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PFAM Domains • Hexagonia nitida CIRM-BRFM 1802 v1.0
Annotations/GenomesCerun2Dicsq1Fibra1Hexnit1Polar1Polbr1Pycco1TotalAnnotation Description
PFAMs
8,0468,0727,01410,4909,1439,1627,93459,861
41444142484942307ATPase family associated with various cellular activities (AAA)
46384049484739307ABC transporter
444444428ATP synthase alpha/beta family, nucleotide-binding domain
112EGF-like domain
14141415151415101Elongation factor Tu GTP binding domain
101071411111174Helix-loop-helix DNA-binding domain
81461311101072Hsp20/alpha crystallin family
1214610119769Hsp70 protein
8148788861KH domain
111115SH2 domain
25242416242425162SH3 domain
101091010101069Actin
2817263242426148Ankyrin repeat
877777750ADP-ribosylation factor family
33443950495641312Eukaryotic aspartyl protease
333333321Cyclic nucleotide-binding domain
11111117Cytochrome c
676698749Double-stranded RNA binding motif
191916191919111EF hand
11211174Fe-4S binding domain
111216Fibronectin type III domain
111115Globin
16181810222120125Glutathione S-transferase, C-terminal domain
11111117Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
1113Hemopexin
1279141615982Homeodomain
112Laminin EGF domain
222222214lactate/malate dehydrogenase, NAD binding domain
11Lipocalin / cytosolic fatty-acid binding protein family
465656537Myosin head (motor domain)
1851721722242021941241,273Cytochrome P450
2091471372031881951621,241Protein kinase domain
14161911171716110Pyridine nucleotide-disulphide oxidoreductase
25222427242425171Ras family
1088999962Response regulator receiver domain
88325482028140RNase H
69606356717067456RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
12223Reverse transcriptase (RNA-dependent DNA polymerase)
11111117Copper/zinc superoxide dismutase (SODC)
232156221Iron/manganese superoxide dismutases, alpha-hairpin domain
5622744553Subtilase family
33313546343230241Sugar (and other) transporter
1088121014870Thioredoxin
755577541Tubulin/FtsZ family, GTPase domain
104232223von Willebrand factor type A domain
46504021626655340Zinc finger, C2H2 type
67593511677059368Zinc finger, C3HC4 type (RING finger)
16311212161721125Zinc knuckle
222322215Protein-tyrosine phosphatase
948210711212812783733short chain dehydrogenase
39644660687352402Zinc-binding dehydrogenase
544544430Thiolase, N-terminal domain
4411745237Beta-ketoacyl synthase, N-terminal domain
3231333182Fe-2S iron-sulfur cluster binding domain
11111117Enolase, C-terminal TIM barrel domain
112Cytochrome C and Quinol oxidase polypeptide I
878888855Glutamine amidotransferase class-I
1010101211101073TCP-1/cpn60 chaperonin family
434333323Glutamine synthetase, catalytic domain
11111117Triosephosphate isomerase
16141317151511101E1-E2 ATPase
18191516182016122Core histone H2A/H2B/H3/H4
1113Copper binding proteins, plastocyanin/azurin family
987888654Alpha amylase, catalytic domain
665666641Phorbol esters/diacylglycerol binding domain (C1 domain)
553434529Bacterial transferase hexapeptide (six repeats)
333434323tRNA synthetases class I (I, L, M and V)
121281210121076Cyclin, N-terminal domain
17242227404217189Carboxylesterase family
444444428DNA polymerase family B
433333322ATP synthase subunit C
2014223212012112Peroxidase
2547107439Beta-lactamase
444555431C-5 cytosine-specific DNA methylase
24252424282823176Calcineurin-like phosphoesterase
1012102111121389Cellulase (glycosyl hydrolase family 5)
776677646tRNA synthetases class II (D, K and N)
39373741374137269Mitochondrial carrier protein
14181423212020130Aminotransferase class I and II
767377744Phosphoribosyl transferase domain
1412131414151496Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
122222213Ribosomal protein S4/S9 N-terminal domain
222222214Ribosomal protein S12/S23
11111117Chaperonin 10 Kd subunit
16121413191313100C2 domain
2222179232522140PH domain
753866439bZIP transcription factor
17192016231819132Aldehyde dehydrogenase family
65773072929469499Fungal Zn(2)-Cys(6) binuclear cluster domain
22232523242523165Cytochrome b5-like Heme/Steroid binding domain
233444424Oxidoreductase molybdopterin binding domain
1012111112121381Oxidoreductase NAD-binding domain
21212224202023151SNF2 family N-terminal domain
222222214Ribosomal protein S7p/S5e
21202022212122147Ubiquitin-conjugating enzyme
555555535Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
222222214Hsp90 protein
222222214Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111116Dihydrofolate reductase
1113Chitin recognition protein
422255222Cysteine-rich secretory protein family
1111116Ribosomal protein S3, C-terminal domain
875777647Cupin
11Eukaryotic-type carbonic anhydrase
3333333212-oxoacid dehydrogenases acyltransferase (catalytic domain)
334358329Catalase
1111116Disintegrin
6615881953UDP-glucoronosyl and UDP-glucosyl transferase
755555537Aminotransferase class-III
222222214Ribosomal protein S19
12111118DNA gyrase B
442455428Thiamine pyrophosphate enzyme, central domain
333333321Lyase
21111118Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11111117Adenylate and Guanylate cyclase catalytic domain
11112118ATP synthase delta (OSCP) subunit
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
121122110Indole-3-glycerol phosphate synthase
13111119Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
998989961Kinesin motor domain
34282731323330215DnaJ domain
1514131414141498Proteasome subunit
453555431Major intrinsic protein
11111117ATP synthase
542222219Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
11111117Profilin
211211210Ribosomal protein L22p/L17e
222222214Ribosomal protein L14p/L23e
16171617191717119Ubiquitin family
554555534Cofilin/tropomyosin-type actin-binding protein
21222321414-3-3 protein
32122212Alkaline phosphatase
11111117Zinc carboxypeptidase
51614449605856379Aldo/keto reductase family
101312614141281Myb-like DNA-binding domain
554555534Forkhead domain
1231119Glycosyl hydrolases family 32 N-terminal domain
11121118Ribosomal protein L16p/L10e
212222213Ribosomal protein S14p/S29e
533333323FKBP-type peptidyl-prolyl cis-trans isomerase
11111117Glutathione peroxidase
2121118
7678108652Flavodoxin
11Protamine P1
112Tropomyosin
11111117Calreticulin family
331533220Common central domain of tyrosinase
676799751Aminotransferase class-V
3225118233Ribonucleotide reductase, small chain
54524367515248367DEAD/DEAH box helicase
87897689848786598Helicase conserved C-terminal domain
11111117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222214Ribosomal protein L23
11111117Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11111117Ribosomal protein L5
345433527Pyridoxal-dependent decarboxylase conserved domain
334433323Citrate synthase, C-terminal domain
554555635GHMP kinases N terminal domain
766778748Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
8998910962Pyridoxal-phosphate dependent enzyme
11'Paired box' domain
16151516151515107NUDIX domain
433333322pfkB family carbohydrate kinase
978111111764Glycosyl hydrolases family 28
222222214Ribosomal protein L3
222222214Ribosomal protein L11, RNA binding domain
1076899857Histidine phosphatase superfamily (branch 1)
111232111Thymidylate synthase
112Lipoxygenase
444444428ATP synthase alpha/beta chain, C terminal domain
445444429Calponin homology (CH) domain
554355532Glutamine amidotransferases class-II
222222214Ribosomal protein S15
342955634Thaumatin family
11211118Fructose-1-6-bisphosphatase, N-terminal domain
1111105120Ribonucleotide reductase, all-alpha domain
231222214Ribosomal protein S2
221222213SRF-type transcription factor (DNA-binding and dimerisation domain)
81071011101066GATA zinc finger
2324189262520145Amino acid permease
946755440Prolyl oligopeptidase family
221222112Ribosomal protein L30p/L7e
1314131213131492Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
444455430Aconitase family (aconitate hydratase)
553566636Glycosyl hydrolase family 10
1111116Glycosyl hydrolases family 17
222222214Ribosomal protein S5, N-terminal domain
221222213Nucleoside diphosphate kinase
12241111Tetraspanin family
222222214Ribosomal protein S10p/S20e
173677536Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
11111117SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222214Ribosomal protein L6
386444433Polyprenyl synthetase
222222214Hexokinase
7651288955Dynamin family
11111218Transcription factor TFIID (or TATA-binding protein, TBP)
433244323Rieske [2Fe-2S] domain
112Phytochrome region
213Proton-conducting membrane transporter
888999960Biotin-requiring enzyme
11111117Phosphofructokinase
232222215Ribosomal protein S17
11111117Hydroxymethylglutaryl-coenzyme A reductase
334344425FGGY family of carbohydrate kinases, N-terminal domain
8878108857Enoyl-CoA hydratase/isomerase
222222214Ribosomal protein S9/S16
442233220Transcription factor TFIIB repeat
565899850Cytidine and deoxycytidylate deaminase zinc-binding region
11111117Molybdopterin oxidoreductase
81114717111280Chromo (CHRromatin Organisation MOdifier) domain
11121118Phosphatidylinositol-specific phospholipase C, Y domain
211321111Phosphatidylinositol-specific phospholipase C, X domain
679677648D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
234333321Malic enzyme, N-terminal domain
2222322156-phosphogluconate dehydrogenase, C-terminal domain
14134121111772Multicopper oxidase
10797109961WW domain
222334319Ribosomal RNA adenine dimethylase
1241921291591641631471,078WD domain, G-beta repeat
544544531Heavy-metal-associated domain
333333321Adenylate kinase
212322214Phosphoglucomutase/phosphomannomutase, C-terminal domain
11121118Ribosomal protein S8
211211210Ribosomal protein S11
665666641LIM domain
22Matrixin
421644425Regulator of chromosome condensation (RCC1) repeat
211222212Ribosomal protein S13/S18
232222215chorismate binding enzyme
33232231860s Acidic ribosomal protein
11ATP synthase B/B' CF(0)
444454429Prenyltransferase and squalene oxidase repeat
666666743Protein kinase C terminal domain
11111117Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
118101011101070Bromodomain
81010910101067Acyl-CoA dehydrogenase, C-terminal domain
15141516141416104Ubiquitin carboxyl-terminal hydrolase
1111116Ribosomal protein L36
322222215Ribonuclease T2 family
553555533HSF-type DNA-binding
222222214SRP54-type protein, GTPase domain
12121119Urease alpha-subunit, N-terminal domain
14181627212119136Serine carboxypeptidase
888899858Phosphatidylinositol 3- and 4-kinase
222222214Transketolase, thiamine diphosphate binding domain
112WHEP-TRS domain
232222215Inositol monophosphatase family
444444428Glutaredoxin
344244425Isocitrate lyase family
11112118Serine hydroxymethyltransferase
536533328Iron-containing alcohol dehydrogenase
221222213Ribosomal protein L10
545444531KOW motif
1111116Ribosomal protein L34
11Negative factor, (F-Protein) or Nef
11Ribosomal protein L33
332322318RF-1 domain
224322217Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
12111118IMP dehydrogenase / GMP reductase domain
11111117Glucose-6-phosphate dehydrogenase, NAD binding domain
676101110959Protein phosphatase 2C
432333321Nucleotidyl transferase
363354226Carbonic anhydrase
11111117Phosphoribulokinase / Uridine kinase family
169111010111077Fatty acid desaturase
656666641MutS domain V
11111117Delta-aminolevulinic acid dehydratase
455755536Arginase family
666666642MCM P-loop domain
114211111Squalene/phytoene synthase
141281213151286FHA domain
32343438373637248AMP-binding enzyme
14151315181714106G-protein alpha subunit
14161316201917115HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
655566639His Kinase A (phospho-acceptor) domain
333433322Armadillo/beta-catenin-like repeat
31262318282830184Tetratricopeptide repeat
322433320Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
11810512121371BRCA1 C Terminus (BRCT) domain
676466641Glycosyl transferases group 1
534366431Glycosyl transferase family 2
111115SAM domain (Sterile alpha motif)
322333319linker histone H1 and H5 family
11111117Ribosomal protein L7/L12 C-terminal domain
11Pectate lyase
1321119ribonuclease
12121119Urease, gamma subunit
333333321CoA-ligase
597161091066Phosphopantetheine attachment site
222222214Formyl transferase
910101211121175Metallopeptidase family M24
151618316141597Leucine Rich Repeat
43433614514948284alpha/beta hydrolase fold
333333321RNA polymerase Rpb2, domain 6
554565535PB1 domain
222342217Staphylococcal nuclease homologue
10991210101070Rab-GTPase-TBC domain
11111117Tudor domain
221222213WH1 domain
343468331Zinc finger, ZZ type
11111117HRDC domain
9108699960CBS domain
222222214Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
11111117Clp protease
333433322S1 RNA binding domain
11111117HIUase/Transthyretin family
544545431AhpC/TSA family
444444428tRNA synthetases class I (W and Y)
111322111UvrD/REP helicase N-terminal domain
443844431Rhodanese-like domain
221222213Universal stress protein family
30302817434433225Acetyltransferase (GNAT) family
11111117SecE/Sec61-gamma subunits of protein translocation complex
1111116C-terminal regulatory domain of Threonine dehydratase
222222214AIR synthase related protein, N-terminal domain
666566641tRNA synthetase class II core domain (G, H, P, S and T)
11Phage integrase family
422222216Tetrapyrrole (Corrin/Porphyrin) Methylases
11111128Glycosyl transferase family, a/b domain
1221118Class II Aldolase and Adducin N-terminal domain
333533323Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
444555532Fes/CIP4, and EFC/F-BAR homology domain
543233323IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
335133321Phospholipase D Active site motif
11131119Regulator of G protein signaling domain
445444429GTPase-activator protein for Ras-like GTPase
875655541RasGEF domain
976566645RasGEF N-terminal motif
1212121313131388RhoGAP domain
1313121513131392RhoGEF domain
423444425SPRY domain
433333322RNA polymerase Rpb1, domain 2
11111117Guanylate kinase
442445326Gelsolin repeat
879587953UBA/TS-N domain
17171517202119126PHD-finger
1121128GGL domain
544444429HECT-domain (ubiquitin-transferase)
22111119Helix-hairpin-helix motif
11211118MSP (Major sperm protein) domain
978377647Ribonuclease III domain
222622218Region in Clathrin and VPS
423344424RanBP1 domain
232134217PPIC-type PPIASE domain
351445426Zn-finger in Ran binding protein and others
23221912252726154Zinc finger C-x8-C-x5-C-x3-H type (and similar)
11111117B-box zinc finger
926433330Poly(ADP-ribose) polymerase catalytic domain
222233216Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
1311007224240254112933F-box domain
11111117Elongation factor 1 gamma, conserved domain
1111116Calpain family cysteine protease
311222213Copper fist DNA binding domain
766666744CRAL/TRIO domain
31302172465619275BTB/POZ domain
78397337Ricin-type beta-trefoil lectin domain
11111117Inhibitor of Apoptosis domain
333433322Voltage gated chloride channel
11101471011669Caspase domain
1710515912876GDSL-like Lipase/Acylhydrolase
21111118Poly-adenylate binding protein, unique domain
11111117POLO box duplicated region
24182025242418153ABC transporter transmembrane region
257Integrase core domain
656755539FAD binding domain
222211212Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11111117HAMP domain
222222214ribosomal L5P family C-terminus
664666741Insulinase (Peptidase family M16)
444444529Dehydrogenase E1 component
11111117Lumazine binding domain
666666743Elongation factor G C-terminus
444878540HMGL-like
443444427DnaJ central domain
421322216Starch binding domain
222222214Ribosomal protein L1p/L10e family
576877444Cation transporting ATPase, C-terminus
878789552Cation transporter/ATPase, N-terminus
11111117dUTPase
444455430Aconitase C-terminal domain
333333321Amino acid kinase family
11111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
4411768242Acyl transferase domain
12121119Urease beta subunit
422333320Dihydrodipicolinate synthetase family
28342814373527203haloacid dehalogenase-like hydrolase
122322113Glycosyl hydrolases family 2
101471514141185Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
11Translation initiation factor IF-3, C-terminal domain
11111117Acylphosphatase
11111128Adenylosuccinate synthetase
11111117Asparaginase, N-terminal
322222215Peptidase S24-like
11111117Inorganic pyrophosphatase
46313810650Glycosyl hydrolases family 16
322222215Glycosyl hydrolases family 15
16131216232311114NADH:flavin oxidoreductase / NADH oxidase family
111111173-hydroxyacyl-CoA dehydrogenase, C-terminal domain
442655531Glycosyl hydrolase family 20, catalytic domain
554555534HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
24372232333423205GMC oxidoreductase
222222214Asparagine synthase
2017122212021122Fungal cellulose binding domain
676666643Septin
111115EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
444554228Flavin-binding monooxygenase-like
112LPXTG cell wall anchor motif
323333320tRNA synthetases class I (E and Q), catalytic domain
11112219tRNA synthetases class I (R)
555777844XPG N-terminal domain
1112111318191599Metallo-beta-lactamase superfamily
1111116F5/8 type C domain
444444428Choline/Carnitine o-acyltransferase
11111117Putative esterase
111115Glycosyl hydrolase family 9
11111117Ferrochelatase
222222214Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
11111117Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
333333321RNB domain
322455324Dioxygenase
444845433CNH domain
223222215Diacylglycerol kinase catalytic domain
1211111713131390Dual specificity phosphatase, catalytic domain
11111117MyTH4 domain
532233321P21-Rho-binding domain
1314131514151498PX domain
343333322Ras association (RalGDS/AF-6) domain
444444428UBX domain
555555535VHS domain
11111117Phosphoinositide 3-kinase C2
222222214DAHP synthetase I family
543443427Carbon-nitrogen hydrolase
11N-acetyltransferase
11111117Prephenate dehydratase
554455634Syntaxin
555555535Pumilio-family RNA binding repeat
656788747Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
11111117ER lumen protein retaining receptor
222632219Glycoprotease family
11111117Histidinol dehydrogenase
333333321impB/mucB/samB family
1111116
11111117Ribosomal L15
1131118Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
1111116Ribosomal prokaryotic L21 protein
1111116Ribosomal L28 family
11111117Ribosomal L29 protein
11111117Ribosomal L39 protein
1111116Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
44433321Glycosyl hydrolase family 7
212122212RNA pseudouridylate synthase
686888852Histone deacetylase domain
221222112POT family
222222214PWWP domain
17161330242317140SET domain
753686540Isochorismatase family
221344319Permease family
11111117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
9658811956XPG I-region
11111117Acetokinase family
11111117DNA photolyase
11111117Cation-independent mannose-6-phosphate receptor repeat
11226Nitroreductase family
111411110Cytosol aminopeptidase family, catalytic domain
1113Sulfatase
111111176,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
322333319Acyl CoA binding protein
555586539Cullin family
11111117Elongation factor TS
354555431FAD binding domain