repeat
31312421118PAN domain
777777778777787107ADP-ribosylation factor family
141315116101211121196888154Eukaryotic aspartyl protease
45544444444444462Cyclic nucleotide-binding domain
1113Cytochrome b(C-terminal)/b6/petD
112Cytochrome b/b6/petB
1111111111111114Cytochrome c
1222121211222122Double-stranded RNA binding motif
162017191718221922202117171618279EF hand
111111111112111164Fe-4S binding domain
32232323222232134Fibronectin type III domain
22121222212113125Globin
1721172012121922171813138147230Glutathione S-transferase, C-terminal domain
22221222212111225Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
1113Hemopexin
99976710810967775116Homeodomain
35334434352344252lactate/malate dehydrogenase, NAD binding domain
1111116Low-density lipoprotein receptor repeat class B
54344544445554464Myosin head (motor domain)
11914613114983114148159168132647742104501,686Cytochrome P450
100144145144110104114141112144131951201451021,851Protein kinase domain
192018171719221622201316141514262Pyridine nucleotide-disulphide oxidoreductase
222324232223232323232323242323345Ras family
181414141819231417171517101710237Response regulator receiver domain
2347310141312546RNase H
636255656365686466666364606564953RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
11201124Reverse transcriptase (RNA-dependent DNA polymerase)
112Serpin (serine protease inhibitor)
35232223212213134Copper/zinc superoxide dismutase (SODC)
22222222222222230Iron/manganese superoxide dismutases, alpha-hairpin domain
75864346682555478Subtilase family
871019210068106171961641101006146112561,470Sugar (and other) transporter
910912991111101591091111155Thioredoxin
31133242442111133Trypsin
54445754454444467Tubulin/FtsZ family, GTPase domain
21312221231214229von Willebrand factor type A domain
687974776862102701077656655275571,088Zinc finger, C2H2 type
444143454039504246444342423938638Zinc finger, C3HC4 type (RING finger)
75889722441228482Zinc knuckle
22222223222222231Protein-tyrosine phosphatase
1381711641441301411901432341469011484117772,083short chain dehydrogenase
95125108119947311211912511456784479461,387Zinc-binding dehydrogenase
669677869757667102Thiolase, N-terminal domain
33503149193723563429181418257443Beta-ketoacyl synthase, N-terminal domain
555655768445655812Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
11112111112221220Enolase, C-terminal TIM barrel domain
111227Cytochrome C and Quinol oxidase polypeptide I
1113Cytochrome C oxidase subunit II, periplasmic domain
10991098910910988119138Glutamine amidotransferase class-I
101010101010101010101010101010150TCP-1/cpn60 chaperonin family
1113ATP synthase A chain
55547354554533366Glutamine synthetase, catalytic domain
22222222222222230Triosephosphate isomerase
141718201418301923191513162018274E1-E2 ATPase
779777777877777108Core histone H2A/H2B/H3/H4
1715171661220151711115131612203Alpha amylase, catalytic domain
22222222222232231Phorbol esters/diacylglycerol binding domain (C1 domain)
1210911111010111099108117148Bacterial transferase hexapeptide (six repeats)
33334333433333347tRNA synthetases class I (I, L, M and V)
776777676877877104Cyclin, N-terminal domain
414141462024344945334817142111485Carboxylesterase family
4444444444444456DNA polymerase family B
56664645444545472ATP synthase subunit C
33432333343223243Peroxidase
912964813917137110124134Beta-lactamase
22222222232322333C-5 cytosine-specific DNA methylase
112NADH dehydrogenase
272830302828302929302727273125426Calcineurin-like phosphoesterase
11107941211101311845116132Cellulase (glycosyl hydrolase family 5)
777877787778777108tRNA synthetases class II (D, K and N)
393943413938433946443639364236600Mitochondrial carrier protein
1111116recA bacterial DNA recombination protein
272826332222333034292223222515391Aminotransferase class I and II
108910108128111288999141Phosphoribosyl transferase domain
101011101011111011111010101110156Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111111111111115Phosphoglycerate kinase
22121222121111122Ribosomal protein S4/S9 N-terminal domain
22222222222222230Ribosomal protein S12/S23
221121122115Bacterial regulatory helix-turn-helix proteins, AraC family
11111111111111115Chaperonin 10 Kd subunit
121011101011111011111010101112160C2 domain
171618171720201718161817191519264PH domain
10129129101491391011798152bZIP transcription factor
253433313328543158342528273718496Aldehyde dehydrogenase family
3024103453392683055243285683512752592023091364,921Fungal Zn(2)-Cys(6) binuclear cluster domain
282927292928322930332426222722415Cytochrome b5-like Heme/Steroid binding domain
22334353463422349Oxidoreductase molybdopterin binding domain
171919191517202023181316131912260Oxidoreductase NAD-binding domain
272726272324262827262622232525382SNF2 family N-terminal domain
22222222222222230Ribosomal protein S7p/S5e
232222222021212221202020212021316Ubiquitin-conjugating enzyme
8888881089888688121Isocitrate/isopropylmalate dehydrogenase
22222222222222230Ribosomal Proteins L2, RNA binding domain
11111111111111115Hsp90 protein
22222222222222230Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111111111111115Dihydrofolate reductase
54444755543341361Chitin recognition protein
2222222222222228Cysteine-rich secretory protein family
11111111111111115Ribosomal protein S3, C-terminal domain
5444432444112446Cupin
23231343422122135Annexin
3111111110Eukaryotic-type carbonic anhydrase
1111116Chalcone and stilbene synthases, N-terminal domain
66Bacterial regulatory proteins, luxR family
345343344434333532-oxoacid dehydrogenases acyltransferase (catalytic domain)
71013101247968411583117Catalase
21222222211211124Disintegrin
223141222214127UDP-glucoronosyl and UDP-glucosyl transferase
678988118171167796128Aminotransferase class-III
22222122222222229Ribosomal protein S19
11111111111111115DNA gyrase B
12813912611101012781096143Thiamine pyrophosphate enzyme, central domain
45444474553433463Lyase
22222222222222230Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11114Sodium:neurotransmitter symporter family
11111117Ferritin-like domain
1111111111111114Adenylate and Guanylate cyclase catalytic domain
11111111111111115ATP synthase delta (OSCP) subunit
22222122221221227Orotidine 5'-phosphate decarboxylase / HUMPS family
11211111111111116Indole-3-glycerol phosphate synthase
4453222322211134Aromatic amino acid lyase
11111111111111115Pyruvate kinase, barrel domain
111011111011111111111010101110159Kinesin motor domain
272928282527272828272826272727409DnaJ domain
141417141415151415141414141414216Proteasome subunit
87774567775546287Major intrinsic protein
11111111111111115ATP synthase
3332133353213237Glycosyl hydrolase family 1
111111111111111153'5'-cyclic nucleotide phosphodiesterase
11211111121112118Profilin
11111111111111115Ribosomal protein L22p/L17e
22222222222222230Ribosomal protein L14p/L23e
1198911119981110912910146Ubiquitin family
64554453654547370Cofilin/tropomyosin-type actin-binding protein
2222222222222223014-3-3 protein
22224452532434347Alkaline phosphatase
11111221211112119Zinc carboxypeptidase
354043392840484057393231243425555Aldo/keto reductase family
151513141617171215151715141614225Myb-like DNA-binding domain
34354444444444459Forkhead domain
273343336546150Glycosyl hydrolases family 32 N-terminal domain
11111111111111115Ribosomal protein L16p/L10e
22222222222222230Ribosomal protein S14p/S29e
44343554554334359FKBP-type peptidyl-prolyl cis-trans isomerase
21111121111111117Glutathione peroxidase
11112111122222222
988867789877667111Flavodoxin
112Protamine P1
11211111111111116Calreticulin family
6612629861095315391Common central domain of tyrosinase
1088976999755588113Aminotransferase class-V
11111111111111115Ribonucleotide reductase, small chain
414236454039414239403841383937598DEAD/DEAH box helicase
7773687771707574757872717070691,090Helicase conserved C-terminal domain
11111111111111115EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22222222222222230Ribosomal protein L23
21112111111222120Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11111111111111115Ribosomal protein L5
61079666981186676111Pyridoxal-dependent decarboxylase conserved domain
35655335354433360Citrate synthase, C-terminal domain
55556555565555577GHMP kinases N terminal domain
877778978968887114Biotin carboxylase, N-terminal domain
24532112232222134Tryptophan synthase alpha chain
141715141614161318151214131711219Pyridoxal-phosphate dependent enzyme
181714161614151617171517122015239NUDIX domain
55955675695558590pfkB family carbohydrate kinase
191919192111019111272255162Glycosyl hydrolases family 28
11112212112116Luciferase-like monooxygenase
22322222222222231Ribosomal protein L3
22222222222222230Ribosomal protein L11, RNA binding domain
13131410149111013201211111313187Histidine phosphatase superfamily (branch 1)
11111111111111115Thymidylate synthase
112Lipoxygenase
44454545444444463ATP synthase alpha/beta chain, C terminal domain
65555554554545573Calponin homology (CH) domain
56855565764545581Glutamine amidotransferases class-II
22222222222222230Ribosomal protein S15
1113'Cold-shock' DNA-binding domain
11Thaumatin family
11111111111111115Fructose-1-6-bisphosphatase, N-terminal domain
11111111111111115Ribonucleotide reductase, all-alpha domain
22222222222222230Ribosomal protein S2
23162234222254242SRF-type transcription factor (DNA-binding and dimerisation domain)
77810678781076576109GATA zinc finger
616971653452866787575636386433876Amino acid permease
65654656534433368Prolyl oligopeptidase family
22222222222222230Ribosomal protein L30p/L7e
1314151489111411121579119172Histidine phosphatase superfamily (branch 2)
11111111111111115Respiratory-chain NADH dehydrogenase, 30 Kd subunit
67776677776756596Aconitase family (aconitate hydratase)
232232244123131Glycosyl hydrolase family 10
45452425234335354Glycosyl hydrolases family 17
22222222222221128Ribosomal protein S5, N-terminal domain
11111111111111115Nucleoside diphosphate kinase
112127Galactoside-binding lectin
22222222221222229Ribosomal protein S10p/S20e
710710668107847555105Arrestin (or S-antigen), N-terminal domain
11111111111111115Phosphoglucose isomerase
112111111111114Carbohydrate phosphorylase
11111111111111115SecY translocase
11111111111111115Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222221222222229Ribosomal protein L6
988988596846373101Polyprenyl synthetase
56867596466766592Hexokinase
8107767777977786110Dynamin family
11111111112111116Transcription factor TFIID (or TATA-binding protein, TBP)
10999991391310597104135Rieske [2Fe-2S] domain
11Bacterial regulatory proteins, lacI family
11111111111112Phytochrome region
33118Proton-conducting membrane transporter
9910899109101171010108139Biotin-requiring enzyme
11111111112111116Phosphofructokinase
11111111111111115Ribosomal protein S17
34542224241123140Hydroxymethylglutaryl-coenzyme A reductase
43534453644455463FGGY family of carbohydrate kinases, N-terminal domain
11Hemocyanin, copper containing domain
112Sodium:dicarboxylate symporter family
11MerR family regulatory protein
111181011152311241081191410186Enoyl-CoA hydratase/isomerase
22222222222222230Ribosomal protein S9/S16
22222222222222230Transcription factor TFIIB repeat
7777678786668107107Cytidine and deoxycytidylate deaminase zinc-binding region
11212221211222123Molybdopterin oxidoreductase
564451954544545382Chromo (CHRromatin Organisation MOdifier) domain
22222222222212229Phosphatidylinositol-specific phospholipase C, Y domain
33232233332212236Phosphatidylinositol-specific phospholipase C, X domain
9121111611161115161289108165D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
22222222222232231Malic enzyme, N-terminal domain
11111117PEP-utilising enzyme, mobile domain
222222322222222316-phosphogluconate dehydrogenase, C-terminal domain
111811135814121011137797156Multicopper oxidase
8105991011109911910911140WW domain
11111111111112116Ribosomal RNA adenine dimethylase
1151161081181151121091181121171111081091141091,691WD domain, G-beta repeat
445444104754465575Heavy-metal-associated domain
43533333333333449Adenylate kinase
23232223232222234Phosphoglucomutase/phosphomannomutase, C-terminal domain
21221111122121222Ribosomal protein S8
11111111111111115Ribosomal protein S11
44444444444443459LIM domain
1121218Matrixin
22231332321122130Regulator of chromosome condensation (RCC1) repeat
22122222222222229Ribosomal protein S13/S18
11Fimbrial protein
1113NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
33343224233222240chorismate binding enzyme
3333334343333334760s Acidic ribosomal protein
65765677575645485Prenyltransferase and squalene oxidase repeat
66667666666776693Protein kinase C terminal domain
11111111111111115Single-strand binding protein family
11111111111211116S-adenosylmethionine synthetase, N-terminal domain
66475677755578792Bromodomain
11Bacterial regulatory proteins, tetR family
91010912151991815612131410181Acyl-CoA dehydrogenase, C-terminal domain
151517151514141514151615141516225Ubiquitin carboxyl-terminal hydrolase
11111111111111115Ribosomal protein L36
22222222232222231Ribonuclease T2 family
33333343333333346HSF-type DNA-binding
22222222222222230SRP54-type protein, GTPase domain
11112131211212121Urease alpha-subunit, N-terminal domain
101215128561389876