PFAM Domains • Bimuria novae-zelandiae CBS 107.79 v1.0
Annotations/GenomesBimnz1Bysci1Karrh1Lenfl1Maseb1Stasp1Trepe1Veren1TotalAnnotation Description
PFAMs
9,5839,8309,56610,2358,78210,39410,3829,03577,807
117 transmembrane receptor (rhodopsin family)
6057575348557653459ATPase family associated with various cellular activities (AAA)
4747475539435352383ABC transporter
4444444432ATP synthase alpha/beta family, nucleotide-binding domain
211116EGF-like domain
1514141415141414114Elongation factor Tu GTP binding domain
111010141016121194Helix-loop-helix DNA-binding domain
3333333425Hsp20/alpha crystallin family
9988898766Hsp70 protein
9879888865KH domain
112Ribulose bisphosphate carboxylase large chain, catalytic domain
111111118SH2 domain
2525232423252423192SH3 domain
101011101011101082Actin
112137811804987119113878Ankyrin repeat
3243483128PAN domain
7797778759ADP-ribosylation factor family
69911811161585Eukaryotic aspartyl protease
4444454433Cyclic nucleotide-binding domain
111111118Cytochrome c
2221232317Double-stranded RNA binding motif
1718171818181718141EF hand
1111111184Fe-4S binding domain
5532453229Fibronectin type III domain
111111118Globin
1319172217181610132Glutathione S-transferase, C-terminal domain
111111118Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
977881110969Homeodomain
4343353429lactate/malate dehydrogenase, NAD binding domain
1113Low-density lipoprotein receptor repeat class B
4544444534Myosin head (motor domain)
151180158184951631861271,244Cytochrome P450
1381981271721221402541381,289Protein kinase domain
2024182119182121162Pyridine nucleotide-disulphide oxidoreductase
2424252623262824200Ras family
2019232322322017176Response regulator receiver domain
1352215120RNase H
6162606258596560487RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
3433332223Copper/zinc superoxide dismutase (SODC)
2222222216Iron/manganese superoxide dismutases, alpha-hairpin domain
181614159121311108Subtilase family
82799283851139167692Sugar (and other) transporter
111013131113111294Thioredoxin
4363541228Trypsin
4444444432Tubulin/FtsZ family, GTPase domain
3636435636von Willebrand factor type A domain
6667626965978765578Zinc finger, C2H2 type
61826964746110251564Zinc finger, C3HC4 type (RING finger)
8649369752Zinc knuckle
2322233219Protein-tyrosine phosphatase
1601381711871511801851601,332short chain dehydrogenase
7473739362958577632Zinc-binding dehydrogenase
7676676752Thiolase, N-terminal domain
2236203520242238217Beta-ketoacyl synthase, N-terminal domain
75877676532Fe-2S iron-sulfur cluster binding domain
123Papain family cysteine protease
111111219Enolase, C-terminal TIM barrel domain
91098988869Glutamine amidotransferase class-I
101110101010101081TCP-1/cpn60 chaperonin family
3433333325Glutamine synthetase, catalytic domain
2322222217Triosephosphate isomerase
1915141816171719135E1-E2 ATPase
71377797764Core histone H2A/H2B/H3/H4
111115Copper binding proteins, plastocyanin/azurin family
810710109101175Alpha amylase, catalytic domain
2221222316Phorbol esters/diacylglycerol binding domain (C1 domain)
7778877758Bacterial transferase hexapeptide (six repeats)
3434333326tRNA synthetases class I (I, L, M and V)
7878787658Cyclin, N-terminal domain
2834323425373121242Carboxylesterase family
4444444432DNA polymerase family B
5444454434ATP synthase subunit C
1099139710875Peroxidase
9151720721249122Beta-lactamase
4342333325C-5 cytosine-specific DNA methylase
3331282627272926227Calcineurin-like phosphoesterase
715161313121511102Cellulase (glycosyl hydrolase family 5)
7977877759tRNA synthetases class II (D, K and N)
4141404240424340329Mitochondrial carrier protein
112recA bacterial DNA recombination protein
1723222018171922158Aminotransferase class I and II
1011999891075Phosphoribosyl transferase domain
11109111011101183Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
111111118Phosphoglycerate kinase
3222222217Ribosomal protein S4/S9 N-terminal domain
2222222216Ribosomal protein S12/S23
11111117Bacterial regulatory helix-turn-helix proteins, AraC family
111111118Chaperonin 10 Kd subunit
121113141211121196C2 domain
1919192018171820150PH domain
8998111081073bZIP transcription factor
2022232124252622183Aldehyde dehydrogenase family
2041952352411822752341831,749Fungal Zn(2)-Cys(6) binuclear cluster domain
2326232423282419190Cytochrome b5-like Heme/Steroid binding domain
4443363330Oxidoreductase molybdopterin binding domain
1617181716181616134Oxidoreductase NAD-binding domain
2528283226272624216SNF2 family N-terminal domain
2222222216Ribosomal protein S7p/S5e
2722242324272625198Ubiquitin-conjugating enzyme
7788776656Isocitrate/isopropylmalate dehydrogenase
2222222216Ribosomal Proteins L2, RNA binding domain
111111118Hsp90 protein
2322222217Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111111118Dihydrofolate reductase
64674971053Chitin recognition protein
4344343328Cysteine-rich secretory protein family
111111118Ribosomal protein S3, C-terminal domain
8666597451Cupin
2222222216Annexin
1222112112Eukaryotic-type carbonic anhydrase
2114Chalcone and stilbene synthases, N-terminal domain
33333333242-oxoacid dehydrogenases acyltransferase (catalytic domain)
4626466539Catalase
111111118Disintegrin
1113UDP-glucoronosyl and UDP-glucosyl transferase
97108989767Aminotransferase class-III
2222222216Ribosomal protein S19
111111118DNA gyrase B
6677678552Thiamine pyrophosphate enzyme, central domain
4444444432Lyase
2222222216Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1112131212Sodium:neurotransmitter symporter family
111111118Adenylate and Guanylate cyclase catalytic domain
111111118ATP synthase delta (OSCP) subunit
111111118Orotidine 5'-phosphate decarboxylase / HUMPS family
111111118Indole-3-glycerol phosphate synthase
4323112218Aromatic amino acid lyase
111111118Pyruvate kinase, barrel domain
10101112111110984Kinesin motor domain
3740363836334331294DnaJ domain
1414141414141414112Proteasome subunit
1078881010566Major intrinsic protein
111111118ATP synthase
7563453336Glycosyl hydrolase family 1
1111111183'5'-cyclic nucleotide phosphodiesterase
111111118Profilin
111111118Ribosomal protein L22p/L17e
2222222216Ribosomal protein L14p/L23e
131214121311121299Ubiquitin family
6555654642Cofilin/tropomyosin-type actin-binding protein
222222221614-3-3 protein
5364465639Alkaline phosphatase
7667493446Zinc carboxypeptidase
3639413630344330289Aldo/keto reductase family
2114141810121813120Myb-like DNA-binding domain
4444444432Forkhead domain
3344332123Glycosyl hydrolases family 32 N-terminal domain
111111118Ribosomal protein L16p/L10e
3233234323Ribosomal protein S14p/S29e
5554554437FKBP-type peptidyl-prolyl cis-trans isomerase
111111118Glutathione peroxidase
111111118
7778788759Flavodoxin
11Protamine P1
111111118Calreticulin family
1717181317241313132Common central domain of tyrosinase
81088788865Aminotransferase class-V
111111118Ribonucleotide reductase, small chain
3941394039414037316DEAD/DEAH box helicase
7581778076767669610Helicase conserved C-terminal domain
111111118EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
1221222214Ribosomal protein L23
111111118Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1222222215Ribosomal protein L5
6676667650Pyridoxal-dependent decarboxylase conserved domain
3233233221Citrate synthase, C-terminal domain
5655556643GHMP kinases N terminal domain
6776777754Biotin carboxylase, N-terminal domain
111111118Tryptophan synthase alpha chain
11101112911111388Pyridoxal-phosphate dependent enzyme
1719161617191915138NUDIX domain
7766659753pfkB family carbohydrate kinase
910127859363Glycosyl hydrolases family 28
213Luciferase-like monooxygenase
2222222216Ribosomal protein L3
2122223216Ribosomal protein L11, RNA binding domain
1215121515141716116Histidine phosphatase superfamily (branch 1)
111111118Thymidylate synthase
111115Lipoxygenase
4444444432ATP synthase alpha/beta chain, C terminal domain
5555455539Calponin homology (CH) domain
5556564541Glutamine amidotransferases class-II
2222222216Ribosomal protein S15
111111118Thaumatin family
2222212215Fructose-1-6-bisphosphatase, N-terminal domain
111111118Ribonucleotide reductase, all-alpha domain
2222222216Ribosomal protein S2
2222222216SRF-type transcription factor (DNA-binding and dimerisation domain)
7776667753GATA zinc finger
4147474848445841374Amino acid permease
6556655543Prolyl oligopeptidase family
3323222219Ribosomal protein L30p/L7e
111112131212121093Histidine phosphatase superfamily (branch 2)
111111118Respiratory-chain NADH dehydrogenase, 30 Kd subunit
4654464437Aconitase family (aconitate hydratase)
5755695446Glycosyl hydrolase family 10
4223323423Glycosyl hydrolases family 17
2222222216Ribosomal protein S5, N-terminal domain
111111118Nucleoside diphosphate kinase
112Tetraspanin family
11Galactoside-binding lectin
111111118Ribosomal protein S10p/S20e
6666545745Arrestin (or S-antigen), N-terminal domain
111111118Phosphoglucose isomerase
111111118Carbohydrate phosphorylase
111111118SecY translocase
111111118Respiratory-chain NADH dehydrogenase, 49 Kd subunit
2222222216Ribosomal protein L6
6533334330Polyprenyl synthetase
5565565441Hexokinase
81086686961Dynamin family
111111129Transcription factor TFIID (or TATA-binding protein, TBP)
7666676448Rieske [2Fe-2S] domain
11Phytochrome region
8898999969Biotin-requiring enzyme
111111118Phosphofructokinase
2222222216Ribosomal protein S17
121111119Hydroxymethylglutaryl-coenzyme A reductase
3333333324FGGY family of carbohydrate kinases, N-terminal domain
111115Sodium:dicarboxylate symporter family
109141413151411100Enoyl-CoA hydratase/isomerase
2222222216Ribosomal protein S9/S16
2222222216Transcription factor TFIIB repeat
9789698864Cytidine and deoxycytidylate deaminase zinc-binding region
111111118Molybdopterin oxidoreductase
51047548649Chromo (CHRromatin Organisation MOdifier) domain
3333333324Phosphatidylinositol-specific phospholipase C, Y domain
3433333325Phosphatidylinositol-specific phospholipase C, X domain
79711101312978D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2222222216Malic enzyme, N-terminal domain
11PEP-utilising enzyme, mobile domain
22222322176-phosphogluconate dehydrogenase, C-terminal domain
1011121510141713102Multicopper oxidase
9121210101510987WW domain
111111118Ribosomal RNA adenine dimethylase
2222232217Yeast PIR protein repeat
128147105160103109111131994WD domain, G-beta repeat
6555655643Heavy-metal-associated domain
3545446334Adenylate kinase
2433322221Phosphoglucomutase/phosphomannomutase, C-terminal domain
3212222216Ribosomal protein S8
1122111312Ribosomal protein S11
4544554536LIM domain
1213333218Matrixin
1211112110Regulator of chromosome condensation (RCC1) repeat
2212222215Ribosomal protein S13/S18
3333322221chorismate binding enzyme
444445443360s Acidic ribosomal protein
5545445436Prenyltransferase and squalene oxidase repeat
6665567748Protein kinase C terminal domain
111111118Single-strand binding protein family
111111118S-adenosylmethionine synthetase, N-terminal domain
9868787962Bromodomain
1311101513181614110Acyl-CoA dehydrogenase, C-terminal domain
1514171415161415120Ubiquitin carboxyl-terminal hydrolase
111111118Ribosomal protein L36
2222222216Ribonuclease T2 family
11Gonadotropin-releasing hormone
3343333325HSF-type DNA-binding
2222222216SRP54-type protein, GTPase domain
111112119Urease alpha-subunit, N-terminal domain
101012111113131292Serine carboxypeptidase
112Apoptosis regulator proteins, Bcl-2 family
8888888864Phosphatidylinositol 3- and 4-kinase
3243354327Transketolase, thiamine diphosphate binding domain
3454595338Glycosyl hydrolases family 11
5555555439Inositol monophosphatase family
4444444432Glutaredoxin
5354354231Isocitrate lyase family
2223223218Serine hydroxymethyltransferase
4334254328Iron-containing alcohol dehydrogenase
2222122215Ribosomal protein L10
3423434528KOW motif
111111118Ribosomal protein L34
11Negative factor, (F-Protein) or Nef
2222222216RF-1 domain
3162633327Sodium:solute symporter family
112111119Imidazoleglycerol-phosphate dehydratase
111111118DNA polymerase family A
111111118IMP dehydrogenase / GMP reductase domain
111111118Glucose-6-phosphate dehydrogenase, NAD binding domain
6766676650Protein phosphatase 2C
3233334324Nucleotidyl transferase
3434464331Carbonic anhydrase
111111118Phosphoribulokinase / Uridine kinase family
7779677555Fatty acid desaturase
6666666648MutS domain V
111111118Delta-aminolevulinic acid dehydratase
4665464439Arginase family
6666666648MCM P-loop domain
2222222317Squalene/phytoene synthase
11Bacterial extracellular solute-binding proteins, family 5 Middle
888691011767FHA domain
4652495749525353411AMP-binding enzyme
5446445537G-protein alpha subunit
7889888864HMG (high mobility group) box
1816212020291615155His Kinase A (phospho-acceptor) domain
3333333324Armadillo/beta-catenin-like repeat
3131213919313535242Tetratricopeptide repeat
2334425427Ion transport protein
111111118DNA gyrase/topoisomerase IV, subunit A
121312141211131299BRCA1 C Terminus (BRCT) domain
79787107762Glycosyl transferases group 1
3553453432Glycosyl transferase family 2
3343334427SAM domain (Sterile alpha motif)
11111117linker histone H1 and H5 family
111111118Ribosomal protein L7/L12 C-terminal domain
9686533242Pectate lyase
1412111112ribonuclease
111112119Urease, gamma subunit
4444644434CoA-ligase
2424193124202334199Phosphopantetheine attachment site
3333333324Formyl transferase
11delta endotoxin
81198989971Metallopeptidase family M24
1415121514151413112Leucine Rich Repeat
5551604647705142422alpha/beta hydrolase fold
3333334325RNA polymerase Rpb2, domain 6
4434343429PB1 domain
2222222216Staphylococcal nuclease homologue
111211121211111292Rab-GTPase-TBC domain
111211119Tudor domain
111111118WH1 domain
5453353331Zinc finger, ZZ type
2234333121HRDC domain
8109108109973CBS domain
2222222216Ribosomal protein L13
2222222216Ribosomal protein L4/L1 family
111111118Clp protease
4442322324S1 RNA binding domain
111111118HIUase/Transthyretin family
6557557646AhpC/TSA family
4544445434tRNA synthetases class I (W and Y)
111112119UvrD/REP helicase N-terminal domain
5547546743Rhodanese-like domain
2222222216Universal stress protein family
5145545142535457407Acetyltransferase (GNAT) family
111111118SecE/Sec61-gamma subunits of protein translocation complex
111111118C-terminal regulatory domain of Threonine dehydratase
2222222216AIR synthase related protein, N-terminal domain
8888898865tRNA synthetase class II core domain (G, H, P, S and T)
2222222216SpoU rRNA Methylase family
2222222216Tetrapyrrole (Corrin/Porphyrin) Methylases
1122112111Glycosyl transferase family, a/b domain
111111118PDZ domain
7867768655Class II Aldolase and Adducin N-terminal domain
11Influenza non-structural protein (NS1)
4434444431Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
5555555540Fes/CIP4, and EFC/F-BAR homology domain
4443544533IQ calmodulin-binding motif
2222222216Phosphoinositide 3-kinase family, accessory domain (PIK domain)
4655455539Phospholipase D Active site motif
11111117Regulator of G protein signaling domain
3333333324GTPase-activator protein for Ras-like GTPase
4444444432RasGEF domain
4444444432RasGEF N-terminal motif
7888888863RhoGAP domain
6666667649RhoGEF domain
4332233323SPRY domain
3333333324RNA polymerase Rpb1, domain 2
1211112110Guanylate kinase
4444444533Gelsolin repeat
10810991010975UBA/TS-N domain
1720181816181917143PHD-finger
111111118GGL domain
5555555540HECT-domain (ubiquitin-transferase)
2222111213Helix-hairpin-helix motif
111111118MSP (Major sperm protein) domain
78766107657Ribonuclease III domain
2122212214Region in Clathrin and VPS
2222222216RanBP1 domain
2222222216PPIC-type PPIASE domain
2121111110Zn-finger in Ran binding protein and others
2218281620202318165Zinc finger C-x8-C-x5-C-x3-H type (and similar)
3223323220Poly(ADP-ribose) polymerase catalytic domain
2222222115Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
7810810183818413170736F-box domain
111111118Elongation factor 1 gamma, conserved domain
3334333325Calpain family cysteine protease
1222221214Copper fist DNA binding domain
6555555541CRAL/TRIO domain
2319262613233911180BTB/POZ domain
1311223114Ricin-type beta-trefoil lectin domain
111111118Inhibitor of Apoptosis domain
4434444431Voltage gated chloride channel
2325234425Caspase domain
1718201415151711127GDSL-like Lipase/Acylhydrolase
111111118Poly-adenylate binding protein, unique domain
1211112110POLO box duplicated region
2420232318212324176ABC transporter transmembrane region
6878778758FAD binding domain
7111199891579Condensation domain
111111118S-adenosyl-L-homocysteine hydrolase, NAD binding domain
111111118HAMP domain
2222222216ribosomal L5P family C-terminus
5555555540Insulinase (Peptidase family M16)
3333333324Dehydrogenase E1 component
111111118Lumazine binding domain
6676666649Elongation factor G C-terminus
4454454434HMGL-like
5544444434DnaJ central domain
3243344326Starch binding domain
3333323323Ribosomal protein L1p/L10e family
1176107109868Cation transporting ATPase, C-terminus
1087117107868Cation transporter/ATPase, N-terminus
112111119dUTPase
4554464436Aconitase C-terminal domain
4333443630Amino acid kinase family
111111118N-(5'phosphoribosyl)anthranilate (PRA) isomerase
1932183321232036202Acyl transferase domain
111112119Urease beta subunit
4687587449Dihydrodipicolinate synthetase family
3835323938373834291haloacid dehalogenase-like hydrolase
7966998862Glycosyl hydrolases family 2
1613131310121312102Glycosyl hydrolases family 18
111111118Proliferating cell nuclear antigen, N-terminal domain
111111118Acylphosphatase
111111118Adenylosuccinate synthetase
2222233319Asparaginase, N-terminal
2222212215Peptidase S24-like
111111129Inorganic pyrophosphatase
11111110108111082Glycosyl hydrolases family 16
4343244327Glycosyl hydrolases family 15
107957117662NADH:flavin oxidoreductase / NADH oxidase family
22314422203-hydroxyacyl-CoA dehydrogenase, C-terminal domain
4443444431Glycosyl hydrolase family 20, catalytic domain
4565544437HhH-GPD superfamily base excision DNA repair protein
111111118AIR carboxylase
2836293217363323234GMC oxidoreductase
5333232324Asparagine synthase
1112131071514890Fungal cellulose binding domain
6566665646Septin
111111118EF-1 guanine nucleotide exchange domain
111111118Homoserine dehydrogenase
3542542227Flavin-binding monooxygenase-like
11LPXTG cell wall anchor motif
3333333324tRNA synthetases class I (E and Q), catalytic domain
2323324221tRNA synthetases class I (R)
4444444432XPG N-terminal domain
121213149191612107Metallo-beta-lactamase superfamily