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PFAM Domains • Sistotrema raduloides OMC1660 v1.0
Annotations/GenomesBotbo1ClaPMI390Hydru2Schpa1Sisrad1Tulca1Tulcal1TotalAnnotation Description
PFAMs
9,0058,4786,8628,8589,77710,44811,88765,315
42424351444539306ATPase family associated with various cellular activities (AAA)
45695454514044357ABC transporter
444445429ATP synthase alpha/beta family, nucleotide-binding domain
11EGF-like domain
19171716161514114Elongation factor Tu GTP binding domain
91691212101179Helix-loop-helix DNA-binding domain
542786941Hsp20/alpha crystallin family
171215994722131Hsp70 protein
9788228870KH domain
11114SH2 domain
24252326154023176SH3 domain
1715101212101086Actin
1494614283316277Ankyrin repeat
8788771055ADP-ribosylation factor family
31423027234035228Eukaryotic aspartyl protease
433342322Cyclic nucleotide-binding domain
11Cytochrome b/b6/petB
11111128Cytochrome c
1351713971680Double-stranded RNA binding motif
201417212261101EF hand
1111264Fe-4S binding domain
1111116Fibronectin type III domain
11Globin
2397163151487Glutathione S-transferase, C-terminal domain
111122412Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
12879119763Homeodomain
1113Laminin EGF domain
3224222237lactate/malate dehydrogenase, NAD binding domain
565557437Myosin head (motor domain)
1588345206101129140862Cytochrome P450
3792921812922001,0777913,212Protein kinase domain
142113161191094Pyridine nucleotide-disulphide oxidoreductase
28352624323135211Ras family
131571211161690Response regulator receiver domain
8233445653RNase H
68626762596764449RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
213Reverse transcriptase (RNA-dependent DNA polymerase)
11248Copper/zinc superoxide dismutase (SODC)
332223217Iron/manganese superoxide dismutases, alpha-hairpin domain
1568624161893Subtilase family
22281328402729187Sugar (and other) transporter
12118912142187Thioredoxin
675484438Tubulin/FtsZ family, GTPase domain
6378125von Willebrand factor type A domain
81525256217142375Zinc finger, C2H2 type
6153455775610289Zinc finger, C3HC4 type (RING finger)
176282011910101Zinc knuckle
333242320Protein-tyrosine phosphatase
719548971054958523short chain dehydrogenase
40482042332830241Zinc-binding dehydrogenase
544446431Thiolase, N-terminal domain
811222117Beta-ketoacyl synthase, N-terminal domain
4343242222Fe-2S iron-sulfur cluster binding domain
11221119Enolase, C-terminal TIM barrel domain
988896755Glutamine amidotransferase class-I
1110121011121076TCP-1/cpn60 chaperonin family
634322222Glutamine synthetase, catalytic domain
11111218Triosephosphate isomerase
1210131116101284E1-E2 ATPase
12181517202022124Core histone H2A/H2B/H3/H4
112Copper binding proteins, plastocyanin/azurin family
49101110121167Alpha amylase, catalytic domain
553544430Phorbol esters/diacylglycerol binding domain (C1 domain)
432643426Bacterial transferase hexapeptide (six repeats)
433443425tRNA synthetases class I (I, L, M and V)
1510111119101490Cyclin, N-terminal domain
9191217166483Carboxylesterase family
445346430DNA polymerase family B
333345526ATP synthase subunit C
1111921126Peroxidase
12174443448Beta-lactamase
652544430C-5 cytosine-specific DNA methylase
31312426212828189Calcineurin-like phosphoesterase
1124412243246153Cellulase (glycosyl hydrolase family 5)
565565537tRNA synthetases class II (D, K and N)
37353334413934253Mitochondrial carrier protein
12161513171516104Aminotransferase class I and II
577646439Phosphoribosyl transferase domain
14151513151713102Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11112118Phosphoglycerate kinase
212222213Ribosomal protein S4/S9 N-terminal domain
232322317Ribosomal protein S12/S23
11Bacterial regulatory helix-turn-helix proteins, AraC family
211113110Chaperonin 10 Kd subunit
45131212131116122C2 domain
2117171910177108PH domain
5398114949bZIP transcription factor
21172415141918128Aldehyde dehydrogenase family
15014363118694148632Fungal Zn(2)-Cys(6) binuclear cluster domain
26322620281819169Cytochrome b5-like Heme/Steroid binding domain
11125Oxidoreductase molybdopterin binding domain
11871086656Oxidoreductase NAD-binding domain
21242622253029177SNF2 family N-terminal domain
222222315Ribosomal protein S7p/S5e
23212026272225164Ubiquitin-conjugating enzyme
655656538Isocitrate/isopropylmalate dehydrogenase
222231214Ribosomal Proteins L2, RNA binding domain
223222215Hsp90 protein
222229221Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111218Dihydrofolate reductase
11Chitin recognition protein
72431219Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
135110Cupin
11Annexin
3333343222-oxoacid dehydrogenases acyltransferase (catalytic domain)
329272227Catalase
1111116Disintegrin
31195726UDP-glucoronosyl and UDP-glucosyl transferase
655576539Aminotransferase class-III
222223316Ribosomal protein S19
11111117DNA gyrase B
231341115Thiamine pyrophosphate enzyme, central domain
335343324Lyase
222122213Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11111218Adenylate and Guanylate cyclase catalytic domain
11112118ATP synthase delta (OSCP) subunit
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
11121118Indole-3-glycerol phosphate synthase
414111113Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
1197916131176Kinesin motor domain
27332732262930204DnaJ domain
14152414181314112Proteasome subunit
1987488862Major intrinsic protein
11111117ATP synthase
41421113Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
11111218Profilin
222122213Ribosomal protein L22p/L17e
222222315Ribosomal protein L14p/L23e
17161818162427136Ubiquitin family
656457639Cofilin/tropomyosin-type actin-binding protein
1112211914-3-3 protein
21137Alkaline phosphatase
1111217Zinc carboxypeptidase
39512255245558304Aldo/keto reductase family
1411101379468Myb-like DNA-binding domain
54456111550Forkhead domain
112Glycosyl hydrolases family 32 N-terminal domain
11112129Ribosomal protein L16p/L10e
222222214Ribosomal protein S14p/S29e
5673971451FKBP-type peptidyl-prolyl cis-trans isomerase
1112117Glutathione peroxidase
222118
11Dehydrin
863878343Flavodoxin
111115111Calreticulin family
5331104632Common central domain of tyrosinase
5144776548Aminotransferase class-V
111511111Ribonucleotide reductase, small chain
58455062595952385DEAD/DEAH box helicase
103768396889780623Helicase conserved C-terminal domain
1113Fructose-bisphosphate aldolase class-I
21111219EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
111222211Ribosomal protein L23
11111117Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11111218Ribosomal protein L5
775692339Pyridoxal-dependent decarboxylase conserved domain
333343423Citrate synthase, C-terminal domain
554555635GHMP kinases N terminal domain
556655537Biotin carboxylase, N-terminal domain
11112129Tryptophan synthase alpha chain
101197139968Pyridoxal-phosphate dependent enzyme
1213141312151493NUDIX domain
545544431pfkB family carbohydrate kinase
218557643Glycosyl hydrolases family 28
222222214Ribosomal protein L3
222222214Ribosomal protein L11, RNA binding domain
10111699131280Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
445444429ATP synthase alpha/beta chain, C terminal domain
444354428Calponin homology (CH) domain
659535437Glutamine amidotransferases class-II
222222214Ribosomal protein S15
66'Cold-shock' DNA-binding domain
4171167440Thaumatin family
11211118Fructose-1-6-bisphosphatase, N-terminal domain
11112118Ribonucleotide reductase, all-alpha domain
222222214Ribosomal protein S2
222322316SRF-type transcription factor (DNA-binding and dimerisation domain)
9910129101271GATA zinc finger
31202721112210142Amino acid permease
663656537Prolyl oligopeptidase family
223121213Ribosomal protein L30p/L7e
126811971063Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
444455430Aconitase family (aconitate hydratase)
11455132058Glycosyl hydrolase family 10
512141115Glycosyl hydrolases family 17
222222214Ribosomal protein S5, N-terminal domain
222223417Nucleoside diphosphate kinase
11242212Tetraspanin family
122121211Ribosomal protein S10p/S20e
162352423Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
111122311Carbohydrate phosphorylase
11111218SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222232215Ribosomal protein L6
4312463335Polyprenyl synthetase
322222215Hexokinase
876111281567Dynamin family
11111117Transcription factor TFIID (or TATA-binding protein, TBP)
343334424Rieske [2Fe-2S] domain
11Bacterial regulatory proteins, lacI family
22116Phytochrome region
7771078753Biotin-requiring enzyme
11111117Phosphofructokinase
221223214Ribosomal protein S17
111122210Hydroxymethylglutaryl-coenzyme A reductase
233344423FGGY family of carbohydrate kinases, N-terminal domain
914189117775Enoyl-CoA hydratase/isomerase
222232215Ribosomal protein S9/S16
222322215Transcription factor TFIIB repeat
685755642Cytidine and deoxycytidylate deaminase zinc-binding region
11111117Molybdopterin oxidoreductase
74415510348Chromo (CHRromatin Organisation MOdifier) domain
121221110Phosphatidylinositol-specific phospholipase C, Y domain
231241215Phosphatidylinositol-specific phospholipase C, X domain
775766644D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
231214316Malic enzyme, N-terminal domain
111111176-phosphogluconate dehydrogenase, C-terminal domain
5314654340Multicopper oxidase
44Granulin
141079713969WW domain
222252217Ribosomal RNA adenine dimethylase
1601951671721382321301,194WD domain, G-beta repeat
334342221Heavy-metal-associated domain
333333321Adenylate kinase
222122314Phosphoglucomutase/phosphomannomutase, C-terminal domain
121221413Ribosomal protein S8
211222111Ribosomal protein S11
96867111158LIM domain
11Matrixin
432462526Regulator of chromosome condensation (RCC1) repeat
222222214Ribosomal protein S13/S18
232221113chorismate binding enzyme
36343552960s Acidic ribosomal protein
544484332Prenyltransferase and squalene oxidase repeat
776776848Protein kinase C terminal domain
11111117Single-strand binding protein family
1111116S-adenosylmethionine synthetase, N-terminal domain
1110141011101278Bromodomain
11171191210777Acyl-CoA dehydrogenase, C-terminal domain
15161515181714110Ubiquitin carboxyl-terminal hydrolase
1111127Ribosomal protein L36
351329730Ribonuclease T2 family
11Gonadotropin-releasing hormone
64435201961HSF-type DNA-binding
222222214SRP54-type protein, GTPase domain
11111117Urease alpha-subunit, N-terminal domain
717719104468Serine carboxypeptidase
9789881059Phosphatidylinositol 3- and 4-kinase
11112118Transketolase, thiamine diphosphate binding domain
211121026Glycosyl hydrolases family 11
311117WHEP-TRS domain
232222114Inositol monophosphatase family
554444531Glutaredoxin
322335220Isocitrate lyase family
411111110Serine hydroxymethyltransferase
211321111Iron-containing alcohol dehydrogenase
221222213Ribosomal protein L10
524543124KOW motif
21111118Ribosomal protein L34
11Negative factor, (F-Protein) or Nef
123Ribosomal protein L33
442232320RF-1 domain
11121118Sodium:solute symporter family
1111116Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
21111118IMP dehydrogenase / GMP reductase domain
11111117Glucose-6-phosphate dehydrogenase, NAD binding domain
766965645Protein phosphatase 2C
335222320Nucleotidyl transferase
624433224Carbonic anhydrase
1111116Phosphoribulokinase / Uridine kinase family
917159157779Fatty acid desaturase
686658645MutS domain V
11111117Delta-aminolevulinic acid dehydratase
222321113Arginase family
669666645MCM P-loop domain
121121210Squalene/phytoene synthase
8179999869FHA domain
41354231291716211AMP-binding enzyme
77101510221586G-protein alpha subunit
13881710111986HMG (high mobility group) box
11Cytochrome c oxidase subunit III
81047771053His Kinase A (phospho-acceptor) domain
52343412482Armadillo/beta-catenin-like repeat
453027361647484712Tetratricopeptide repeat
323332521Ion transport protein
11111218DNA gyrase/topoisomerase IV, subunit A
1010976101466BRCA1 C Terminus (BRCT) domain
567667441Glycosyl transferases group 1
544325427Glycosyl transferase family 2
66SAM domain (Sterile alpha motif)
332334422linker histone H1 and H5 family
11111117Ribosomal protein L7/L12 C-terminal domain
421212930Pectate lyase
3126ribonuclease
11111117Urease, gamma subunit
533333323CoA-ligase
1464642238Phosphopantetheine attachment site
222221213Formyl transferase
89101016101275Metallopeptidase family M24
14151416115176Leucine Rich Repeat
4059284513216212alpha/beta hydrolase fold
333344323RNA polymerase Rpb2, domain 6
556457638PB1 domain
422222216Staphylococcal nuclease homologue
989913101270Rab-GTPase-TBC domain
11112118Tudor domain
311112211WH1 domain
9176476857Zinc finger, ZZ type
11111229HRDC domain
9968610553CBS domain
222222214Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
11112118Clp protease
432444526S1 RNA binding domain
11111128HIUase/Transthyretin family
345557433AhpC/TSA family
544445430tRNA synthetases class I (W and Y)
13121311UvrD/REP helicase N-terminal domain
547484941Rhodanese-like domain
222212213Universal stress protein family
19181936162519152Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
1111116C-terminal regulatory domain of Threonine dehydratase
222222214AIR synthase related protein, N-terminal domain
667756542tRNA synthetase class II core domain (G, H, P, S and T)
11Phage integrase family
223223216Tetrapyrrole (Corrin/Porphyrin) Methylases
111113311Glycosyl transferase family, a/b domain
143621118Class II Aldolase and Adducin N-terminal domain
332444525Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
445547837Fes/CIP4, and EFC/F-BAR homology domain
564623228IQ calmodulin-binding motif
322221315Phosphoinositide 3-kinase family, accessory domain (PIK domain)
653434328Phospholipase D Active site motif
111141514Regulator of G protein signaling domain
444554430GTPase-activator protein for Ras-like GTPase
73913127960RasGEF domain
85910107655RasGEF N-terminal motif
1612141310161495RhoGAP domain
1613121414131597RhoGEF domain
333533323SPRY domain
333333321RNA polymerase Rpb1, domain 2
11111117Guanylate kinase
333524424Gelsolin repeat
87710791462UBA/TS-N domain
19161619162017123PHD-finger
1111116GGL domain
4427544553HECT-domain (ubiquitin-transferase)
322222114Helix-hairpin-helix motif
211122211MSP (Major sperm protein) domain
1698647353Ribonuclease III domain
232245422Region in Clathrin and VPS
333334423RanBP1 domain
221222112PPIC-type PPIASE domain
11Phosphotyrosine interaction domain (PTB/PID)
221312112Zn-finger in Ran binding protein and others
26192421143314151Zinc finger C-x8-C-x5-C-x3-H type (and similar)
11111117B-box zinc finger
51151342673Poly(ADP-ribose) polymerase catalytic domain
232221921Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
2663656832524272631,383F-box domain
211112311Elongation factor 1 gamma, conserved domain
244226828Calpain family cysteine protease
221232214Copper fist DNA binding domain
476673740CRAL/TRIO domain
18141269182550206BTB/POZ domain
1146315140Ricin-type beta-trefoil lectin domain
11111218Inhibitor of Apoptosis domain
333334322Voltage gated chloride channel
111281113064Caspase domain
616578171271GDSL-like Lipase/Acylhydrolase
11112129Poly-adenylate binding protein, unique domain
11111117POLO box duplicated region
24381622261923168ABC transporter transmembrane region
9312Integrase core domain
733663331FAD binding domain
621110Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11111117HAMP domain
222222214ribosomal L5P family C-terminus
655654536Insulinase (Peptidase family M16)
444454429Dehydrogenase E1 component
11111128Lumazine binding domain
696774645Elongation factor G C-terminus
454444429HMGL-like
444444428DnaJ central domain
431212316Starch binding domain
222233317Ribosomal protein L1p/L10e family
644556535Cation transporting ATPase, C-terminus
766665642Cation transporter/ATPase, N-terminus
1111217dUTPase
444454429Aconitase C-terminal domain
333344323Amino acid kinase family
11111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
626254126Acyl transferase domain
11111117Urease beta subunit
221232315Dihydrodipicolinate synthetase family
2724242813248148haloacid dehalogenase-like hydrolase
231125317Glycosyl hydrolases family 2
13978124356Glycosyl hydrolases family 18
11211118Proliferating cell nuclear antigen, N-terminal domain
112Translation initiation factor IF-3, C-terminal domain
13228Acylphosphatase
11111117Adenylosuccinate synthetase
11111319Asparaginase, N-terminal
332322217Peptidase S24-like
11111117Inorganic pyrophosphatase
56491121047Glycosyl hydrolases family 16
542225323Glycosyl hydrolases family 15
9131012129772NADH:flavin oxidoreductase / NADH oxidase family
3222122143-hydroxyacyl-CoA dehydrogenase, C-terminal domain
21121119Glycosyl hydrolase family 20, catalytic domain
436544430HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
27362130181316161GMC oxidoreductase
322232216Asparagine synthase
295712027110152396Fungal cellulose binding domain
556555536Septin
11112118EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
1013679146Flavin-binding monooxygenase-like
433333322tRNA synthetases class I (E and Q), catalytic domain
211128217tRNA synthetases class I (R)
664654536XPG N-terminal domain
7881379658Metallo-beta-lactamase superfamily
112217F5/8 type C domain
648455436Choline/Carnitine o-acyltransferase
11111117Putative esterase
311112312Glycosyl hydrolase family 9
11111117Ferrochelatase
422222216Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
11111117Arginosuccinate synthase
113112110Electron transfer flavoprotein FAD-binding domain
433334323RNB domain
241514320Dioxygenase
583744637CNH domain
221222213Diacylglycerol kinase catalytic domain
10591695862Dual specificity phosphatase, catalytic domain
11111117MyTH4 domain
4333391136P21-Rho-binding domain
1414141315131396PX domain
532234322Ras association (RalGDS/AF-6) domain
444446531UBX domain
544456634VHS domain
11111117Phosphoinositide 3-kinase C2
222222315DAHP synthetase I family
555554433Carbon-nitrogen hydrolase
211318N-acetyltransferase
11111218Prephenate dehydratase
344222320Syntaxin
555645535Pumilio-family RNA binding repeat
666766845Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
11113119ER lumen protein retaining receptor
322222215tRNA N6-adenosine threonylcarbamoyltransferase
11111117Histidinol dehydrogenase
333434323impB/mucB/samB family
11PPE family
112116
11111117Ribosomal L15
211231313Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
11111117Ribosomal prokaryotic L21 protein
11111117Ribosomal L28 family
119111115Ribosomal L29 protein
11111128Ribosomal L39 protein
11111128Ribosomal S17
1111127Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
7512927455Glycosyl hydrolase family 7
11Ring hydroxylating alpha subunit (catalytic domain)
223342218RNA pseudouridylate synthase
666769646Histone deacetylase domain
411222113POT family
213211212PWWP domain
22131017231923127SET domain
433452223Isochorismatase family
222422216Permease family
11111117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
5651276546XPG I-region
11111117Acetokinase family
12121119DNA photolyase
111115Cation-independent mannose-6-phosphate receptor repeat
22Nitroreductase family
12126Cytosol aminopeptidase family, catalytic domain
112Sulfatase
12111176,7-dimethyl-8-ribityllumazine synthase
11111117Ribosomal protein S16
323333320Acyl CoA binding protein
465457637Cullin family
11111117Elongation factor TS
6224