PFAM Domains • Calosphaeria pulchella
Annotations/GenomesBotdo1Calpu1Fusox1Maggr1Necha2Neucr2Thite2Trire2Verda1TotalAnnotation Description
PFAMs
10,7798,36511,7378,20110,1428,0347,3376,5078,09379,195
211157 transmembrane receptor (rhodopsin family)
117 transmembrane receptor (Secretin family)
634350525343434441432ATPase family associated with various cellular activities (AAA)
575575507637364647479ABC transporter
44444444436ATP synthase alpha/beta family, nucleotide-binding domain
141414131418141414129Elongation factor Tu GTP binding domain
1214619122013913163Helix-loop-helix DNA-binding domain
331433333237Hsp20/alpha crystallin family
789778871071Hsp70 protein
988981398981KH domain
1111111119SH2 domain
222219232326232421203SH3 domain
10101197111071085Actin
134501436213153416374751Ankyrin repeat
6217417112151PAN domain
77878977868ADP-ribosylation factor family
172319191819221615168Eukaryotic aspartyl protease
44744644340Cyclic nucleotide-binding domain
1111111119Cytochrome c
12126Double-stranded RNA binding motif
211816182118202016168EF hand
222213112164Fe-4S binding domain
22223321320Fibronectin type III domain
12412212217Globin
2172171869105104Glutathione S-transferase, C-terminal domain
1111111119Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
137127127651180Homeodomain
221333432335lactate/malate dehydrogenase, NAD binding domain
112Low-density lipoprotein receptor repeat class B
11Lipocalin / cytosolic fatty-acid binding protein family
55555544543Myosin head (motor domain)
2537515012814241596965982Cytochrome P450
1381221431081491341341061131,147Protein kinase domain
181730122413131415156Pyridine nucleotide-disulphide oxidoreductase
242625262528242324225Ras family
261223131517111316146Response regulator receiver domain
8362621230RNase H
626559595874625954552RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
112Retroviral aspartyl protease
541111Reverse transcriptase (RNA-dependent DNA polymerase)
22313332221Copper/zinc superoxide dismutase (SODC)
22222322320Iron/manganese superoxide dismutases, alpha-hairpin domain
16122526298101518159Subtilase family
110881936424738427693951Sugar (and other) transporter
9141791411121111108Thioredoxin
21243111318Trypsin
54547546545Tubulin/FtsZ family, GTPase domain
541123622338von Willebrand factor type A domain
6858745412464606752621Zinc finger, C2H2 type
533543403842403240363Zinc finger, C3HC4 type (RING finger)
989761275669Zinc knuckle
21222222217Protein-tyrosine phosphatase
2001302229625966941181021,287short chain dehydrogenase
110571295515533425356690Zinc-binding dehydrogenase
65958556756Thiolase, N-terminal domain
362717331511191711186Beta-ketoacyl synthase, N-terminal domain
676466554492Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
11112311112Enolase, C-terminal TIM barrel domain
123Cytochrome C and Quinol oxidase polypeptide I
99108121187882Glutamine amidotransferase class-I
1010101091010101089TCP-1/cpn60 chaperonin family
43534542535Glutamine synthetase, catalytic domain
21122222216Triosephosphate isomerase
181431192813121618169E1-E2 ATPase
788881097873Core histone H2A/H2B/H3/H4
11Copper binding proteins, plastocyanin/azurin family
8711881044767Alpha amylase, catalytic domain
22222222218Phorbol esters/diacylglycerol binding domain (C1 domain)
13811999781589Bacterial transferase hexapeptide (six repeats)
34347346337tRNA synthetases class I (I, L, M and V)
6510612777868Cyclin, N-terminal domain
501548204511141219234Carboxylesterase family
44444444436DNA polymerase family B
44565454542ATP synthase subunit C
951074646758Peroxidase
1611199356687117Beta-lactamase
33242231323C-5 cytosine-specific DNA methylase
232634233132292727252Calcineurin-like phosphoesterase
1471291451341189Cellulase (glycosyl hydrolase family 5)
77977888768tRNA synthetases class II (D, K and N)
383843384740353539353Mitochondrial carrier protein
112recA bacterial DNA recombination protein
251728162514121619172Aminotransferase class I and II
811891210108783Phosphoribosyl transferase domain
10101010101110101091Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111111119Phosphoglycerate kinase
22222222218Ribosomal protein S4/S9 N-terminal domain
22222322219Ribosomal protein S12/S23
1113Bacterial regulatory helix-turn-helix proteins, AraC family
1111111119Chaperonin 10 Kd subunit
111523161614111414134C2 domain
181816161728151914161PH domain
178271111991114117bZIP transcription factor
271955186516152022257Aldehyde dehydrogenase family
2061592821084781391221921671,853Fungal Zn(2)-Cys(6) binuclear cluster domain
272427223523222124225Cytochrome b5-like Heme/Steroid binding domain
62635424436Oxidoreductase molybdopterin binding domain
221532192515141418174Oxidoreductase NAD-binding domain
302427243328262523240SNF2 family N-terminal domain
22222222218Ribosomal protein S7p/S5e
202120192020202020180Ubiquitin-conjugating enzyme
761079757765Isocitrate/isopropylmalate dehydrogenase
22122222217Ribosomal Proteins L2, RNA binding domain
1111111119Hsp90 protein
22222222218Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111111119Dihydrofolate reductase
8381312232354Chitin recognition protein
52664313434Cysteine-rich secretory protein family
1111111119Ribosomal protein S3, C-terminal domain
56726113637Cupin
22323322322Annexin
21422111216Eukaryotic-type carbonic anhydrase
1112211110Chalcone and stilbene synthases, N-terminal domain
434343333302-oxoacid dehydrogenases acyltransferase (catalytic domain)
45728317542Catalase
11123111112Disintegrin
133511216UDP-glucoronosyl and UDP-glucosyl transferase
91118619978996Aminotransferase class-III
22222222218Ribosomal protein S19
11111211110DNA gyrase B
8518410634664Thiamine pyrophosphate enzyme, central domain
55835333540Lyase
22222222218Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1633417Sodium:neurotransmitter symporter family
213Ferritin-like domain
11111211110Adenylate and Guanylate cyclase catalytic domain
1111111119ATP synthase delta (OSCP) subunit
21111111110Orotidine 5'-phosphate decarboxylase / HUMPS family
11111211110Indole-3-glycerol phosphate synthase
12111129Aromatic amino acid lyase
11111211110Pyruvate kinase, barrel domain
11101110111310111198Kinesin motor domain
262628262833262626245DnaJ domain
141414141416141413127Proteasome subunit
137865117351Major intrinsic protein
1111111119ATP synthase
62625212329Glycosyl hydrolase family 1
111112111103'5'-cyclic nucleotide phosphodiesterase
11111211110Profilin
1111111119Ribosomal protein L22p/L17e
12222222217Ribosomal protein L14p/L23e
12101310111488995Ubiquitin family
33753643539Cofilin/tropomyosin-type actin-binding protein
2222232221914-3-3 protein
53565723541Alkaline phosphatase
4191172241555Zinc carboxypeptidase
363541235419232733291Aldo/keto reductase family
171618151220161414142Myb-like DNA-binding domain
44544444437Forkhead domain
41145621336Glycosyl hydrolases family 32 N-terminal domain
1111111119Ribosomal protein L16p/L10e
31221221216Ribosomal protein S14p/S29e
43333443330FKBP-type peptidyl-prolyl cis-trans isomerase
1111111119Glutathione peroxidase
32222222219
12812913667679Flavodoxin
112Protamine P1
1111111119Calreticulin family
126111459102675Common central domain of tyrosinase
1191075873767Aminotransferase class-V
1111111119Ribonucleotide reductase, small chain
404140415641384939385DEAD/DEAH box helicase
837678768780737570698Helicase conserved C-terminal domain
21111111110EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22222222218Ribosomal protein L23
31411111114Pyridoxal-dependent decarboxylase, C-terminal sheet domain
21222222116Ribosomal protein L5
7410510656659Pyridoxal-dependent decarboxylase conserved domain
32323422223Citrate synthase, C-terminal domain
75555655548GHMP kinases N terminal domain
96769655659Biotin carboxylase, N-terminal domain
21111111110Tryptophan synthase alpha chain
14101812231181213121Pyridoxal-phosphate dependent enzyme
161320141818141514142NUDIX domain
46654954649pfkB family carbohydrate kinase
91012392741167Glycosyl hydrolases family 28
121141111Luciferase-like monooxygenase
22222222218Ribosomal protein L3
22222222218Ribosomal protein L11, RNA binding domain
12111811131212615110Histidine phosphatase superfamily (branch 1)
22Chloramphenicol acetyltransferase
1111111119Thymidylate synthase
1212118Lipoxygenase
44444444436ATP synthase alpha/beta chain, C terminal domain
44555855546Calponin homology (CH) domain
65454544542Glutamine amidotransferases class-II
23222212218Ribosomal protein S15
11'Cold-shock' DNA-binding domain
111111118Thaumatin family
11222212215Fructose-1-6-bisphosphatase, N-terminal domain
1111111119Ribonucleotide reductase, all-alpha domain
22122222217Ribosomal protein S2
32422222726SRF-type transcription factor (DNA-binding and dimerisation domain)
968981086670GATA zinc finger
574382298722213331405Amino acid permease
53566321334Prolyl oligopeptidase family
22221222217Ribosomal protein L30p/L7e
11914128744877Histidine phosphatase superfamily (branch 2)
1111111119Respiratory-chain NADH dehydrogenase, 30 Kd subunit
65658444446Aconitase family (aconitate hydratase)
64563461439Glycosyl hydrolase family 10
65422521633Glycosyl hydrolases family 17
22122222217Ribosomal protein S5, N-terminal domain
1111111119Nucleoside diphosphate kinase
11Tetraspanin family
12112111212Ribosomal protein S10p/S20e
85355443542Arrestin (or S-antigen), N-terminal domain
1111111119Phosphoglucose isomerase
1111111119Carbohydrate phosphorylase
1111111119SecY translocase
1111111119Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22122222217Ribosomal protein L6
95393343342Polyprenyl synthetase
54444444538Hexokinase
9108119789677Dynamin family
12111121111Transcription factor TFIID (or TATA-binding protein, TBP)
6311514444556Rieske [2Fe-2S] domain
112Phytochrome region
1081089866873Biotin-requiring enzyme
1111111119Phosphofructokinase
12222222217Ribosomal protein S17
21611111115Hydroxymethylglutaryl-coenzyme A reductase
44344333432FGGY family of carbohydrate kinases, N-terminal domain
11125Sodium:dicarboxylate symporter family
17722823771212115Enoyl-CoA hydratase/isomerase
22222222218Ribosomal protein S9/S16
23222322220Transcription factor TFIIB repeat
99878966870Cytidine and deoxycytidylate deaminase zinc-binding region
11221121213Molybdopterin oxidoreductase
67201141271674Chromo (CHRromatin Organisation MOdifier) domain
241257434445Phosphatidylinositol-specific phospholipase C, Y domain
341459636656Phosphatidylinositol-specific phospholipase C, X domain
171116814675993D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
22122322218Malic enzyme, N-terminal domain
11112PEP-utilising enzyme, mobile domain
423112211176-phosphogluconate dehydrogenase, C-terminal domain
2014181612101186115Multicopper oxidase
11Granulin
11999119910986WW domain
1111111119Ribosomal RNA adenine dimethylase
1111116Yeast PIR protein repeat
1061031231041261141081231031,010WD domain, G-beta repeat
75858555553Heavy-metal-associated domain
63334444334Adenylate kinase
21122112214Phosphoglucomutase/phosphomannomutase, C-terminal domain
12122312115Ribosomal protein S8
21122121113Ribosomal protein S11
44545544338LIM domain
112Matrixin
13432231120Regulator of chromosome condensation (RCC1) repeat
22222222218Ribosomal protein S13/S18
11
22322322321chorismate binding enzyme
3333343332860s Acidic ribosomal protein
43555444539Prenyltransferase and squalene oxidase repeat
68674855655Protein kinase C terminal domain
11111211110Single-strand binding protein family
11111211110S-adenosylmethionine synthetase, N-terminal domain
78988887770Bromodomain
167198149881099Acyl-CoA dehydrogenase, C-terminal domain
161514141517141514134Ubiquitin carboxyl-terminal hydrolase
111111118Ribosomal protein L36
31322113218Ribonuclease T2 family
33533333329HSF-type DNA-binding
22222222218SRP54-type protein, GTPase domain
1211211110Urease alpha-subunit, N-terminal domain
171613617455891Serine carboxypeptidase
88688888870Phosphatidylinositol 3- and 4-kinase
23425112222Transketolase, thiamine diphosphate binding domain
13353253530Glycosyl hydrolases family 11
53535554439Inositol monophosphatase family
44443533434Glutaredoxin
74624322131Isocitrate lyase family
22323322221Serine hydroxymethyltransferase
42516112224Iron-containing alcohol dehydrogenase
22222322219Ribosomal protein L10
43256426335KOW motif
11114Ribosomal protein L34
23322332121RF-1 domain
67436235339Sodium:solute symporter family
1111111119Imidazoleglycerol-phosphate dehydratase
1111111119DNA polymerase family A
1111111119IMP dehydrogenase / GMP reductase domain
1111111119Glucose-6-phosphate dehydrogenase, NAD binding domain
64657756551Protein phosphatase 2C
34322223223Nucleotidyl transferase
33744344335Carbonic anhydrase
11111112110Phosphoribulokinase / Uridine kinase family
97758556759Fatty acid desaturase
66666666654MutS domain V
1111111119Delta-aminolevulinic acid dehydratase
85745513341Arginase family
66666666654MCM P-loop domain
22212311216Squalene/phytoene synthase
11Bacterial extracellular solute-binding proteins, family 3
111179910108883FHA domain
774075485028273739421AMP-binding enzyme
33434443331G-protein alpha subunit
8991061597982HMG (high mobility group) box
21102010111381013116His Kinase A (phospho-acceptor) domain
32223333223Armadillo/beta-catenin-like repeat
232730272526242418224Tetratricopeptide repeat
43223345531Ion transport protein
11111211110DNA gyrase/topoisomerase IV, subunit A
118121010107111291BRCA1 C Terminus (BRCT) domain
771067966765Glycosyl transferases group 1
45629433642Glycosyl transferase family 2
31214323221SAM domain (Sterile alpha motif)
11111211110linker histone H1 and H5 family
1111111119Ribosomal protein L7/L12 C-terminal domain
61021211445Pectate lyase
52321211219ribonuclease
11211211111Urease, gamma subunit
44744435338CoA-ligase
39272127198171915192Phosphopantetheine attachment site
22323323424Formyl transferase
88118111088779Metallopeptidase family M24
131414131419151614132Leucine Rich Repeat
703772404124262233365alpha/beta hydrolase fold
33333333327RNA polymerase Rpb2, domain 6
33444444434PB1 domain
22222222218Staphylococcal nuclease homologue
111099101010101089Rab-GTPase-TBC domain
1111111119Tudor domain
1111111119WH1 domain
43546435337Zinc finger, ZZ type
21121121213HRDC domain
1010121081199786CBS domain
22222322219Ribosomal protein L13
22222322219Ribosomal protein L4/L1 family
1111111119Clp protease
44453535437S1 RNA binding domain
11111311111HIUase/Transthyretin family
64335323231AhpC/TSA family
64644444440tRNA synthetases class I (W and Y)
111211119UvrD/REP helicase N-terminal domain
451156464449Rhodanese-like domain
22222522221Universal stress protein family
443571336131314029375Acetyltransferase (GNAT) family
1111111119SecE/Sec61-gamma subunits of protein translocation complex
11111211110C-terminal regulatory domain of Threonine dehydratase
22222222218AIR synthase related protein, N-terminal domain
8998910108980tRNA synthetase class II core domain (G, H, P, S and T)
21111111110SpoU rRNA Methylase family
11Phage integrase family
22222222319Tetrapyrrole (Corrin/Porphyrin) Methylases
21111111110Glycosyl transferase family, a/b domain
11121118PDZ domain
775512223245Class II Aldolase and Adducin N-terminal domain
441144544444Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
55443453538Fes/CIP4, and EFC/F-BAR homology domain
45354845543IQ calmodulin-binding motif
22222222218Phosphoinositide 3-kinase family, accessory domain (PIK domain)
46465665648Phospholipase D Active site motif
11812211118Regulator of G protein signaling domain
34444744337GTPase-activator protein for Ras-like GTPase
44444644337RasGEF domain
44442642333RasGEF N-terminal motif
7988915108781RhoGAP domain
65565765651RhoGEF domain
23433353329SPRY domain
33233333326RNA polymerase Rpb1, domain 2
11323223320Guanylate kinase
45454444539Gelsolin repeat
10988610971077UBA/TS-N domain
141614151618151513136PHD-finger
11111117GGL domain
666661056657HECT-domain (ubiquitin-transferase)
31112222115Helix-hairpin-helix motif
1111111119MSP (Major sperm protein) domain
54463544338Ribonuclease III domain
12231332320Region in Clathrin and VPS
33232433225RanBP1 domain
22222322219PPIC-type PPIASE domain
12222432321Zn-finger in Ran binding protein and others
161316111915171513135Zinc finger C-x8-C-x5-C-x3-H type (and similar)
12421121216Poly(ADP-ribose) polymerase catalytic domain
11111117Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
7547514712144465143525F-box domain
1111111119Elongation factor 1 gamma, conserved domain
331045533440Calpain family cysteine protease
222322215Copper fist DNA binding domain
45656665649CRAL/TRIO domain
33813118855798BTB/POZ domain
221324115Ricin-type beta-trefoil lectin domain
12111111110Inhibitor of Apoptosis domain
44433433331Voltage gated chloride channel
22524222223Caspase domain
1251811211010516108GDSL-like Lipase/Acylhydrolase
1111111119Poly-adenylate binding protein, unique domain
112POLO box duplicated region
302833263920192519239ABC transporter transmembrane region
491115Integrase core domain
10712912556672FAD binding domain
21111318103410595Condensation domain
11111211110S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1111111119HAMP domain
22222222218ribosomal L5P family C-terminus
651355665556Insulinase (Peptidase family M16)
43435333331Dehydrogenase E1 component
1111111119Lumazine binding domain
66666855553Elongation factor G C-terminus
76666644550HMGL-like
44444644438DnaJ central domain
11Sulfotransferase domain
14232331423Starch binding domain
22222222218Ribosomal protein L1p/L10e family
861611187691293Cation transporting ATPase, C-terminus
109221317871013109Cation transporter/ATPase, N-terminus
21111111110dUTPase
65558444445Aconitase C-terminal domain
43434433331Amino acid kinase family
11111211110N-(5'phosphoribosyl)anthranilate (PRA) isomerase
352617331510161710179Acyl transferase domain
1211211110Urease beta subunit
10812713456974Dihydrodipicolinate synthetase family
413453315029303131330haloacid dehalogenase-like hydrolase
568811687665Glycosyl hydrolases family 2
15152813239131918153Glycosyl hydrolases family 18
11111111