PFAM Domains • Cladorrhinum bulbillosum DJ3 v1.0
Annotations/GenomesChagl_1Clabul1Myche1Neucr2Neucr_trp3_1Neudi1Neute_matA2Neute_mat_a1Podan2Podcur1Spoth2Thian1Thiap1Thiar1Thihy1Thite2TotalAnnotation Description
PFAMs
7,86510,6356,9758,0347,1135,6156,8276,8598,06710,4876,9516,3287,7207,9867,2967,337122,095
1111157 transmembrane receptor (rhodopsin family)
3147 transmembrane receptor (Secretin family)
46643943413441405055413946485243722ATPase family associated with various cellular activities (AAA)
42463637363434343848383435403336601ABC transporter
444444444444444464ATP synthase alpha/beta family, nucleotide-binding domain
14161418141314141414141413141514229Elongation factor Tu GTP binding domain
11151320141414131515131412141213222Helix-loop-helix DNA-binding domain
353332335733323354Hsp20/alpha crystallin family
914987777811988988137Hsp70 protein
888139999978991099143KH domain
1111111111111114SH2 domain
23152226212322222212212321232223341SH3 domain
911101197991010991010810151Actin
98373353474042468519293174736741815Ankyrin repeat
11111321331119PAN domain
8779777777778877117ADP-ribosylation factor family
18241619171717172227161616161422294Eukaryotic aspartyl protease
344644444444444465Cyclic nucleotide-binding domain
11Beta/Gamma crystallin
111111111111111116Cytochrome c
1111116Double-stranded RNA binding motif
173191817211615183171717171620251EF hand
11311112111111174Fe-4S binding domain
312333332123333240Fibronectin type III domain
222222222222122130Globin
10576647676841110109116Glutathione S-transferase, C-terminal domain
111111111111111116Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
656765667557576695Homeodomain
344433334443232352lactate/malate dehydrogenase, NAD binding domain
545554445455444471Myosin head (motor domain)
831155341414141411021275234638949591,031Cytochrome P450
117154114134102931011001021311171151011531131341,881Protein kinase domain
16131313121110101612121015171213205Pyridine nucleotide-disulphide oxidoreductase
23282428252424252629242327252724406Ras family
12161217141414141516111013161311218Response regulator receiver domain
353221332331252141RNase H
61506074626261606151586262626362971RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
112Retroviral aspartyl protease
107124114Reverse transcriptase (RNA-dependent DNA polymerase)
342322222411222337Copper/zinc superoxide dismutase (SODC)
222322222222222233Iron/manganese superoxide dismutases, alpha-hairpin domain
132888678820218814131110191Subtilase family
47424038395840403442421750443542650Sugar (and other) transporter
1114111110910101315111111121212183Thioredoxin
11111111111111115Trypsin
354544444444444465Tubulin/FtsZ family, GTPase domain
51266355423677264von Willebrand factor type A domain
51215764577455545324534855645760847Zinc finger, C2H2 type
324404240354040447414040424240569Zinc finger, C3HC4 type (RING finger)
473612956593137810127162Zinc knuckle
223232233222222236Protein-tyrosine phosphatase
8486606657535454828856469110562941,138short chain dehydrogenase
51413233283227274838322450493342587Zinc-binding dehydrogenase
565556555555555582Thiolase, N-terminal domain
292917119999231818715301219264Beta-ketoacyl synthase, N-terminal domain
5356555553545555762Fe-2S iron-sulfur cluster binding domain
111111118Papain family cysteine protease
111322221111111122Enolase, C-terminal TIM barrel domain
77Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
9109119999810998888143Glutamine amidotransferase class-I
10101010101010101010101010101010160TCP-1/cpn60 chaperonin family
11ATP synthase A chain
454544445344444466Glutamine synthetase, catalytic domain
222222222221222231Triosephosphate isomerase
13221413131313131622141714141512238E1-E2 ATPase
78710877788888889126Core histone H2A/H2B/H3/H4
7971099998118611784132Alpha amylase, catalytic domain
222221212222142231Phorbol esters/diacylglycerol binding domain (C1 domain)
88999899108878777131Bacterial transferase hexapeptide (six repeats)
563337333534535465tRNA synthetases class I (I, L, M and V)
586768555756766799Cyclin, N-terminal domain
1819101199991421921111714183Carboxylesterase family
444444444444444464DNA polymerase family B
556454336655666580ATP synthase subunit C
354633334743645467Peroxidase
111356626699561246106Beta-lactamase
233222223333333342C-5 cytosine-specific DNA methylase
24222532272526262718242323292629406Calcineurin-like phosphoesterase
810755455101182611613116Cellulase (glycosyl hydrolase family 5)
7778777797778778117tRNA synthetases class II (D, K and N)
36363640373536363736373737383635585Mitochondrial carrier protein
1316121412911121415121315151512210Aminotransferase class I and II
9591098881048101191110139Phosphoribosyl transferase domain
10101011101010101010101010101010161Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
111111111111111116Phosphoglycerate kinase
222221222222222231Ribosomal protein S4/S9 N-terminal domain
22232222212222230Ribosomal protein S12/S23
112Bacterial regulatory helix-turn-helix proteins, AraC family
11111111111111115Chaperonin 10 Kd subunit
13131314121212121310131111141411198C2 domain
148172818181718178171718171815265PH domain
7128977778178810889140bZIP transcription factor
12171316131313131415131111141015213Aldehyde dehydrogenase family
10612611613912498100103126133101861421371201221,879Fungal Zn(2)-Cys(6) binuclear cluster domain
18242123212121212322212322232222348Cytochrome b5-like Heme/Steroid binding domain
232433333323332244Oxidoreductase molybdopterin binding domain
14131215151415151715131419171414236Oxidoreductase NAD-binding domain
29352328252324242422232321242726401SNF2 family N-terminal domain
222222221222122230Ribosomal protein S7p/S5e
20212020191719192023202020212120320Ubiquitin-conjugating enzyme
655755555555555583Isocitrate/isopropylmalate dehydrogenase
22222222222221229Ribosomal Proteins L2, RNA binding domain
111111111111111116Hsp90 protein
222222222222222232Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111111111111111116Dihydrofolate reductase
772221224722633355Chitin recognition protein
131333333311121133Cysteine-rich secretory protein family
111111111111111116Ribosomal protein S3, C-terminal domain
35211111342122130Cupin
323322222232333239Annexin
11111111211111116Eukaryotic-type carbonic anhydrase
111111112211112119Chalcone and stilbene synthases, N-terminal domain
3333333333333333482-oxoacid dehydrogenases acyltransferase (catalytic domain)
332333334222433144Catalase
111111111111212118Disintegrin
1811113532228UDP-glucoronosyl and UDP-glucosyl transferase
7769665577667877106Aminotransferase class-III
222222222222222232Ribosomal protein S19
111211111111111117DNA gyrase B
554644445444544369Thiamine pyrophosphate enzyme, central domain
233333333333333347Lyase
222222222222222232Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
112Ferritin-like domain
111211111111111117Adenylate and Guanylate cyclase catalytic domain
111111111111111116ATP synthase delta (OSCP) subunit
111111111111111116Orotidine 5'-phosphate decarboxylase / HUMPS family
111211111111111117Indole-3-glycerol phosphate synthase
11111111111111115Aromatic amino acid lyase
111211111121111118Pyruvate kinase, barrel domain
1111111310101010111110101010810166Kinesin motor domain
25262333282526272824242526262626418DnaJ domain
13141416141212121414131414141414218Proteasome subunit
11111111141312121Major intrinsic protein
111111111111111116ATP synthase
11121111111212118Glycosyl hydrolase family 1
1112111111111111173'5'-cyclic nucleotide phosphodiesterase
11Protease inhibitor/seed storage/LTP family
111211221111111119Profilin
121111211111115Ribosomal protein L22p/L17e
222221222222222231Ribosomal protein L14p/L23e
1091014111010109121181111118165Ubiquitin family
355653445534545470Cofilin/tropomyosin-type actin-binding protein
23232222232222223514-3-3 protein
524755556244655272Alkaline phosphatase
343222224533333246Zinc carboxypeptidase
18211419181718182222141227231923305Aldo/keto reductase family
178172017171717178171414151616247Myb-like DNA-binding domain
444444334444444462Forkhead domain
3222113115Glycosyl hydrolases family 32 N-terminal domain
121111111211111118Ribosomal protein L16p/L10e
22222122222222229Ribosomal protein S14p/S29e
344444444444444463FKBP-type peptidyl-prolyl cis-trans isomerase
111111111111111116Glutathione peroxidase
1222222222222227
6766666697668766104Flavodoxin
11Protamine P1
111111111111111116Calreticulin family
14279985771439931212910194Common central domain of tyrosinase
71088838889878997125Aminotransferase class-V
111111111111111116Ribonucleotide reductase, small chain
46453941404740413745393839404338658DEAD/DEAH box helicase
858471807571697077687272747679731,196Helicase conserved C-terminal domain
111111111111111116EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222222222222232Ribosomal protein L23
112111111121111118Pyridoxal-dependent decarboxylase, C-terminal sheet domain
212222222222222231Ribosomal protein L5
595666666656666595Pyridoxal-dependent decarboxylase conserved domain
242422223322222238Citrate synthase, C-terminal domain
555665565566555585GHMP kinases N terminal domain
455655555555555580Biotin carboxylase, N-terminal domain
111111111111111116Tryptophan synthase alpha chain
9101011109101011111081112108160Pyridoxal-phosphate dependent enzyme
13191418171517172015131518171414256NUDIX domain
756963455565666589pfkB family carbohydrate kinase
122222232321731Glycosyl hydrolases family 28
14422221119Luciferase-like monooxygenase
222222122222222231Ribosomal protein L3
222222222222222232Ribosomal protein L11, RNA binding domain
131312121071010131311916101312184Histidine phosphatase superfamily (branch 1)
111111111111111116Thymidylate synthase
1221111122211119Lipoxygenase
444444444444444464ATP synthase alpha/beta chain, C terminal domain
455855555555554581Calponin homology (CH) domain
534544445344444465Glutamine amidotransferases class-II
222221112222222128Ribosomal protein S15
111111111110Thaumatin family
221222222211223129Fructose-1-6-bisphosphatase, N-terminal domain
111111111111111116Ribonucleotide reductase, all-alpha domain
222222122222222231Ribosomal protein S2
222222222222222232SRF-type transcription factor (DNA-binding and dimerisation domain)
47710666688678878112GATA zinc finger
18131922202020202312192020221421303Amino acid permease
453321223733443251Prolyl oligopeptidase family
122222222222222231Ribosomal protein L30p/L7e
575765667765778498Histidine phosphatase superfamily (branch 2)
111111111111111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
654444444444444467Aconitase family (aconitate hydratase)
774444448641075684Glycosyl hydrolase family 10
122541333122222237Glycosyl hydrolases family 17
222222222222212231Ribosomal protein S5, N-terminal domain
111111111111111116Nucleoside diphosphate kinase
11Tetraspanin family
222112112112222125Ribosomal protein S10p/S20e
344443444444444462Arrestin (or S-antigen), N-terminal domain
111111111111111116Phosphoglucose isomerase
111111111111111116Carbohydrate phosphorylase
111111111111111116SecY translocase
111111111111111116Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222221112212222228Ribosomal protein L6
443333333443646460Polyprenyl synthetase
444434444444434462Hexokinase
913877766815899898137Dynamin family
212111112222222226Transcription factor TFIID (or TATA-binding protein, TBP)
343444444444545464Rieske [2Fe-2S] domain
2111128Phytochrome region
3216Proton-conducting membrane transporter
7778777777777766111Biotin-requiring enzyme
111111111111111116Phosphofructokinase
222221221222222230Ribosomal protein S17
111111111111111116Hydroxymethylglutaryl-coenzyme A reductase
333333333333333348FGGY family of carbohydrate kinases, N-terminal domain
11111117Sodium:dicarboxylate symporter family
799777779108910787128Enoyl-CoA hydratase/isomerase
222222222222222232Ribosomal protein S9/S16
222322222222222233Transcription factor TFIIB repeat
6779676698867566109Cytidine and deoxycytidylate deaminase zinc-binding region
221111111111222222Molybdopterin oxidoreductase
2878129467887887137147Chromo (CHRromatin Organisation MOdifier) domain
443444444434434360Phosphatidylinositol-specific phospholipase C, Y domain
453655444634434367Phosphatidylinositol-specific phospholipase C, X domain
676665556766767798D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
222322222222222233Malic enzyme, N-terminal domain
1111116PEP-utilising enzyme, mobile domain
1112222221111212246-phosphogluconate dehydrogenase, C-terminal domain
815610101010101320651312711166Multicopper oxidase
112Granulin
9989888810119991099143WW domain
111111111111111116Ribosomal RNA adenine dimethylase
1111116Yeast PIR protein repeat
1131121011141041001041061141291061021151261281081,782WD domain, G-beta repeat
454554444544545571Heavy-metal-associated domain
333444444333345458Adenylate kinase
122112112221222125Phosphoglucomutase/phosphomannomutase, C-terminal domain
222322222222212131Ribosomal protein S8
121111111211111219Ribosomal protein S11
454544444444444466LIM domain
1438Matrixin
242222233212213