PFAM Domains • Porodaedalea niemelaei PN71-100-IP13 v1.0
Annotations/GenomesAurde3_1Fomme1Glotr1_1Onnsc1Pornie1_2Stehi1TotalAnnotation Description
PFAMs
11,3057,6007,9067,20810,5529,00553,576
117 transmembrane receptor (rhodopsin family)
594150424549286ATPase family associated with various cellular activities (AAA)
643735445348281ABC transporter
444155436ATP synthase alpha/beta family, nucleotide-binding domain
112EGF-like domain
17141414141588Elongation factor Tu GTP binding domain
13121111111371Helix-loop-helix DNA-binding domain
13714613558Hsp20/alpha crystallin family
159913111067Hsp70 protein
88886846KH domain
112Ribulose bisphosphate carboxylase large chain, catalytic domain
211116SH2 domain
322825281829160SH3 domain
13121220151284Actin
31202923934146Ankyrin repeat
107777745ADP-ribosylation factor family
333531464436225Eukaryotic aspartyl protease
33333419Cyclic nucleotide-binding domain
22Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
1111116Cytochrome c
168711111164Double-stranded RNA binding motif
1815181731788EF hand
1111154Fe-4S binding domain
1111116Fibronectin type III domain
112Globin
161918791685Glutathione S-transferase, C-terminal domain
1112117Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
112Hemopexin
13910911961Homeodomain
22223213lactate/malate dehydrogenase, NAD binding domain
75644733Myosin head (motor domain)
225120119116133204917Cytochrome P450
3882441481482951571,380Protein kinase domain
251718171022109Pyridine nucleotide-disulphide oxidoreductase
332426242825160Ras family
15999111467Response regulator receiver domain
45114461383RNase H
745968615965386RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
617Reverse transcriptase (RNA-dependent DNA polymerase)
1111127Copper/zinc superoxide dismutase (SODC)
32223214Iron/manganese superoxide dismutases, alpha-hairpin domain
5053811279Subtilase family
333242254839219Sugar (and other) transporter
131291091164Thioredoxin
75557534Tubulin/FtsZ family, GTPase domain
7322519von Willebrand factor type A domain
1215448642055362Zinc finger, C2H2 type
694851521156287Zinc finger, C3HC4 type (RING finger)
62143014727154Zinc knuckle
32222213Protein-tyrosine phosphatase
16595945978136627short chain dehydrogenase
525158316378333Zinc-binding dehydrogenase
45465529Thiolase, N-terminal domain
261374840Beta-ketoacyl synthase, N-terminal domain
333313162Fe-2S iron-sulfur cluster binding domain
1211117Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
787812749Glutamine amidotransferase class-I
12131111141071TCP-1/cpn60 chaperonin family
112ATP synthase A chain
33333419Glutamine synthetase, catalytic domain
1111116Triosephosphate isomerase
17121111151177E1-E2 ATPase
231614171616102Core histone H2A/H2B/H3/H4
211318Copper binding proteins, plastocyanin/azurin family
8587101351Alpha amylase, catalytic domain
65655633Phorbol esters/diacylglycerol binding domain (C1 domain)
42443421Bacterial transferase hexapeptide (six repeats)
33335320tRNA synthetases class I (I, L, M and V)
118141091062Cyclin, N-terminal domain
132217122232118Carboxylesterase family
63433423DNA polymerase family B
42343319ATP synthase subunit C
23181622777Peroxidase
2215171147Beta-lactamase
55444628C-5 cytosine-specific DNA methylase
22NADH dehydrogenase
353024232828168Calcineurin-like phosphoesterase
16151113231593Cellulase (glycosyl hydrolase family 5)
65755634tRNA synthetases class II (D, K and N)
403437364037224Mitochondrial carrier protein
14141811162093Aminotransferase class I and II
65654531Phosphoribosyl transferase domain
20121312141384Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111116Phosphoglycerate kinase
22222212Ribosomal protein S4/S9 N-terminal domain
23222213Ribosomal protein S12/S23
1111127Chaperonin 10 Kd subunit
152914172417116C2 domain
17181721820101PH domain
766610742bZIP transcription factor
14161315182298Aldehyde dehydrogenase family
1048255738785486Fungal Zn(2)-Cys(6) binuclear cluster domain
272128232725151Cytochrome b5-like Heme/Steroid binding domain
4251517Oxidoreductase molybdopterin binding domain
1861077856Oxidoreductase NAD-binding domain
282025222427146SNF2 family N-terminal domain
22222212Ribosomal protein S7p/S5e
242122212221131Ubiquitin-conjugating enzyme
56667535Isocitrate/isopropylmalate dehydrogenase
22222212Ribosomal Proteins L2, RNA binding domain
23224215Hsp90 protein
23224215Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111116Dihydrofolate reductase
11Chitin recognition protein
71222317Cysteine-rich secretory protein family
1111116Ribosomal protein S3, C-terminal domain
7242116Cupin
66Eukaryotic-type carbonic anhydrase
333452202-oxoacid dehydrogenases acyltransferase (catalytic domain)
52422318Catalase
1111116Disintegrin
719118UDP-glucoronosyl and UDP-glucosyl transferase
55655632Aminotransferase class-III
22222212Ribosomal protein S19
1111116DNA gyrase B
43423218Thiamine pyrophosphate enzyme, central domain
33333318Lyase
11222210Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1311129Adenylate and Guanylate cyclase catalytic domain
1111116ATP synthase delta (OSCP) subunit
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
1222119Indole-3-glycerol phosphate synthase
41112312Aromatic amino acid lyase
1111116Pyruvate kinase, barrel domain
121010911860Kinesin motor domain
332730293634189DnaJ domain
17141414161489Proteasome subunit
42622521Major intrinsic protein
3111118ATP synthase
15525321Glycosyl hydrolase family 1
11111163'5'-cyclic nucleotide phosphodiesterase
1111116Profilin
12122210Ribosomal protein L22p/L17e
22221211Ribosomal protein L14p/L23e
181614162115100Ubiquitin family
55568635Cofilin/tropomyosin-type actin-binding protein
5212221414-3-3 protein
4121210Alkaline phosphatase
111126Zinc carboxypeptidase
565662255064313Aldo/keto reductase family
1111131371166Myb-like DNA-binding domain
95566536Forkhead domain
2114Glycosyl hydrolases family 32 N-terminal domain
1114119Ribosomal protein L16p/L10e
21222110Ribosomal protein S14p/S29e
43333420FKBP-type peptidyl-prolyl cis-trans isomerase
111115Glutathione peroxidase
2222210
157776547Flavodoxin
11Protamine P1
112Tropomyosin
1111116Calreticulin family
10125725Common central domain of tyrosinase
867710846Aminotransferase class-V
81211518Ribonucleotide reductase, small chain
574150445154297DEAD/DEAH box helicase
1126986758091513Helicase conserved C-terminal domain
121217Fructose-bisphosphate aldolase class-I
1111127EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22222212Ribosomal protein L23
1111116Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1111116Ribosomal protein L5
44564528Pyridoxal-dependent decarboxylase conserved domain
53325321Citrate synthase, C-terminal domain
55565531GHMP kinases N terminal domain
76679641Biotin carboxylase, N-terminal domain
1111116Tryptophan synthase alpha chain
1089791053Pyridoxal-phosphate dependent enzyme
18151514171695NUDIX domain
44544526pfkB family carbohydrate kinase
1014101121764Glycosyl hydrolases family 28
22222212Ribosomal protein L3
21232212Ribosomal protein L11, RNA binding domain
12771191056Histidine phosphatase superfamily (branch 1)
1111116Thymidylate synthase
444125433ATP synthase alpha/beta chain, C terminal domain
64446428Calponin homology (CH) domain
55553629Glutamine amidotransferases class-II
22222212Ribosomal protein S15
148838950Thaumatin family
2111117Fructose-1-6-bisphosphatase, N-terminal domain
2111128Ribonucleotide reductase, all-alpha domain
23229119Ribosomal protein S2
31333316SRF-type transcription factor (DNA-binding and dimerisation domain)
9910991258GATA zinc finger
292125201230137Amino acid permease
76668942Prolyl oligopeptidase family
1111217Ribosomal protein L30p/L7e
910128141467Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
57445429Aconitase family (aconitate hydratase)
44345626Glycosyl hydrolase family 10
1111116Glycosyl hydrolases family 17
22222212Ribosomal protein S5, N-terminal domain
22222212Nucleoside diphosphate kinase
1312411Tetraspanin family
12222211Ribosomal protein S10p/S20e
53254423Arrestin (or S-antigen), N-terminal domain
1111116Phosphoglucose isomerase
1111116Carbohydrate phosphorylase
1111419SecY translocase
1111116Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222212Ribosomal protein L6
43533826Polyprenyl synthetase
22222212Hexokinase
576712744Dynamin family
51111211Transcription factor TFIID (or TATA-binding protein, TBP)
45557531Rieske [2Fe-2S] domain
11Phytochrome region
33Proton-conducting membrane transporter
988910751Biotin-requiring enzyme
2111117Phosphofructokinase
32222213Ribosomal protein S17
1111116Hydroxymethylglutaryl-coenzyme A reductase
34343320FGGY family of carbohydrate kinases, N-terminal domain
10128911858Enoyl-CoA hydratase/isomerase
22222212Ribosomal protein S9/S16
34222215Transcription factor TFIIB repeat
75687740Cytidine and deoxycytidylate deaminase zinc-binding region
1211117Molybdopterin oxidoreductase
2011758960Chromo (CHRromatin Organisation MOdifier) domain
21222211Phosphatidylinositol-specific phospholipase C, Y domain
21243214Phosphatidylinositol-specific phospholipase C, X domain
116676945D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
22222313Malic enzyme, N-terminal domain
11211286-phosphogluconate dehydrogenase, C-terminal domain
9115872161Multicopper oxidase
79910101156WW domain
22322213Ribosomal RNA adenine dimethylase
254190123131134151983WD domain, G-beta repeat
43333420Heavy-metal-associated domain
33333318Adenylate kinase
22123111Phosphoglucomutase/phosphomannomutase, C-terminal domain
2111218Ribosomal protein S8
21222110Ribosomal protein S11
57655634LIM domain
523311428Regulator of chromosome condensation (RCC1) repeat
22222111Ribosomal protein S13/S18
11
22222212chorismate binding enzyme
4333331960s Acidic ribosomal protein
65444427Prenyltransferase and squalene oxidase repeat
77676841Protein kinase C terminal domain
1111116Single-strand binding protein family
1111116S-adenosylmethionine synthetase, N-terminal domain
13121010111066Bromodomain
1181088954Acyl-CoA dehydrogenase, C-terminal domain
18141414171491Ubiquitin carboxyl-terminal hydrolase
1111116Ribosomal protein L36
24323317Ribonuclease T2 family
64544427HSF-type DNA-binding
32222213SRP54-type protein, GTPase domain
1111116Urease alpha-subunit, N-terminal domain
301416141614104Serine carboxypeptidase
118888851Phosphatidylinositol 3- and 4-kinase
1121139Transketolase, thiamine diphosphate binding domain
314Glycosyl hydrolases family 11
1113WHEP-TRS domain
23222213Inositol monophosphatase family
64444426Glutaredoxin
33432419Isocitrate lyase family
1111116Serine hydroxymethyltransferase
23434521Iron-containing alcohol dehydrogenase
21212210Ribosomal protein L10
65565532KOW motif
1111116Ribosomal protein L34
11Ribosomal protein L33
22234316RF-1 domain
32422417Sodium:solute symporter family
1111116Imidazoleglycerol-phosphate dehydratase
1121117DNA polymerase family A
11143111IMP dehydrogenase / GMP reductase domain
1111116Glucose-6-phosphate dehydrogenase, NAD binding domain
1186881051Protein phosphatase 2C
34333420Nucleotidyl transferase
22332416Carbonic anhydrase
1111116Phosphoribulokinase / Uridine kinase family
9813661557Fatty acid desaturase
66667637MutS domain V
1111116Delta-aminolevulinic acid dehydratase
33543523Arginase family
76677639MCM P-loop domain
21114211Squalene/phytoene synthase
8991091055FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
322633293241193AMP-binding enzyme
8121412121573G-protein alpha subunit
132414173222122HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
112Cytochrome c oxidase subunit III
956661042His Kinase A (phospho-acceptor) domain
32423317Armadillo/beta-catenin-like repeat
396329231433201Tetratricopeptide repeat
33343319Ion transport protein
1111116DNA gyrase/topoisomerase IV, subunit A
9913881057BRCA1 C Terminus (BRCT) domain
75785638Glycosyl transferases group 1
43333420Glycosyl transferase family 2
11114SAM domain (Sterile alpha motif)
24445423linker histone H1 and H5 family
111115Ribosomal protein L7/L12 C-terminal domain
1146Pectate lyase
1111127ribonuclease
1111116Urease, gamma subunit
33333318CoA-ligase
58141010956Phosphopantetheine attachment site
22222212Formyl transferase
1010109121364Metallopeptidase family M24
1215201531782Leucine Rich Repeat
774933331150253alpha/beta hydrolase fold
33333318RNA polymerase Rpb2, domain 6
636510434PB1 domain
22223213Staphylococcal nuclease homologue
10999111058Rab-GTPase-TBC domain
1111116Tudor domain
1131129WH1 domain
63543324Zinc finger, ZZ type
1111116HRDC domain
981087850CBS domain
22222212Ribosomal protein L13
222133224Ribosomal protein L4/L1 family
1111116Clp protease
34533422S1 RNA binding domain
21115HIUase/Transthyretin family
44454526AhpC/TSA family
44444424tRNA synthetases class I (W and Y)
1113UvrD/REP helicase N-terminal domain
43439528Rhodanese-like domain
32222213Universal stress protein family
522834261539194Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
1111116C-terminal regulatory domain of Threonine dehydratase
22222313AIR synthase related protein, N-terminal domain
866633665tRNA synthetase class II core domain (G, H, P, S and T)
112Phage integrase family
25222215Tetrapyrrole (Corrin/Porphyrin) Methylases
1111217Glycosyl transferase family, a/b domain
342313429Class II Aldolase and Adducin N-terminal domain
33344219Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
45555529Fes/CIP4, and EFC/F-BAR homology domain
33353421IQ calmodulin-binding motif
22222212Phosphoinositide 3-kinase family, accessory domain (PIK domain)
43431318Phospholipase D Active site motif
1111318Regulator of G protein signaling domain
54444526GTPase-activator protein for Ras-like GTPase
969910851RasGEF domain
127977951RasGEF N-terminal motif
16141313131483RhoGAP domain
15121414171284RhoGEF domain
44435424SPRY domain
333311326RNA polymerase Rpb1, domain 2
2111117Guanylate kinase
42433521Gelsolin repeat
981078850UBA/TS-N domain
201516191719106PHD-finger
212229GGL domain
55556531HECT-domain (ubiquitin-transferase)
32121110Helix-hairpin-helix motif
1111116MSP (Major sperm protein) domain
74663733Ribonuclease III domain
22224214Region in Clathrin and VPS
31333215RanBP1 domain
22221312PPIC-type PPIASE domain
43313418Zn-finger in Ran binding protein and others
312023221325134Zinc finger C-x8-C-x5-C-x3-H type (and similar)
11114B-box zinc finger
413411124Poly(ADP-ribose) polymerase catalytic domain
21132110Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
930849095231351,357F-box domain
1111116Elongation factor 1 gamma, conserved domain
22332618Calpain family cysteine protease
11222210Copper fist DNA binding domain
66568637CRAL/TRIO domain
161318115243153BTB/POZ domain
73221419Ricin-type beta-trefoil lectin domain
1111217Inhibitor of Apoptosis domain
23333317Voltage gated chloride channel
10767123981Caspase domain
3086491067GDSL-like Lipase/Acylhydrolase
1111116Poly-adenylate binding protein, unique domain
1111116POLO box duplicated region
331916202628142ABC transporter transmembrane region
36312Integrase core domain
114444431FAD binding domain
31211210Condensation domain
1111116S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1111138HAMP domain
22222111ribosomal L5P family C-terminus
423586551Insulinase (Peptidase family M16)
44454425Dehydrogenase E1 component
1111116Lumazine binding domain
76666738Elongation factor G C-terminus
44445526HMGL-like
33444422DnaJ central domain
32233518Starch binding domain
32223113Ribosomal protein L1p/L10e family
96453431Cation transporting ATPase, C-terminus
107664639Cation transporter/ATPase, N-terminus
1111116dUTPase
57455430Aconitase C-terminal domain
33333318Amino acid kinase family
1121117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
25975634Acyl transferase domain
1111116Urease beta subunit
33222214Dihydrodipicolinate synthetase family
372629231030155haloacid dehalogenase-like hydrolase
71212215Glycosyl hydrolases family 2
2912910121385Glycosyl hydrolases family 18
1111116Proliferating cell nuclear antigen, N-terminal domain
11Translation initiation factor IF-3, C-terminal domain
112Acylphosphatase
111115Adenylosuccinate synthetase
1111116Asparaginase, N-terminal
23323316Peptidase S24-like
2111117Inorganic pyrophosphatase
955413642Glycosyl hydrolases family 16
21233314Glycosyl hydrolases family 15
1782084123117NADH:flavin oxidoreductase / NADH oxidase family
11111163-hydroxyacyl-CoA dehydrogenase, C-terminal domain
56425426Glycosyl hydrolase family 20, catalytic domain
54645630HhH-GPD superfamily base excision DNA repair protein
1111217AIR carboxylase
423222101052168GMC oxidoreductase
22222313Asparagine synthase
42618131787Fungal cellulose binding domain
66666636Septin
1111116EF-1 guanine nucleotide exchange domain
1111217Homoserine dehydrogenase
52456527Flavin-binding monooxygenase-like
43334421tRNA synthetases class I (E and Q), catalytic domain
3121119tRNA synthetases class I (R)
176867751XPG N-terminal domain
161214881371Metallo-beta-lactamase superfamily
2114F5/8 type C domain
54444526Choline/Carnitine o-acyltransferase
1111116Putative esterase
111115Glycosyl hydrolase family 9
1111116Ferrochelatase
22222212Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1111116Arginosuccinate synthase
1111116Electron transfer flavoprotein FAD-binding domain
33334319RNB domain
575451036Dioxygenase
53345424CNH domain
22222111Diacylglycerol kinase catalytic domain
11221414181089Dual specificity phosphatase, catalytic domain
1111116MyTH4 domain
63352221P21-Rho-binding domain
15131415141586PX domain
53434322Ras association (RalGDS/AF-6) domain
44344423UBX domain
44556529VHS domain
1111116Phosphoinositide 3-kinase C2
22222212DAHP synthetase I family
94544632Carbon-nitrogen hydrolase
21227N-acetyltransferase
1111116Prephenate dehydratase
63534627Syntaxin
55555631Pumilio-family RNA binding repeat
76677639Histone-like transcription factor (CBF/NF-Y) and archaeal histone
1121117Pterin binding enzyme
1121139ER lumen protein retaining receptor
22222212Glycoprotease family
1111116Histidinol dehydrogenase
34344422impB/mucB/samB family
111115
1111116Ribosomal L15
1111419Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
1111116Ribosomal prokaryotic L21 protein
2111117Ribosomal L28 family
1111116Ribosomal L29 protein
211116Ribosomal L39 protein
1111116Ribosomal S17
1111116Ribulose-phosphate 3 epimerase family
1111116Translationally controlled tumour protein
6219321Glycosyl hydrolase family 7
44Ring hydroxylating alpha subunit (catalytic domain)
22222212RNA pseudouridylate synthase
108877747Histone deacetylase domain
64323220POT family
32112211PWWP domain
251214172120109SET domain
75535530Isochorismatase family
22212211Permease family
1111116Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
175967852XPG I-region
211116Acetokinase family
22113312DNA photolyase
1111116Cation-independent mannose-6-phosphate receptor repeat
1111116Cytosol aminopeptidase family, catalytic domain
11125Sulfatase
11111166,7-dimethyl-8-ribityllumazine synthase
111115Ribosomal protein S16
32333317Acyl CoA binding protein
45565530Cullin family
1211218Elongation factor TS
55856938FAD binding domain
191216762181O-methyltransferase domain
32738528EamA-like transporter family
2222210
1278710852ThiF family
1111116Ribosomal family S4e
2111128Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
11Hepatitis core antigen
42243217Ammonium Transporter Family
43433320Sulfate permease family
1111116MATH domain
33334218Dehydratase family
21422314Transaldolase/Fructose-6-phosphate aldolase
13313314Mechanosensitive ion channel
1111217GTP cyclohydrolase II
11111273,4-dihydroxy-2-butanone 4-phosphate synthase
34434422Adaptor complexes medium subunit family
1078871151Exonuclease
1111116Dipeptidyl peptidase IV (DPP IV) N-terminal region
22NB-ARC domain
148101081767Glycosyl hydrolase family 3 N terminal domain
11PE family
1111217Ribosomal protein L44
11Sodium:sulfate symporter transmembrane region
1111116DNA-dependent RNA polymerase
11Peptidase S7, Flavivirus NS3 serine protease
1111116Glycosyl transferase family 4
1111116HCO3- transporter family
34334320Nucleosome assembly protein (NAP)
44453424Synaptobrevin
1111116GMP synthase C terminal domain
718LAGLIDADG endonuclease
33533421Adenosine/AMP deaminase
72633526Oxidoreductase FAD-binding domain
11324718Thioesterase domain
21222211Histidine biosynthesis protein
33333318Glycosyltransferase family 20
1111116UDP-glucose/GDP-mannose dehydrogenase family, central domain
22224214Carbamoyl-phosphate synthase small chain, CPSase domain
213PAS fold
21212210Probable molybdopterin binding domain
44444424Sec1 family
22223213GDP dissociation inhibitor
78858743Sodium/hydrogen exchanger family
22222212RNA polymerase Rpb3/RpoA insert domain
53444424Initiation factor 2 subunit family
2114PQQ enzyme repeat
22222212Electron transfer flavoprotein domain
1111116Uricase
1111116Ribosomal S3Ae family
112116Ribosomal L27 protein
1111217GTP1/OBG
22343317Gamma-glutamyltranspeptidase
11Ribosomal L40e family
111115GrpE
33323317TatD related DNase
11