PFAM Domains • Trichoderma harzianum CBS 226.95 v1.0
Annotations/GenomesTrias1Triat2Triha1Trire2TrireRUTC30_1TriviGv29_8_2TotalAnnotation Description
PFAMs
9,1179,14010,1856,5077,8429,84452,635
117 transmembrane receptor (rhodopsin family)
117 transmembrane receptor (Secretin family)
465152444649288ATPase family associated with various cellular activities (AAA)
564761464762319ABC transporter
44444424ATP synthase alpha/beta family, nucleotide-binding domain
14131514141484Elongation factor Tu GTP binding domain
121011991061Helix-loop-helix DNA-binding domain
55433525Hsp20/alpha crystallin family
88978848Hsp70 protein
99888951KH domain
1111116SH2 domain
222122242222133SH3 domain
101010710956Actin
1171351546382171722Ankyrin repeat
42422418PAN domain
77777742ADP-ribosylation factor family
202022161721116Eukaryotic aspartyl protease
44444424Cyclic nucleotide-binding domain
11Cytochrome b(C-terminal)/b6/petD
1111116Cytochrome c
1112117Double-stranded RNA binding motif
181817201618107EF hand
11111164Fe-4S binding domain
43212214Fibronectin type III domain
22222212Globin
182331101427123Glutathione S-transferase, C-terminal domain
1121128Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
131010581157Homeodomain
33322316lactate/malate dehydrogenase, NAD binding domain
11Lipocalin / cytosolic fatty-acid binding protein family
45444526Myosin head (motor domain)
72661166968118509Cytochrome P450
105112111106108126668Protein kinase domain
222225141525123Pyridine nucleotide-disulphide oxidoreductase
242424232425144Ras family
15151413131484Response regulator receiver domain
23323518RNase H
596058595857351RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
112Reverse transcriptase (RNA-dependent DNA polymerase)
22222212Copper/zinc superoxide dismutase (SODC)
22323315Iron/manganese superoxide dismutases, alpha-hairpin domain
273634151529156Subtilase family
787490765986463Sugar (and other) transporter
12121311101472Thioredoxin
22312212Trypsin
55566532Tubulin/FtsZ family, GTPase domain
45424423von Willebrand factor type A domain
646273674863377Zinc finger, C2H2 type
393839323738223Zinc finger, C3HC4 type (RING finger)
591052940Zinc knuckle
33322215Protein-tyrosine phosphatase
160170199118120181948short chain dehydrogenase
7988106535192469Zinc-binding dehydrogenase
65565532Thiolase, N-terminal domain
202232171626133Beta-ketoacyl synthase, N-terminal domain
554555292Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
2211129Enolase, C-terminal TIM barrel domain
123Cytochrome C and Quinol oxidase polypeptide I
8811791053Glutamine amidotransferase class-I
10101010101060TCP-1/cpn60 chaperonin family
22622418Glutamine synthetase, catalytic domain
22222212Triosephosphate isomerase
171618161719103E1-E2 ATPase
87978948Core histone H2A/H2B/H3/H4
11Copper binding proteins, plastocyanin/azurin family
54644528Alpha amylase, catalytic domain
1212129Phorbol esters/diacylglycerol binding domain (C1 domain)
101210881260Bacterial transferase hexapeptide (six repeats)
44463425tRNA synthetases class I (I, L, M and V)
88877947Cyclin, N-terminal domain
201933121328125Carboxylesterase family
44444424DNA polymerase family B
46444426ATP synthase subunit C
66866739Peroxidase
161919891889Beta-lactamase
22212211C-5 cytosine-specific DNA methylase
293027272632171Calcineurin-like phosphoesterase
11109451049Cellulase (glycosyl hydrolase family 5)
87987847tRNA synthetases class II (D, K and N)
383840353638225Mitochondrial carrier protein
212028161829132Aminotransferase class I and II
810888850Phosphoribosyl transferase domain
10101010101060Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111116Phosphoglycerate kinase
22222212Ribosomal protein S4/S9 N-terminal domain
22222313Ribosomal protein S12/S23
44311215Bacterial regulatory helix-turn-helix proteins, AraC family
1111116Chaperonin 10 Kd subunit
14121414131380C2 domain
191719191917110PH domain
12121311141476bZIP transcription factor
262539202031161Aldehyde dehydrogenase family
3252764051922113101,719Fungal Zn(2)-Cys(6) binuclear cluster domain
242427212125142Cytochrome b5-like Heme/Steroid binding domain
43444423Oxidoreductase molybdopterin binding domain
201821141823114Oxidoreductase NAD-binding domain
262728252427157SNF2 family N-terminal domain
22222212Ribosomal protein S7p/S5e
192020202020119Ubiquitin-conjugating enzyme
77977845Isocitrate/isopropylmalate dehydrogenase
22222212Ribosomal Proteins L2, RNA binding domain
1111116Hsp90 protein
22222212Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111116Dihydrofolate reductase
65522525Chitin recognition protein
33333318Cysteine-rich secretory protein family
1111116Ribosomal protein S3, C-terminal domain
45433423Cupin
33323216Annexin
1111116Eukaryotic-type carbonic anhydrase
343334202-oxoacid dehydrogenases acyltransferase (catalytic domain)
77777742Catalase
1111116Disintegrin
12227UDP-glucoronosyl and UDP-glucosyl transferase
10811881055Aminotransferase class-III
22222212Ribosomal protein S19
1111116DNA gyrase B
98845943Thiamine pyrophosphate enzyme, central domain
43533321Lyase
22222212Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1111116Adenylate and Guanylate cyclase catalytic domain
1111116ATP synthase delta (OSCP) subunit
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
1111116Indole-3-glycerol phosphate synthase
1113Aromatic amino acid lyase
1111116Pyruvate kinase, barrel domain
9101011111061Kinesin motor domain
252626262625154DnaJ domain
14141414141484Proteasome subunit
67877843Major intrinsic protein
1111116ATP synthase
24422216Glycosyl hydrolase family 1
11111163'5'-cyclic nucleotide phosphodiesterase
1111116Profilin
1111116Ribosomal protein L22p/L17e
22222212Ribosomal protein L14p/L23e
1112128111266Ubiquitin family
55535528Cofilin/tropomyosin-type actin-binding protein
2222231314-3-3 protein
22333316Alkaline phosphatase
44444424Zinc carboxypeptidase
363646272645216Aldo/keto reductase family
14131514141585Myb-like DNA-binding domain
44444424Forkhead domain
2114Glycosyl hydrolases family 32 N-terminal domain
1111116Ribosomal protein L16p/L10e
22212211Ribosomal protein S14p/S29e
33334319FKBP-type peptidyl-prolyl cis-trans isomerase
1111116Glutathione peroxidase
22222212
87877845Flavodoxin
1111116Calreticulin family
43323419Common central domain of tyrosinase
981038846Aminotransferase class-V
1111116Ribonucleotide reductase, small chain
383738493836236DEAD/DEAH box helicase
727479757273445Helicase conserved C-terminal domain
1111116EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22222212Ribosomal protein L23
1111116Pyridoxal-dependent decarboxylase, C-terminal sheet domain
22222212Ribosomal protein L5
98766743Pyridoxal-dependent decarboxylase conserved domain
32222213Citrate synthase, C-terminal domain
55555530GHMP kinases N terminal domain
56755735Biotin carboxylase, N-terminal domain
1111116Tryptophan synthase alpha chain
14131512121581Pyridoxal-phosphate dependent enzyme
181821151622110NUDIX domain
44446527pfkB family carbohydrate kinase
56443628Glycosyl hydrolases family 28
22222212Ribosomal protein L3
22222212Ribosomal protein L11, RNA binding domain
1111146111265Histidine phosphatase superfamily (branch 1)
1111116Thymidylate synthase
112Lipoxygenase
44444424ATP synthase alpha/beta chain, C terminal domain
55555530Calponin homology (CH) domain
45645630Glutamine amidotransferases class-II
22222212Ribosomal protein S15
1111116Thaumatin family
22222212Fructose-1-6-bisphosphatase, N-terminal domain
1111116Ribonucleotide reductase, all-alpha domain
22222212Ribosomal protein S2
32222213SRF-type transcription factor (DNA-binding and dimerisation domain)
88868846GATA zinc finger
363539333336212Amino acid permease
33714523Prolyl oligopeptidase family
22222212Ribosomal protein L30p/L7e
88847843Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
66744633Aconitase family (aconitate hydratase)
2121129Glycosyl hydrolase family 10
33212314Glycosyl hydrolases family 17
22222212Ribosomal protein S5, N-terminal domain
1111116Nucleoside diphosphate kinase
1111116Ribosomal protein S10p/S20e
32233215Arrestin (or S-antigen), N-terminal domain
1111116Phosphoglucose isomerase
1111116Carbohydrate phosphorylase
1111116SecY translocase
1111116Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222212Ribosomal protein L6
43433320Polyprenyl synthetase
44544526Hexokinase
101011991160Dynamin family
2111117Transcription factor TFIID (or TATA-binding protein, TBP)
44444424Rieske [2Fe-2S] domain
11Phytochrome region
22Proton-conducting membrane transporter
789671047Biotin-requiring enzyme
1111116Phosphofructokinase
22222212Ribosomal protein S17
1111116Hydroxymethylglutaryl-coenzyme A reductase
33333318FGGY family of carbohydrate kinases, N-terminal domain
15152212131895Enoyl-CoA hydratase/isomerase
22222212Ribosomal protein S9/S16
22222212Transcription factor TFIIB repeat
67766638Cytidine and deoxycytidylate deaminase zinc-binding region
1111116Molybdopterin oxidoreductase
67716936Chromo (CHRromatin Organisation MOdifier) domain
44444424Phosphatidylinositol-specific phospholipase C, Y domain
55565632Phosphatidylinositol-specific phospholipase C, X domain
101013561256D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
22222212Malic enzyme, N-terminal domain
1113PEP-utilising enzyme, mobile domain
22211196-phosphogluconate dehydrogenase, C-terminal domain
1010888953Multicopper oxidase
11111010101062WW domain
1111116Ribosomal RNA adenine dimethylase
111115Yeast PIR protein repeat
128138147123121148805WD domain, G-beta repeat
55455529Heavy-metal-associated domain
43544323Adenylate kinase
22222212Phosphoglucomutase/phosphomannomutase, C-terminal domain
11222210Ribosomal protein S8
1111116Ribosomal protein S11
43444423LIM domain
1251514Matrixin
2211118Regulator of chromosome condensation (RCC1) repeat
22222212Ribosomal protein S13/S18
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
22222212chorismate binding enzyme
3333331860s Acidic ribosomal protein
44444424Prenyltransferase and squalene oxidase repeat
67656838Protein kinase C terminal domain
1111116Single-strand binding protein family
1111116S-adenosylmethionine synthetase, N-terminal domain
77777742Bromodomain
101011881057Acyl-CoA dehydrogenase, C-terminal domain
14131415141484Ubiquitin carboxyl-terminal hydrolase
1111116Ribosomal protein L36
34433522Ribonuclease T2 family
33333419HSF-type DNA-binding
22222212SRP54-type protein, GTPase domain
1111116Urease alpha-subunit, N-terminal domain
67855738Serine carboxypeptidase
88888848Phosphatidylinositol 3- and 4-kinase
22322213Transketolase, thiamine diphosphate binding domain
44433422Glycosyl hydrolases family 11
44544526Inositol monophosphatase family
44434423Glutaredoxin
54523423Isocitrate lyase family
22222212Serine hydroxymethyltransferase
22622317Iron-containing alcohol dehydrogenase
22222212Ribosomal protein L10
33363321KOW motif
11Negative factor, (F-Protein) or Nef
32323316RF-1 domain
54555529Sodium:solute symporter family
1111116Imidazoleglycerol-phosphate dehydratase
1111116DNA polymerase family A
1111116IMP dehydrogenase / GMP reductase domain
1111116Glucose-6-phosphate dehydrogenase, NAD binding domain
66766738Protein phosphatase 2C
33333318Nucleotidyl transferase
7913441047Carbonic anhydrase
1112117Phosphoribulokinase / Uridine kinase family
77666638Fatty acid desaturase
66666636MutS domain V
1111116Delta-aminolevulinic acid dehydratase
53533423Arginase family
66666636MCM P-loop domain
1111116Squalene/phytoene synthase
910108111260FHA domain
584957374064305AMP-binding enzyme
33333318G-protein alpha subunit
767781045HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
12121110101166His Kinase A (phospho-acceptor) domain
33332317Armadillo/beta-catenin-like repeat
293536242340187Tetratricopeptide repeat
44354424Ion transport protein
1111116DNA gyrase/topoisomerase IV, subunit A
11111111111166BRCA1 C Terminus (BRCT) domain
66666636Glycosyl transferases group 1
34434321Glycosyl transferase family 2
1113118SAM domain (Sterile alpha motif)
1111116linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
11Pectate lyase
32212212ribonuclease
1111116Urease, gamma subunit
55555530CoA-ligase
332942192143187Phosphopantetheine attachment site
33333318Formyl transferase
91110891057Metallopeptidase family M24
15141416141386Leucine Rich Repeat
576980224077345alpha/beta hydrolase fold
33333318RNA polymerase Rpb2, domain 6
34444423PB1 domain
22222212Staphylococcal nuclease homologue
10101010101060Rab-GTPase-TBC domain
1111116Tudor domain
1111116WH1 domain
44555326Zinc finger, ZZ type
1111116HRDC domain
99999954CBS domain
22222212Ribosomal protein L13
22222212Ribosomal protein L4/L1 family
1111116Clp protease
55555530S1 RNA binding domain
1111116HIUase/Transthyretin family
54433423AhpC/TSA family
44444424tRNA synthetases class I (W and Y)
112UvrD/REP helicase N-terminal domain
64944835Rhodanese-like domain
22222212Universal stress protein family
555261404965322Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
1111116C-terminal regulatory domain of Threonine dehydratase
22222212AIR synthase related protein, N-terminal domain
9109810955tRNA synthetase class II core domain (G, H, P, S and T)
1111116SpoU rRNA Methylase family
22222212Tetrapyrrole (Corrin/Porphyrin) Methylases
1111116Glycosyl transferase family, a/b domain
1111116PDZ domain
44333320Class II Aldolase and Adducin N-terminal domain
44444424Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
53535526Fes/CIP4, and EFC/F-BAR homology domain
56655532IQ calmodulin-binding motif
22222212Phosphoinositide 3-kinase family, accessory domain (PIK domain)
66556533Phospholipase D Active site motif
1111116Regulator of G protein signaling domain
44444424GTPase-activator protein for Ras-like GTPase
44444424RasGEF domain
44424422RasGEF N-terminal motif
88888848RhoGAP domain
56656634RhoGEF domain
35433321SPRY domain
43333319RNA polymerase Rpb1, domain 2
22333316Guanylate kinase
44444424Gelsolin repeat
9101078953UBA/TS-N domain
191820151719108PHD-finger
1111116GGL domain
66666636HECT-domain (ubiquitin-transferase)
112116Helix-hairpin-helix motif
1111116MSP (Major sperm protein) domain
55544528Ribonuclease III domain
33323317Region in Clathrin and VPS
33333318RanBP1 domain
22222212PPIC-type PPIASE domain
32322315Zn-finger in Ran binding protein and others
181620151516100Zinc finger C-x8-C-x5-C-x3-H type (and similar)
22212312Poly(ADP-ribose) polymerase catalytic domain
111115Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
586366515661355F-box domain
1111116Elongation factor 1 gamma, conserved domain
33333419Calpain family cysteine protease
22222212Copper fist DNA binding domain
65555632CRAL/TRIO domain
667591043BTB/POZ domain
56444427Ricin-type beta-trefoil lectin domain
1111116Inhibitor of Apoptosis domain
33333318Voltage gated chloride channel
23422417Caspase domain
571054839GDSL-like Lipase/Acylhydrolase
1111116Poly-adenylate binding protein, unique domain
312436252336175ABC transporter transmembrane region
11Integrase core domain
76766739FAD binding domain
211425101229111Condensation domain
1111116S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1111116HAMP domain
22222212ribosomal L5P family C-terminus
55555530Insulinase (Peptidase family M16)
33333419Dehydrogenase E1 component
1111116Lumazine binding domain
66656635Elongation factor G C-terminus
54644528HMGL-like
44444424DnaJ central domain
33111110Starch binding domain
22222212Ribosomal protein L1p/L10e family
9811991157Cation transporting ATPase, C-terminus
11101210111367Cation transporter/ATPase, N-terminus
2121129dUTPase
76744634Aconitase C-terminal domain
44333421Amino acid kinase family
1111116N-(5'phosphoribosyl)anthranilate (PRA) isomerase
202231171526131Acyl transferase domain
1111116Urease beta subunit
87766741Dihydrodipicolinate synthetase family
373536313540214haloacid dehalogenase-like hydrolase
7910771050Glycosyl hydrolases family 2
262729191930150Glycosyl hydrolases family 18
1111116Proliferating cell nuclear antigen, N-terminal domain
1113Translation initiation factor IF-3, C-terminal domain
11114Acylphosphatase
1221129Adenylosuccinate synthetase
1111116Asparaginase, N-terminal
22222212Peptidase S24-like
33222315Inorganic pyrophosphatase
11111313111271Glycosyl hydrolases family 16
33222214Glycosyl hydrolases family 15
181719881686NADH:flavin oxidoreductase / NADH oxidase family
544225223-hydroxyacyl-CoA dehydrogenase, C-terminal domain
33333318Glycosyl hydrolase family 20, catalytic domain
45455528HhH-GPD superfamily base excision DNA repair protein
2111117AIR carboxylase
13121812131886GMC oxidoreductase
22322314Asparagine synthase
222121141524117Fungal cellulose binding domain
55555530Septin
1121128EF-1 guanine nucleotide exchange domain
1111116Homoserine dehydrogenase
322119Flavin-binding monooxygenase-like
33333318tRNA synthetases class I (E and Q), catalytic domain
1111116tRNA synthetases class I (R)
44434423XPG N-terminal domain
15152610112097Metallo-beta-lactamase superfamily
23211110F5/8 type C domain
33322316Choline/Carnitine o-acyltransferase
2121118Putative esterase
1111116Ferrochelatase
22222212Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
22122110Arginosuccinate synthase
1111116Electron transfer flavoprotein FAD-binding domain
33333318RNB domain
54644629Dioxygenase
33422317CNH domain
2211219Diacylglycerol kinase catalytic domain
76847739Dual specificity phosphatase, catalytic domain
44
22333215P21-Rho-binding domain
12121212121272PX domain
33333318Ras association (RalGDS/AF-6) domain
55545529UBX domain
44444424VHS domain
1111116Phosphoinositide 3-kinase C2
22222212DAHP synthetase I family
13141912121888Carbon-nitrogen hydrolase
1121128N-acetyltransferase
1111116Prephenate dehydratase
44444424Syntaxin
55555530Pumilio-family RNA binding repeat
66656635Histone-like transcription factor (CBF/NF-Y) and archaeal histone
1111116Pterin binding enzyme
22222212ER lumen protein retaining receptor
22222212Glycoprotease family
1111116Histidinol dehydrogenase
44444424impB/mucB/samB family
11Ice nucleation protein repeat
1111116
1111116Ribosomal L15
1111116Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
111115Ribosomal L28 family
1111116Ribosomal L29 protein
1111116Ribosomal L39 protein
1111116Ribosomal S17
1111116Ribulose-phosphate 3 epimerase family
1111116Translationally controlled tumour protein
22222212Glycosyl hydrolase family 7
1111116RNA pseudouridylate synthase
44444424Histone deacetylase domain
43433421POT family
1111116PWWP domain
1313129121271SET domain
121311761261Isochorismatase family
33323317Permease family
1111116Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
44444424XPG I-region
1111116Acetokinase family
23233215DNA photolyase
112Cation-independent mannose-6-phosphate receptor repeat
1214Nitroreductase family
1091055948Sulfatase
11111166,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
22222212Acyl CoA binding protein
44434423Cullin family
86624531FAD binding domain
6413331241O-methyltransferase domain
44314420EamA-like transporter family
1111116
88888848ThiF family
1111116Ribosomal family S4e
7611231140Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
22222212Ammonium Transporter Family
76556534Sulfate permease family
1111116MATH domain
43433421Dehydratase family
34423420Transaldolase/Fructose-6-phosphate aldolase
33222315Mechanosensitive ion channel
1112117GTP cyclohydrolase II
11111163,4-dihydroxy-2-butanone 4-phosphate synthase
44434423Adaptor complexes medium subunit family
77778844Exonuclease
1121117Dipeptidyl peptidase IV (DPP IV) N-terminal region
112NB-ARC domain
17151713131792Glycosyl hydrolase family 3 N terminal domain
1111116Ribosomal protein L44
11Sodium:sulfate symporter transmembrane region
1111116DNA-dependent RNA polymerase
1111116FAD binding domain in molybdopterin dehydrogenase
1111116Glycosyl transferase family 4
1111116HCO3- transporter family
22222212Nucleosome assembly protein (NAP)
44444424Synaptobrevin
1111127GMP synthase C terminal domain
11114Phage lysozyme
77878845Adenosine/AMP deaminase
101012581257Oxidoreductase FAD-binding domain
34713422Thioesterase domain
22222212Histidine biosynthesis protein
55544427Glycosyltransferase family 20
22222313UDP-glucose/GDP-mannose dehydrogenase family, central domain
22222212Carbamoyl-phosphate synthase small chain, CPSase domain
21313313PAS fold
11
22222212Probable molybdopterin binding domain
44444424Sec1 family
22222212GDP dissociation inhibitor
55525527Sodium/hydrogen exchanger family
22222212RNA polymerase Rpb3/RpoA insert domain
55555530Initiation factor 2 subunit family
11114PQQ enzyme repeat
22212211Electron transfer flavoprotein domain
1111116Uricase
1111116Ribosomal S3Ae family
1111116Ribosomal L27 protein
1113118GTP1/OBG
44444424Gamma-glutamyltranspeptidase
1113Ribosomal L40e family
1111116GrpE
22222313TatD related DNase
1111116Inhibitor of apoptosis-promoting Bax1
1111116Eukaryotic DNA topoisomerase I, catalytic core
22334216Dynamin central region
334223176-O-methylguanine DNA methyltransferase, DNA binding domain
1113Bacteriorhodopsin-like protein