PFAM Domains • Rhodosporidium diobovatum 08-225 v1.0
Annotations/GenomesAgahy1Hetpy1Mellp1Pucst1Rhodia1_1RhodotJ31_1Rhoglu1Rhosp1Rhoto1Rhoto_ATCC26217_1Rhoto_IFO0559_1Rhoto_IFO0880_4Rhoto_IFO1236_1Schco3TotalAnnotation Description
PFAMs
5,7225,5785,1326,2277,4087,2017,5705,7286,4587,6766,5657,6836,3378,59093,875
3033272631333433363437343443465ATPase family associated with various cellular activities (AAA)
3028282832293030303032302946432ABC transporter
4444444455544459ATP synthase alpha/beta family, nucleotide-binding domain
111211119EGF-like domain
1314121214141413131412141315187Elongation factor Tu GTP binding domain
997968789797913117Helix-loop-helix DNA-binding domain
115916Hsp20/alpha crystallin family
87713781078981097118Hsp70 protein
8888665775757996KH domain
1111111119SH2 domain
2325252613121523231623152327289SH3 domain
995910101099109101011130Actin
17171416422171921831860209Ankyrin repeat
213PAN domain
7778777777777799ADP-ribosylation factor family
1113231410121212121212131226194Eukaryotic aspartyl protease
3322333333333340Cyclic nucleotide-binding domain
11Cytochrome b(C-terminal)/b6/petD
112Cytochrome b/b6/petB
111111111111113Cytochrome c
1111233221329Double-stranded RNA binding motif
20162221122131521521520166EF hand
111212221134Fe-4S binding domain
11112222113Fibronectin type III domain
112Globin
744684126151117121515136Glutathione S-transferase, C-terminal domain
1122222222222125Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
88265446656661183Homeodomain
1113Laminin EGF domain
2232222221422230lactate/malate dehydrogenase, NAD binding domain
5537555555655672Myosin head (motor domain)
1310232011101571514241614114306Cytochrome P450
108142118124100100107981011111071041021621,584Protein kinase domain
11118611101012131014111311151Pyridine nucleotide-disulphide oxidoreductase
2525302326242521232523252327345Ras family
1114101417181716171718171812216Response regulator receiver domain
221421819471051RNase H
5564707354535752565457565770828RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
21319842Reverse transcriptase (RNA-dependent DNA polymerase)
31013Copper/zinc superoxide dismutase (SODC)
2132112122222326Iron/manganese superoxide dismutases, alpha-hairpin domain
45911336366666377Subtilase family
3422292138363634374138414141489Sugar (and other) transporter
111181516141411141415161313185Thioredoxin
4556555555656572Tubulin/FtsZ family, GTPase domain
241212212320von Willebrand factor type A domain
30357941111314333416341334100487Zinc finger, C2H2 type
34313675455353944243871423Zinc finger, C3HC4 type (RING finger)
916484835581461761322220Zinc knuckle
2515333222232237Protein-tyrosine phosphatase
51293126413947445147524952112671short chain dehydrogenase
2219131225232726322833293247368Zinc-binding dehydrogenase
3455666666666475Thiolase, N-terminal domain
1111111111111316Beta-ketoacyl synthase, N-terminal domain
54323334434343482Fe-2S iron-sulfur cluster binding domain
1111121211111116Enolase, C-terminal TIM barrel domain
123Cytochrome C and Quinol oxidase polypeptide I
112Cytochrome C oxidase subunit II, periplasmic domain
68768887888878105Glutamine amidotransferase class-I
9109141011109111111111110147TCP-1/cpn60 chaperonin family
11ATP synthase A chain
2244222122233334Glutamine synthetase, catalytic domain
1111121111211116Triosephosphate isomerase
8121317131315912151215119174E1-E2 ATPase
1529191521151717152125221522268Core histone H2A/H2B/H3/H4
11111111210Copper binding proteins, plastocyanin/azurin family
13633434334331255Alpha amylase, catalytic domain
2331332153444543Phorbol esters/diacylglycerol binding domain (C1 domain)
6587985667686491Bacterial transferase hexapeptide (six repeats)
2358454334343354tRNA synthetases class I (I, L, M and V)
11912611111111111110111113149Cyclin, N-terminal domain
392371110798788926145Carboxylesterase family
4446444456744464DNA polymerase family B
3342433333333343ATP synthase subunit C
1222222222222227Peroxidase
22244444343339Beta-lactamase
223222222221630C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
2118181816171720211621172124265Calcineurin-like phosphoesterase
2178878219161667Cellulase (glycosyl hydrolase family 5)
5447444444445663tRNA synthetases class II (D, K and N)
3333324136373636363636373637502Mitochondrial carrier protein
1615111720181717191920171716239Aminotransferase class I and II
6659333663636772Phosphoribosyl transferase domain
1313141312121211121211121214173Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111111111111114Phosphoglycerate kinase
2222222222122227Ribosomal protein S4/S9 N-terminal domain
2232222222222229Ribosomal protein S12/S23
1111111111111114Chaperonin 10 Kd subunit
1314101010101011121112111218164C2 domain
2020141511101318221222132219231PH domain
7943111110813141215106133bZIP transcription factor
1012121813131411121412141216183Aldehyde dehydrogenase family
5254341963505645766473616688801Fungal Zn(2)-Cys(6) binuclear cluster domain
1717152121212319232224202225290Cytochrome b5-like Heme/Steroid binding domain
1213123333123Oxidoreductase molybdopterin binding domain
677576868888711102Oxidoreductase NAD-binding domain
1820302722212222222322222222315SNF2 family N-terminal domain
2222224233333235Ribosomal protein S7p/S5e
1717191821192019192020191921268Ubiquitin-conjugating enzyme
5556576755555576Isocitrate/isopropylmalate dehydrogenase
2221222222222227Ribosomal Proteins L2, RNA binding domain
2222232332333335Hsp90 protein
2224222222222230Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1112111111111115Dihydrofolate reductase
11Chitin recognition protein
54106333332332555Cysteine-rich secretory protein family
1111211111111115Ribosomal protein S3, C-terminal domain
1135Cupin
11Annexin
22Eukaryotic-type carbonic anhydrase
23546343444433522-oxoacid dehydrogenases acyltransferase (catalytic domain)
2185322222222237Catalase
1123112111111118Disintegrin
11111117UDP-glucoronosyl and UDP-glucosyl transferase
7645555555555572Aminotransferase class-III
2222222222222228Ribosomal protein S19
1111111111111114DNA gyrase B
3141443433333443Thiamine pyrophosphate enzyme, central domain
3332333333333341Lyase
1211222222222225Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11Sodium:neurotransmitter symporter family
1211111111111115Adenylate and Guanylate cyclase catalytic domain
1111111111111114ATP synthase delta (OSCP) subunit
1111111111111114Orotidine 5'-phosphate decarboxylase / HUMPS family
2111111221212220Indole-3-glycerol phosphate synthase
11Neurohypophysial hormones, N-terminal Domain
122111111111216Aromatic amino acid lyase
1111111111111114Pyruvate kinase, barrel domain
99111288888888810123Kinesin motor domain
2624503227292827292828282930415DnaJ domain
1414141315141313151516161614202Proteasome subunit
231612587866666394Major intrinsic protein
1112111111111115ATP synthase
1135Glycosyl hydrolase family 1
11111111111111143'5'-cyclic nucleotide phosphodiesterase
1111111111111114Profilin
1121222112121120Ribosomal protein L22p/L17e
2221222222222227Ribosomal protein L14p/L23e
121011917131914221923202013222Ubiquitin family
4424444444444757Cofilin/tropomyosin-type actin-binding protein
222222222222222814-3-3 protein
2122222332323332Alkaline phosphatase
11111111111213Zinc carboxypeptidase
2210121018161714171718171760265Aldo/keto reductase family
12141011669111181181111139Myb-like DNA-binding domain
5432222222222840Forkhead domain
122111111111216Glycosyl hydrolases family 32 N-terminal domain
1111222112121119Ribosomal protein L16p/L10e
2212222222122226Ribosomal protein S14p/S29e
4344333333333547FKBP-type peptidyl-prolyl cis-trans isomerase
1111111111111114Glutathione peroxidase
11211222214
4655333443434758Flavodoxin
11Protamine P1
1111111111111114Calreticulin family
213Common central domain of tyrosinase
5534665556555974Aminotransferase class-V
2111222222222326Ribonucleotide reductase, small chain
3639454848485041445144494266651DEAD/DEAH box helicase
647091120747473737675747274971,107Helicase conserved C-terminal domain
1112111111111115EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
2211222222222226Ribosomal protein L23
1111111111111114Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1211111111111115Ribosomal protein L5
5351555555566768Pyridoxal-dependent decarboxylase conserved domain
1222333134342336Citrate synthase, C-terminal domain
5555555555655571GHMP kinases N terminal domain
4565666666666579Biotin carboxylase, N-terminal domain
1122112122211120Tryptophan synthase alpha chain
766107696889778104Pyridoxal-phosphate dependent enzyme
111015129121211121311131114166NUDIX domain
4334544444444657pfkB family carbohydrate kinase
31111111313Glycosyl hydrolases family 28
2222222222222329Ribosomal protein L3
2121222122222225Ribosomal protein L11, RNA binding domain
139681011111111111111119143Histidine phosphatase superfamily (branch 1)
1114112122222123Thymidylate synthase
4441534566544459ATP synthase alpha/beta chain, C terminal domain
4445444444444558Calponin homology (CH) domain
4444222542424548Glutamine amidotransferases class-II
2323333222231233Ribosomal protein S15
223232545455547'Cold-shock' DNA-binding domain
33144343444431155Thaumatin family
1112112111111116Fructose-1-6-bisphosphatase, N-terminal domain
211111111111114Ribonucleotide reductase, all-alpha domain
2223222222222229Ribosomal protein S2
3432445344444452SRF-type transcription factor (DNA-binding and dimerisation domain)
1010671111111012111291112143GATA zinc finger
14211715891017211422111921219Amino acid permease
5524657556565773Prolyl oligopeptidase family
1111222112121119Ribosomal protein L30p/L7e
6437664776745981Histidine phosphatase superfamily (branch 2)
1111111111111114Respiratory-chain NADH dehydrogenase, 30 Kd subunit
4446444444444458Aconitase family (aconitate hydratase)
54514Glycosyl hydrolase family 10
12111111111214Glycosyl hydrolases family 17
2222222222222228Ribosomal protein S5, N-terminal domain
1221222222221225Nucleoside diphosphate kinase
11Tetraspanin family
1111222112121220Ribosomal protein S10p/S20e
341365345453551Arrestin (or S-antigen), N-terminal domain
1111111111111114Phosphoglucose isomerase
11311111111114Carbohydrate phosphorylase
1111111111111114SecY translocase
1111111111111215Respiratory-chain NADH dehydrogenase, 49 Kd subunit
2222222222222228Ribosomal protein L6
3366333333333651Polyprenyl synthetase
2232222222222229Hexokinase
5536465335363966Dynamin family
1111111111111114Transcription factor TFIID (or TATA-binding protein, TBP)
4243232442424242Rieske [2Fe-2S] domain
11Bacterial regulatory proteins, lacI family
11111117Phytochrome region
33Proton-conducting membrane transporter
579811788999989116Biotin-requiring enzyme
1125121111131122Phosphofructokinase
2212223212222227Ribosomal protein S17
1113111111111116Hydroxymethylglutaryl-coenzyme A reductase
3223222222222331FGGY family of carbohydrate kinases, N-terminal domain
11Sodium:dicarboxylate symporter family
47997887778779104Enoyl-CoA hydratase/isomerase
2222222222222228Ribosomal protein S9/S16
3222322222222230Transcription factor TFIIB repeat
5652988599898697Cytidine and deoxycytidylate deaminase zinc-binding region
1113222222222125Molybdopterin oxidoreductase
65335674841161129108Chromo (CHRromatin Organisation MOdifier) domain
2111111111111418Phosphatidylinositol-specific phospholipase C, Y domain
2221122113131325Phosphatidylinositol-specific phospholipase C, X domain
9631674644455771D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
1211222222222326Malic enzyme, N-terminal domain
21121121121222216-phosphogluconate dehydrogenase, C-terminal domain
43189245445454677Multicopper oxidase
9676654685857991WW domain
1112222212121222Ribosomal RNA adenine dimethylase
98971051091041001021041071011091051061321,479WD domain, G-beta repeat
1422222222222431Heavy-metal-associated domain
3354333333333345Adenylate kinase
2121322222222126Phosphoglucomutase/phosphomannomutase, C-terminal domain
2111222222221123Ribosomal protein S8
1111221211113119Ribosomal protein S11
6566556466766680LIM domain
4222545235353348Regulator of chromosome condensation (RCC1) repeat
2222222322222229Ribosomal protein S13/S18
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
1222222222222227chorismate binding enzyme
333333333333334260s Acidic ribosomal protein
5787223443434460Prenyltransferase and squalene oxidase repeat
6769343574737778Protein kinase C terminal domain
121111111111114Single-strand binding protein family
1111111111111114S-adenosylmethionine synthetase, N-terminal domain
8910989998989811124Bromodomain
281091211111112111211129141Acyl-CoA dehydrogenase, C-terminal domain
1615181517151514161616161517221Ubiquitin carboxyl-terminal hydrolase
1111111111111114Ribosomal protein L36
11111111111112Ribonuclease T2 family
67641113128101491394126HSF-type DNA-binding
2223222222222229SRP54-type protein, GTPase domain
1111111111111215Urease alpha-subunit, N-terminal domain
7511204444444441089Serine carboxypeptidase
871188787888888112Phosphatidylinositol 3- and 4-kinase
2111121211111319Transketolase, thiamine diphosphate binding domain
11Glycosyl hydrolases family 11
111212222222121WHEP-TRS domain
3222333333333743Inositol monophosphatase family
5456555555555570Glutaredoxin
2222222222222329Isocitrate lyase family
1111111111111114Serine hydroxymethyltransferase
1111222233333431Iron-containing alcohol dehydrogenase
1222222222222227Ribosomal protein L10
4663445455655567KOW motif
121111111111Ribosomal protein L34
11111117Ribosomal protein L33
3222333323232336RF-1 domain
2223222232123Sodium:solute symporter family
1112111111111115Imidazoleglycerol-phosphate dehydratase
1111111111111114DNA polymerase family A
1111111111111114IMP dehydrogenase / GMP reductase domain
112111111111215Glucose-6-phosphate dehydrogenase, NAD binding domain
56556666666661388Protein phosphatase 2C
22422232233321