PFAM Domains • Sporormia fimetaria v1.0
Annotations/GenomesAltbr1CocheC5_3Dotse1Hyspu1Mycgr3Sepmu1Spofi1TotalAnnotation Description
PFAMs
5,9039,2958,1109,0166,4207,5277,24553,516
117 transmembrane receptor (rhodopsin family)
32414562424141304ATPase family associated with various cellular activities (AAA)
37423247433233266ABC transporter
444444428ATP synthase alpha/beta family, nucleotide-binding domain
112EGF-like domain
1314141314141496Elongation factor Tu GTP binding domain
111314101013879Helix-loop-helix DNA-binding domain
132322215Hsp20/alpha crystallin family
687777749Hsp70 protein
888999960KH domain
11Ribulose bisphosphate carboxylase large chain, catalytic domain
11111117SH2 domain
21222123232322155SH3 domain
9101010791065Actin
358837100413136368Ankyrin repeat
4862141540PAN domain
777677748ADP-ribosylation factor family
82210121911991Eukaryotic aspartyl protease
244444426Cyclic nucleotide-binding domain
22Cytochrome b(C-terminal)/b6/petD
22Cytochrome b/b6/petB
11111117Cytochrome c
211123212Double-stranded RNA binding motif
18181718201914124EF hand
211211194Fe-4S binding domain
243234220Fibronectin type III domain
1111116Globin
10921171614794Glutathione S-transferase, C-terminal domain
11111117Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
5861035845Homeodomain
442223320lactate/malate dehydrogenase, NAD binding domain
655554434Myosin head (motor domain)
6315678158737452654Cytochrome P450
84115105147113118104786Protein kinase domain
9171622151311103Pyridine nucleotide-disulphide oxidoreductase
22262427242323169Ras family
21272518222219154Response regulator receiver domain
2104532228RNase H
49586561575961410RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
314Reverse transcriptase (RNA-dependent DNA polymerase)
123222315Copper/zinc superoxide dismutase (SODC)
222222214Iron/manganese superoxide dismutases, alpha-hairpin domain
71241196958Subtilase family
74705578935135456Sugar (and other) transporter
1013121210101077Thioredoxin
522111113Trypsin
444443427Tubulin/FtsZ family, GTPase domain
154413321von Willebrand factor type A domain
56686154624657404Zinc finger, C2H2 type
35545273394860361Zinc finger, C3HC4 type (RING finger)
161238531158Zinc knuckle
222222214Protein-tyrosine phosphatase
981321331721249885842short chain dehydrogenase
52696075684943416Zinc-binding dehydrogenase
976676647Thiolase, N-terminal domain
1028102914139113Beta-ketoacyl synthase, N-terminal domain
4646464342Fe-2S iron-sulfur cluster binding domain
112Papain family cysteine protease
11121118Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
7810888857Glutamine amidotransferase class-I
1010101010101070TCP-1/cpn60 chaperonin family
332422319Glutamine synthetase, catalytic domain
222222214Triosephosphate isomerase
1319101313121595E1-E2 ATPase
51177628872Core histone H2A/H2B/H3/H4
11Copper binding proteins, plastocyanin/azurin family
661191312360Alpha amylase, catalytic domain
213222214Phorbol esters/diacylglycerol binding domain (C1 domain)
687599650Bacterial transferase hexapeptide (six repeats)
734465332tRNA synthetases class I (I, L, M and V)
596676645Cyclin, N-terminal domain
24291728171612143Carboxylesterase family
444444428DNA polymerase family B
344454428ATP synthase subunit C
11Legume lectin domain
784543637Peroxidase
871019106565Beta-lactamase
223213316C-5 cytosine-specific DNA methylase
23282731272025181Calcineurin-like phosphoesterase
10981645658Cellulase (glycosyl hydrolase family 5)
7771077853tRNA synthetases class II (D, K and N)
36413837403838268Mitochondrial carrier protein
112recA bacterial DNA recombination protein
717151513151496Aminotransferase class I and II
6898910858Phosphoribosyl transferase domain
1113121112121081Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
221211211Ribosomal protein S4/S9 N-terminal domain
222122213Ribosomal protein S12/S23
21115Bacterial regulatory helix-turn-helix proteins, AraC family
11111117Chaperonin 10 Kd subunit
1112141113131185C2 domain
16221817171719126PH domain
699888654bZIP transcription factor
20272220181514136Aldehyde dehydrogenase family
791921529110412396837Fungal Zn(2)-Cys(6) binuclear cluster domain
18242620242321156Cytochrome b5-like Heme/Steroid binding domain
347355330Oxidoreductase molybdopterin binding domain
918191212141498Oxidoreductase NAD-binding domain
21252327262223167SNF2 family N-terminal domain
222222214Ribosomal protein S7p/S5e
21222625242322163Ubiquitin-conjugating enzyme
778698651Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
11111117Hsp90 protein
122222213Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
9102411844Chitin recognition protein
313345221Cysteine-rich secretory protein family
21111118Ribosomal protein S3, C-terminal domain
343763329Cupin
122222213Annexin
1112218Eukaryotic-type carbonic anhydrase
11114Chalcone and stilbene synthases, N-terminal domain
2433333212-oxoacid dehydrogenases acyltransferase (catalytic domain)
446634431Catalase
11111117Disintegrin
6109798554Aminotransferase class-III
122222213Ribosomal protein S19
11111117DNA gyrase B
468945541Thiamine pyrophosphate enzyme, central domain
444453428Lyase
122222213Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11114Sodium:neurotransmitter symporter family
1111116Adenylate and Guanylate cyclase catalytic domain
1111116ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
11111117Indole-3-glycerol phosphate synthase
11Neurohypophysial hormones, N-terminal Domain
1113Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
1011101311101075Kinesin motor domain
30292638282837216DnaJ domain
1214141414141496Proteasome subunit
77115109453Major intrinsic protein
11111117ATP synthase
23232214Glycosyl hydrolase family 1
11111163'5'-cyclic nucleotide phosphodiesterase
1211117Profilin
21111118Ribosomal protein L22p/L17e
222222214Ribosomal protein L14p/L23e
101116161010982Ubiquitin family
254424526Cofilin/tropomyosin-type actin-binding protein
32222221514-3-3 protein
563534430Alkaline phosphatase
1083333636Zinc carboxypeptidase
22252835222118171Aldo/keto reductase family
11151517121615101Myb-like DNA-binding domain
245564430Forkhead domain
23214315Glycosyl hydrolases family 32 N-terminal domain
11111117Ribosomal protein L16p/L10e
13212312Ribosomal protein S14p/S29e
554444430FKBP-type peptidyl-prolyl cis-trans isomerase
11111117Glutathione peroxidase
112322112
698786549Flavodoxin
112Protamine P1
1111116Calreticulin family
8128137112180Common central domain of tyrosinase
389949749Aminotransferase class-V
11111117Ribonucleotide reductase, small chain
44393938464038284DEAD/DEAH box helicase
65777376727369505Helicase conserved C-terminal domain
11111117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222214Ribosomal protein L23
1112117Pyridoxal-dependent decarboxylase, C-terminal sheet domain
222122213Ribosomal protein L5
665775642Pyridoxal-dependent decarboxylase conserved domain
233232217Citrate synthase, C-terminal domain
555555535GHMP kinases N terminal domain
777667646Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
81410111111974Pyridoxal-phosphate dependent enzyme
11161418151313100NUDIX domain
554456635pfkB family carbohydrate kinase
65472529Glycosyl hydrolases family 28
111227Luciferase-like monooxygenase
322222215Ribosomal protein L3
122212212Ribosomal protein L11, RNA binding domain
1015151511141393Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
111115Lipoxygenase
444444428ATP synthase alpha/beta chain, C terminal domain
555455433Calponin homology (CH) domain
676444435Glutamine amidotransferases class-II
132222214Ribosomal protein S15
11111117Thaumatin family
221211110Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
232222215Ribosomal protein S2
222233216SRF-type transcription factor (DNA-binding and dimerisation domain)
577388644GATA zinc finger
22393554333836257Amino acid permease
283325528Prolyl oligopeptidase family
231211313Ribosomal protein L30p/L7e
612101179661Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
445454430Aconitase family (aconitate hydratase)
55132420Glycosyl hydrolase family 10
126516324Glycosyl hydrolases family 17
222222214Ribosomal protein S5, N-terminal domain
11111117Nucleoside diphosphate kinase
112Tetraspanin family
21112119Ribosomal protein S10p/S20e
342422421Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
11111117SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222214Ribosomal protein L6
583354331Polyprenyl synthetase
544533529Hexokinase
475766641Dynamin family
11112118Transcription factor TFIID (or TATA-binding protein, TBP)
457455434Rieske [2Fe-2S] domain
77Proton-conducting membrane transporter
6119889859Biotin-requiring enzyme
11111117Phosphofructokinase
222222214Ribosomal protein S17
11111117Hydroxymethylglutaryl-coenzyme A reductase
334344324FGGY family of carbohydrate kinases, N-terminal domain
1113Sodium:dicarboxylate symporter family
812221116131294Enoyl-CoA hydratase/isomerase
222222214Ribosomal protein S9/S16
222222214Transcription factor TFIIB repeat
567888547Cytidine and deoxycytidylate deaminase zinc-binding region
21111118Molybdopterin oxidoreductase
455625633Chromo (CHRromatin Organisation MOdifier) domain
233233319Phosphatidylinositol-specific phospholipase C, Y domain
335255427Phosphatidylinositol-specific phospholipase C, X domain
9910968859D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
122222213Malic enzyme, N-terminal domain
1222212126-phosphogluconate dehydrogenase, C-terminal domain
512132088470Multicopper oxidase
911810981166WW domain
11111117Ribosomal RNA adenine dimethylase
12635219Yeast PIR protein repeat
97127106107104102103746WD domain, G-beta repeat
643434428Heavy-metal-associated domain
444323424Adenylate kinase
322221214Phosphoglucomutase/phosphomannomutase, C-terminal domain
222111211Ribosomal protein S8
11121118Ribosomal protein S11
344345427LIM domain
1113Matrixin
11112129Regulator of chromosome condensation (RCC1) repeat
322122214Ribosomal protein S13/S18
22NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
222222214chorismate binding enzyme
44443332560s Acidic ribosomal protein
444444428Prenyltransferase and squalene oxidase repeat
567647641Protein kinase C terminal domain
1111116Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
678867850Bromodomain
14151615151114100Acyl-CoA dehydrogenase, C-terminal domain
15141515151715106Ubiquitin carboxyl-terminal hydrolase
11114Ribosomal protein L36
232222114Ribonuclease T2 family
243333321HSF-type DNA-binding
222222214SRP54-type protein, GTPase domain
11111117Urease alpha-subunit, N-terminal domain
91314161311480Serine carboxypeptidase
788888855Phosphatidylinositol 3- and 4-kinase
222322114Transketolase, thiamine diphosphate binding domain
452411421Glycosyl hydrolases family 11
554444329Inositol monophosphatase family
144424423Glutaredoxin
233523321Isocitrate lyase family
222222214Serine hydroxymethyltransferase
363542326Iron-containing alcohol dehydrogenase
122222213Ribosomal protein L10
533362325KOW motif
111115Ribosomal protein L34
11Negative factor, (F-Protein) or Nef
123223215RF-1 domain
134723222Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
11111117Glucose-6-phosphate dehydrogenase, NAD binding domain
686665542Protein phosphatase 2C
232322317Nucleotidyl transferase
123522318Carbonic anhydrase
2112118Phosphoribulokinase / Uridine kinase family
674566438Fatty acid desaturase
666666642MutS domain V
11111117Delta-aminolevulinic acid dehydratase
454544329Arginase family
676666643MCM P-loop domain
223222215Squalene/phytoene synthase
788658951FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
34576449514838341AMP-binding enzyme
343443425G-protein alpha subunit
7771077853HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
16222216181816128His Kinase A (phospho-acceptor) domain
132332317Armadillo/beta-catenin-like repeat
23312131232323175Tetratricopeptide repeat
223343219Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
101110111081171BRCA1 C Terminus (BRCT) domain
3671047643Glycosyl transferases group 1
455447332Glycosyl transferase family 2
631141319SAM domain (Sterile alpha motif)
11111117linker histone H1 and H5 family
12111118Ribosomal protein L7/L12 C-terminal domain
751122220Pectate lyase
1212118ribonuclease
1111116Urease, gamma subunit
354444428CoA-ligase
8291825152211128Phosphopantetheine attachment site
335344325Formyl transferase
5991188858Metallopeptidase family M24
13181217161415105Leucine Rich Repeat
22424653233331250alpha/beta hydrolase fold
333333321RNA polymerase Rpb2, domain 6
333333422PB1 domain
222122213Staphylococcal nuclease homologue
1212111111111280Rab-GTPase-TBC domain
11111117Tudor domain
11111117WH1 domain
335333323Zinc finger, ZZ type
331211314HRDC domain
8810109111066CBS domain
222222214Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
11111117Clp protease
243334322S1 RNA binding domain
111115HIUase/Transthyretin family
665564436AhpC/TSA family
444454429tRNA synthetases class I (W and Y)
11121118UvrD/REP helicase N-terminal domain
446555635Rhodanese-like domain
122122212Universal stress protein family
21453152243028231Acetyltransferase (GNAT) family
11111117SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
232222215AIR synthase related protein, N-terminal domain
897777853tRNA synthetase class II core domain (G, H, P, S and T)
222222214SpoU rRNA Methylase family
222222214Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
11212119PDZ domain
587755643Class II Aldolase and Adducin N-terminal domain
443423424Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
555545534Fes/CIP4, and EFC/F-BAR homology domain
665644637IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
565545535Phospholipase D Active site motif
11111117Regulator of G protein signaling domain
233333320GTPase-activator protein for Ras-like GTPase
344444427RasGEF domain
244424424RasGEF N-terminal motif
798868854RhoGAP domain
666746641RhoGEF domain
224422319SPRY domain
333333321RNA polymerase Rpb1, domain 2
11111117Guanylate kinase
333344424Gelsolin repeat
881296111165UBA/TS-N domain
17172416132016123PHD-finger
111115GGL domain
456546434HECT-domain (ubiquitin-transferase)
222322316Helix-hairpin-helix motif
11111117MSP (Major sperm protein) domain
3105445637Ribonuclease III domain
121212211Region in Clathrin and VPS
222212213RanBP1 domain
222222214PPIC-type PPIASE domain
11211118Zn-finger in Ran binding protein and others
18171720131714116Zinc finger C-x8-C-x5-C-x3-H type (and similar)
123112212Poly(ADP-ribose) polymerase catalytic domain
211127Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
506956114774368477F-box domain
11111117Elongation factor 1 gamma, conserved domain
231321315Calpain family cysteine protease
212212212Copper fist DNA binding domain
555545534CRAL/TRIO domain
21917324111398BTB/POZ domain
112116Ricin-type beta-trefoil lectin domain
11111117Inhibitor of Apoptosis domain
334444325Voltage gated chloride channel
132212112Caspase domain
119813361363GDSL-like Lipase/Acylhydrolase
11111117Poly-adenylate binding protein, unique domain
111115POLO box duplicated region
11NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
19201624191514127ABC transporter transmembrane region
112Integrase core domain
497655541FAD binding domain
51189811355Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1111116HAMP domain
222222214ribosomal L5P family C-terminus
556554737Insulinase (Peptidase family M16)
333333321Dehydrogenase E1 component
11111117Lumazine binding domain
466656639Elongation factor G C-terminus
447466435HMGL-like
244344425DnaJ central domain
224144219Starch binding domain
232223216Ribosomal protein L1p/L10e family
8105687852Cation transporting ATPase, C-terminus
9115887654Cation transporter/ATPase, N-terminus
1222119dUTPase
344454428Aconitase C-terminal domain
123433319Amino acid kinase family
11111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
92683213129109Acyl transferase domain
11111117Urease beta subunit
573632531Dihydrodipicolinate synthetase family
29382632303029214haloacid dehalogenase-like hydrolase
784473235Glycosyl hydrolases family 2
71699951368Glycosyl hydrolases family 18
1111116Proliferating cell nuclear antigen, N-terminal domain
1111116Acylphosphatase
11111117Adenylosuccinate synthetase
3112119Asparaginase, N-terminal
113323215Peptidase S24-like
11111117Inorganic pyrophosphatase
109810810863Glycosyl hydrolases family 16
222313114Glycosyl hydrolases family 15
7597106448NADH:flavin oxidoreductase / NADH oxidase family
2332423193-hydroxyacyl-CoA dehydrogenase, C-terminal domain
341512218Glycosyl hydrolase family 20, catalytic domain
344443628HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
19292229181812147GMC oxidoreductase
243212216Asparagine synthase
9111101941Fungal cellulose binding domain
565655638Septin
21111118EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
131128Flavin-binding monooxygenase-like
133433320tRNA synthetases class I (E and Q), catalytic domain
221311111tRNA synthetases class I (R)
444334426XPG N-terminal domain
8131713815680Metallo-beta-lactamase superfamily
1111127F5/8 type C domain
122222314Choline/Carnitine o-acyltransferase
11111117Putative esterase
11111117Ferrochelatase
222222214Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
12111118Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
333323320RNB domain
574638437Dioxygenase
233322318CNH domain
112212110Diacylglycerol kinase catalytic domain
4891068752Dual specificity phosphatase, catalytic domain
6511
232312316P21-Rho-binding domain
1113111211121181PX domain
232222316Ras association (RalGDS/AF-6) domain
575645638UBX domain
444344427VHS domain
11111117Phosphoinositide 3-kinase C2
222222214DAHP synthetase I family
813111399770Carbon-nitrogen hydrolase
113222112N-acetyltransferase
11111117Prephenate dehydratase
554534430Syntaxin
11Pentapeptide repeats (8 copies)
355555533Pumilio-family RNA binding repeat
576755742Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
222222214ER lumen protein retaining receptor
222222214Glycoprotease family
12111118Histidinol dehydrogenase
344454428impB/mucB/samB family
11111117
11111117Ribosomal L15
11111117Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
11111117Ribosomal L28 family
11111117Ribosomal L29 protein
1111116Ribosomal L39 protein
12111118Ribosomal S17
12111118Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
56141320Glycosyl hydrolase family 7
11111117RNA pseudouridylate synthase
444444428Histone deacetylase domain
583554434POT family
11111117PWWP domain
8171624101312100SET domain
6121016910669Isochorismatase family
351434323Permease family
11111117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
556355534XPG I-region
11111117Acetokinase family
434244122DNA photolyase
112NlpC/P60 family
11Cation-independent mannose-6-phosphate receptor repeat
11Nitroreductase family
226543123Sulfatase
111111176,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
122212212Acyl CoA binding protein
244434425Cullin family
2131315312866FAD binding domain
81272535666O-methyltransferase domain
26441