Due to a planned NERSC facility-wide outage, JGI portals will be down 7am PT February 21-11:59pm PT February 25. Status updates at https://www.nersc.gov/users/live-status
PFAM Domains • Penicillium citreonigrum cont 1189274 v1.0
Annotations/GenomesPenca1Pencit1Penex1Pengl1Penja1Penswi1Penth1TotalAnnotation Description
PFAMs
10,22412,8119,96210,1659,61112,8229,50975,104
117 transmembrane receptor (Secretin family)
44494442443942304ATPase family associated with various cellular activities (AAA)
64557264557663449ABC transporter
444354428ATP synthase alpha/beta family, nucleotide-binding domain
112EGF-like domain
14161414141614102Elongation factor Tu GTP binding domain
111012101391075Helix-loop-helix DNA-binding domain
444386433Hsp20/alpha crystallin family
71276710958Hsp70 protein
778886852KH domain
112Ribulose bisphosphate carboxylase large chain, catalytic domain
111115SH2 domain
23162324241524149SH3 domain
91010910101068Actin
1112795779252139593Ankyrin repeat
31151516PAN domain
877887853ADP-ribosylation factor family
8149121010770Eukaryotic aspartyl protease
444444428Cyclic nucleotide-binding domain
11Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
11111128Cytochrome c
111121411Double-stranded RNA binding motif
15115162011684EF hand
1111154Fe-4S binding domain
21111118Fibronectin type III domain
111122210Globin
16142020162218126Glutathione S-transferase, C-terminal domain
222221112Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
1214Hemopexin
747774743Homeodomain
322434321lactate/malate dehydrogenase, NAD binding domain
454544430Myosin head (motor domain)
125146123141109134103881Cytochrome P450
115143113102109152140874Protein kinase domain
17171927201716133Pyridine nucleotide-disulphide oxidoreductase
25252423252525172Ras family
25301926212718166Response regulator receiver domain
323237626RNase H
63596365635666435RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
11Serpin (serine protease inhibitor)
232212214Copper/zinc superoxide dismutase (SODC)
222222214Iron/manganese superoxide dismutases, alpha-hairpin domain
5786310645Subtilase family
159167114146132116110944Sugar (and other) transporter
1113101310121180Thioredoxin
31131211Trypsin
464436532Tubulin/FtsZ family, GTPase domain
4124213von Willebrand factor type A domain
86378888832987498Zinc finger, C2H2 type
414364843541218Zinc finger, C3HC4 type (RING finger)
323431319Zinc knuckle
223222316Protein-tyrosine phosphatase
1701611581741341371411,075short chain dehydrogenase
10191109107849588675Zinc-binding dehydrogenase
697766748Thiolase, N-terminal domain
36243928224431224Beta-ketoacyl synthase, N-terminal domain
4345624282Fe-2S iron-sulfur cluster binding domain
122211312Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
1010989101066Glutamine amidotransferase class-I
1099910101067TCP-1/cpn60 chaperonin family
553856638Glutamine synthetase, catalytic domain
222222214Triosephosphate isomerase
22251813192320140E1-E2 ATPase
7871087855Core histone H2A/H2B/H3/H4
11Copper binding proteins, plastocyanin/azurin family
17111414161615103Alpha amylase, catalytic domain
222322215Phorbol esters/diacylglycerol binding domain (C1 domain)
85129891061Bacterial transferase hexapeptide (six repeats)
363335326tRNA synthetases class I (I, L, M and V)
797678751Cyclin, N-terminal domain
32293644292722219Carboxylesterase family
454454430DNA polymerase family B
546456434ATP synthase subunit C
334233321Peroxidase
18141313171816109Beta-lactamase
222322215C-5 cytosine-specific DNA methylase
31303435372932228Calcineurin-like phosphoesterase
151211718141087Cellulase (glycosyl hydrolase family 5)
787778953tRNA synthetases class II (D, K and N)
43413840394340284Mitochondrial carrier protein
30282930253323198Aminotransferase class I and II
7491084951Phosphoribosyl transferase domain
111391210101277Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
221232113Ribosomal protein S4/S9 N-terminal domain
222222214Ribosomal protein S12/S23
222112212Bacterial regulatory helix-turn-helix proteins, AraC family
31111119Chaperonin 10 Kd subunit
1210111011101175C2 domain
141016161691596PH domain
11187121217683bZIP transcription factor
31423833303735246Aldehyde dehydrogenase family
4414134074013773923132,744Fungal Zn(2)-Cys(6) binuclear cluster domain
30343134323731229Cytochrome b5-like Heme/Steroid binding domain
443253324Oxidoreductase molybdopterin binding domain
17172215192120131Oxidoreductase NAD-binding domain
24252924272725181SNF2 family N-terminal domain
222222214Ribosomal protein S7p/S5e
20232021202120145Ubiquitin-conjugating enzyme
10891088861Isocitrate/isopropylmalate dehydrogenase
232222215Ribosomal Proteins L2, RNA binding domain
11111117Hsp90 protein
222222214Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
315263222Chitin recognition protein
252422219Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
574243429Cupin
312322215Annexin
111115Eukaryotic-type carbonic anhydrase
111115Chalcone and stilbene synthases, N-terminal domain
4543343262-oxoacid dehydrogenases acyltransferase (catalytic domain)
988866853Catalase
11111117Disintegrin
182117121UDP-glucoronosyl and UDP-glucosyl transferase
9111110811969Aminotransferase class-III
222122213Ribosomal protein S19
11111117DNA gyrase B
1010119911868Thiamine pyrophosphate enzyme, central domain
355434327Lyase
222222214Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11114Sodium:neurotransmitter symporter family
1135Ferritin-like domain
11111117Adenylate and Guanylate cyclase catalytic domain
11111117ATP synthase delta (OSCP) subunit
12111118Orotidine 5'-phosphate decarboxylase / HUMPS family
11111117Indole-3-glycerol phosphate synthase
83234121Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
111311911111177Kinesin motor domain
28282626292728192DnaJ domain
1414141414141498Proteasome subunit
676756542Major intrinsic protein
11111117ATP synthase
656455334Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
213114214Profilin
12111219Ribosomal protein L22p/L17e
222222214Ribosomal protein L14p/L23e
91088108962Ubiquitin family
657546740Cofilin/tropomyosin-type actin-binding protein
23232321714-3-3 protein
423332421Alkaline phosphatase
11111128Zinc carboxypeptidase
43324538464037281Aldo/keto reductase family
16815141661489Myb-like DNA-binding domain
444444428Forkhead domain
12542106746Glycosyl hydrolases family 32 N-terminal domain
131113111Ribosomal protein L16p/L10e
222222214Ribosomal protein S14p/S29e
444444428FKBP-type peptidyl-prolyl cis-trans isomerase
11121118Glutathione peroxidase
2222210
8108998658Flavodoxin
11111117Calreticulin family
645635231Common central domain of tyrosinase
1010119913971Aminotransferase class-V
12111118Ribonucleotide reductase, small chain
40504044404638298DEAD/DEAH box helicase
73757574767373519Helicase conserved C-terminal domain
121212211EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222214Ribosomal protein L23
223222215Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11111117Ribosomal protein L5
677957748Pyridoxal-dependent decarboxylase conserved domain
443244324Citrate synthase, C-terminal domain
656656741GHMP kinases N terminal domain
9108879758Biotin carboxylase, N-terminal domain
342232218Tryptophan synthase alpha chain
18181417171815117Pyridoxal-phosphate dependent enzyme
15201516131619114NUDIX domain
977687650pfkB family carbohydrate kinase
1411917187884Glycosyl hydrolases family 28
141117116Luciferase-like monooxygenase
222222214Ribosomal protein L3
222222214Ribosomal protein L11, RNA binding domain
16141616151314104Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
21115Lipoxygenase
464354430ATP synthase alpha/beta chain, C terminal domain
555355533Calponin homology (CH) domain
635553431Glutamine amidotransferases class-II
222222214Ribosomal protein S15
213'Cold-shock' DNA-binding domain
11Thaumatin family
12121119Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
222222214Ribosomal protein S2
372534630SRF-type transcription factor (DNA-binding and dimerisation domain)
777777951GATA zinc finger
65237266722963390Amino acid permease
385349436Prolyl oligopeptidase family
132112212Ribosomal protein L30p/L7e
1114101613121288Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
453556432Aconitase family (aconitate hydratase)
423334322Glycosyl hydrolase family 10
314441522Glycosyl hydrolases family 17
221122111Ribosomal protein S5, N-terminal domain
11111117Nucleoside diphosphate kinase
11Tetraspanin family
122117Galactoside-binding lectin
222222214Ribosomal protein S10p/S20e
566466639Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
11111117SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222214Ribosomal protein L6
1010410611758Polyprenyl synthetase
666676643Hexokinase
61797617971Dynamin family
11111117Transcription factor TFIID (or TATA-binding protein, TBP)
118991081065Rieske [2Fe-2S] domain
13121210Phytochrome region
33Proton-conducting membrane transporter
111199810866Biotin-requiring enzyme
11111117Phosphofructokinase
11112118Ribosomal protein S17
112215214Hydroxymethylglutaryl-coenzyme A reductase
545445532FGGY family of carbohydrate kinases, N-terminal domain
11Prion/Doppel alpha-helical domain
19171415181412109Enoyl-CoA hydratase/isomerase
222222214Ribosomal protein S9/S16
222222214Transcription factor TFIIB repeat
988877855Cytidine and deoxycytidylate deaminase zinc-binding region
11111128Molybdopterin oxidoreductase
475444432Chromo (CHRromatin Organisation MOdifier) domain
222222214Phosphatidylinositol-specific phospholipase C, Y domain
242224218Phosphatidylinositol-specific phospholipase C, X domain
12129101011973D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
222222214Malic enzyme, N-terminal domain
112PEP-utilising enzyme, mobile domain
3222234186-phosphogluconate dehydrogenase, C-terminal domain
1312915912777Multicopper oxidase
978888856WW domain
12111118Ribosomal RNA adenine dimethylase
116120113118124117127835WD domain, G-beta repeat
576446537Heavy-metal-associated domain
333334322Adenylate kinase
232323217Phosphoglucomutase/phosphomannomutase, C-terminal domain
222222214Ribosomal protein S8
12111219Ribosomal protein S11
443443325LIM domain
11Matrixin
121223112Regulator of chromosome condensation (RCC1) repeat
222322215Ribosomal protein S13/S18
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
322222316chorismate binding enzyme
23333332060s Acidic ribosomal protein
645544533Prenyltransferase and squalene oxidase repeat
747664741Protein kinase C terminal domain
11111117Single-strand binding protein family
11212119S-adenosylmethionine synthetase, N-terminal domain
778578749Bromodomain
1416131514141096Acyl-CoA dehydrogenase, C-terminal domain
14151415151515103Ubiquitin carboxyl-terminal hydrolase
11111117Ribosomal protein L36
222322215Ribonuclease T2 family
11Gonadotropin-releasing hormone
333335323HSF-type DNA-binding
222222214SRP54-type protein, GTPase domain
1111127Urease alpha-subunit, N-terminal domain
891110910966Serine carboxypeptidase
776777748Phosphatidylinositol 3- and 4-kinase
533334526Transketolase, thiamine diphosphate binding domain
121271317Glycosyl hydrolases family 11
444465431Inositol monophosphatase family
544544430Glutaredoxin
725552531Isocitrate lyase family
222222214Serine hydroxymethyltransferase
453444327Iron-containing alcohol dehydrogenase
222122213Ribosomal protein L10
534432425KOW motif
111115Ribosomal protein L34
232223216RF-1 domain
433424323Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
122212212IMP dehydrogenase / GMP reductase domain
11111117Glucose-6-phosphate dehydrogenase, NAD binding domain
788777751Protein phosphatase 2C
232223216Nucleotidyl transferase
264544227Carbonic anhydrase
1111228Phosphoribulokinase / Uridine kinase family
1212812915775Fatty acid desaturase
666656641MutS domain V
11211118Delta-aminolevulinic acid dehydratase
465454331Arginase family
666666642MCM P-loop domain
241423117Squalene/phytoene synthase
9989119964FHA domain
72627069568274485AMP-binding enzyme
343333726G-protein alpha subunit
686864644HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
21261623172412139His Kinase A (phospho-acceptor) domain
323333320Armadillo/beta-catenin-like repeat
34142532301128174Tetratricopeptide repeat
221321112Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
11811101281272BRCA1 C Terminus (BRCT) domain
1411121212101182Glycosyl transferases group 1
424742427Glycosyl transferase family 2
11111117SAM domain (Sterile alpha motif)
11111117linker histone H1 and H5 family
11111117Ribosomal protein L7/L12 C-terminal domain
424334424Pectate lyase
11211118ribonuclease
1111127Urease, gamma subunit
575555537CoA-ligase
41364631256741287Phosphopantetheine attachment site
333333422Formyl transferase
1311111111121382Metallopeptidase family M24
11313161441374Leucine Rich Repeat
4611385644932236alpha/beta hydrolase fold
333333321RNA polymerase Rpb2, domain 6
444444428PB1 domain
222222214Staphylococcal nuclease homologue
1112121112121181Rab-GTPase-TBC domain
11111117Tudor domain
11111117WH1 domain
445444429Zinc finger, ZZ type
222212213HRDC domain
97101198963CBS domain
222222214Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
11111117Clp protease
453334325S1 RNA binding domain
11111117HIUase/Transthyretin family
353564430AhpC/TSA family
444444428tRNA synthetases class I (W and Y)
1311219UvrD/REP helicase N-terminal domain
41038810548Rhodanese-like domain
222222214Universal stress protein family
44334460583444317Acetyltransferase (GNAT) family
11111117SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
222222214AIR synthase related protein, N-terminal domain
878888855tRNA synthetase class II core domain (G, H, P, S and T)
1111116SpoU rRNA Methylase family
222122213Tetrapyrrole (Corrin/Porphyrin) Methylases
21111118Glycosyl transferase family, a/b domain
211116PDZ domain
768655542Class II Aldolase and Adducin N-terminal domain
11Influenza non-structural protein (NS1)
343444527Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
555355533Fes/CIP4, and EFC/F-BAR homology domain
314551423IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
435553429Phospholipase D Active site motif
151118320Regulator of G protein signaling domain
333233320GTPase-activator protein for Ras-like GTPase
545546534RasGEF domain
545545533RasGEF N-terminal motif
778776749RhoGAP domain
666666743RhoGEF domain
222222214SPRY domain
333333321RNA polymerase Rpb1, domain 2
231213214Guanylate kinase
543554531Gelsolin repeat
777774746UBA/TS-N domain
17111715181417109PHD-finger
1111116GGL domain
665666641HECT-domain (ubiquitin-transferase)
11122119Helix-hairpin-helix motif
11111117MSP (Major sperm protein) domain
6468961049Ribonuclease III domain
353334324Region in Clathrin and VPS
332122215RanBP1 domain
212221212PPIC-type PPIASE domain
323232318Zn-finger in Ran binding protein and others
16715151691896Zinc finger C-x8-C-x5-C-x3-H type (and similar)
333433322Poly(ADP-ribose) polymerase catalytic domain
11121118Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
5310596158858307F-box domain
11111117Elongation factor 1 gamma, conserved domain
222222214Calpain family cysteine protease
433333322Copper fist DNA binding domain
101078981163CRAL/TRIO domain
61287515962BTB/POZ domain
21115Ricin-type beta-trefoil lectin domain
11111117Inhibitor of Apoptosis domain
333333321Voltage gated chloride channel
223262320Caspase domain
84104125649GDSL-like Lipase/Acylhydrolase
11111117Poly-adenylate binding protein, unique domain
11NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
27294032224031221ABC transporter transmembrane region
11Integrase core domain
798788653FAD binding domain
24133010112325136Condensation domain
11Bacterial flagellin N-terminal helical region
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
322224217HAMP domain
222222214ribosomal L5P family C-terminus
666666541Insulinase (Peptidase family M16)
464344328Dehydrogenase E1 component
11111117Lumazine binding domain
666566641Elongation factor G C-terminus
564664435HMGL-like
443444427DnaJ central domain
11Sulfotransferase domain
333443323Starch binding domain
233223318Ribosomal protein L1p/L10e family
12101069101067Cation transporting ATPase, C-terminus
161312813121589Cation transporter/ATPase, N-terminus
222222214dUTPase
454556433Aconitase C-terminal domain
345333425Amino acid kinase family
11111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
37243629224632226Acyl transferase domain
1111127Urease beta subunit
1088778553Dihydrodipicolinate synthetase family
48214336411941249haloacid dehalogenase-like hydrolase
7910779655Glycosyl hydrolases family 2
16161515182515120Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
11114Translation initiation factor IF-3, C-terminal domain
11111117Acylphosphatase
11111117Adenylosuccinate synthetase
215113316Asparaginase, N-terminal
443242221Peptidase S24-like
121211210Inorganic pyrophosphatase
612118911966Glycosyl hydrolases family 16
243453324Glycosyl hydrolases family 15
151315156131592NADH:flavin oxidoreductase / NADH oxidase family
48847108493-hydroxyacyl-CoA dehydrogenase, C-terminal domain
343322219Glycosyl hydrolase family 20, catalytic domain
554455432HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
25302634224022199GMC oxidoreductase
322333218Asparagine synthase
7387256561Fungal cellulose binding domain
565656639Septin
12111118EF-1 guanine nucleotide exchange domain
231231113Homoserine dehydrogenase
482429332Flavin-binding monooxygenase-like
11LPXTG cell wall anchor motif
334233321tRNA synthetases class I (E and Q), catalytic domain
11111117tRNA synthetases class I (R)
444444529XPG N-terminal domain
14121715102313104Metallo-beta-lactamase superfamily
22122312F5/8 type C domain
222242216Choline/Carnitine o-acyltransferase
132323216Putative esterase
11111117Ferrochelatase
232322317Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
11111117Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
333333321RNB domain
11681547657Dioxygenase
232233217CNH domain
222322215Diacylglycerol kinase catalytic domain
777878852Dual specificity phosphatase, catalytic domain
222322215P21-Rho-binding domain
1415141414141499PX domain
221222213Ras association (RalGDS/AF-6) domain
545354531UBX domain
443444528VHS domain
11111117Phosphoinositide 3-kinase C2
323223318DAHP synthetase I family
101214141010979Carbon-nitrogen hydrolase
243433221N-acetyltransferase
11Geminivirus Rep catalytic domain
11111117Prephenate dehydratase
324332421Syntaxin
11Pentapeptide repeats (8 copies)
545554533Pumilio-family RNA binding repeat
677657644Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
222222214ER lumen protein retaining receptor
223222316Glycoprotease family
222221112Histidinol dehydrogenase
443444427impB/mucB/samB family
11PPE family
122117
11111117Ribosomal L15
131113111Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
11111117Ribosomal L28 family
11111117Ribosomal L29 protein
11111117Ribosomal L39 protein
111111