PFAM Domains • Gymnopus earleae GB-263.02 v1.0
Annotations/GenomesDenbi1Gyman1Gymear1Gymlu1Ompol1Rhobut1_1TotalAnnotation Description
PFAMs
13,21411,68913,64110,6746,93912,57268,729
117 transmembrane receptor (rhodopsin family)
705846424241299ATPase family associated with various cellular activities (AAA)
608276604454376ABC transporter
551244535ATP synthase alpha/beta family, nucleotide-binding domain
11EGF-like domain
162425171520117Elongation factor Tu GTP binding domain
13141415122189Helix-loop-helix DNA-binding domain
169977553Hsp20/alpha crystallin family
3629299816127Hsp70 protein
199787757KH domain
22116SH2 domain
363120362714164SH3 domain
18191811121492Actin
70621011112753424Ankyrin repeat
22PAN domain
971187749ADP-ribosylation factor family
433244392428210Eukaryotic aspartyl protease
43333319Cyclic nucleotide-binding domain
1111116Cytochrome c
251310115973Double-stranded RNA binding motif
271811716180EF hand
113274Fe-4S binding domain
211116Fibronectin type III domain
272515131021111Glutathione S-transferase, C-terminal domain
1121117Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
11Hemopexin
121189101161Homeodomain
11Laminin EGF domain
33233216lactate/malate dehydrogenase, NAD binding domain
1097741047Myosin head (motor domain)
5183192272631182561,701Cytochrome P450
2102722711861232741,336Protein kinase domain
332015331512128Pyridine nucleotide-disulphide oxidoreductase
373336282428186Ras family
13111211111371Response regulator receiver domain
5836225210133RNase H
757968756865430RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
145Reverse transcriptase (RNA-dependent DNA polymerase)
22223213Iron/manganese superoxide dismutases, alpha-hairpin domain
9326552573Subtilase family
717765543350350Sugar (and other) transporter
1312171291578Thioredoxin
512565538Tubulin/FtsZ family, GTPase domain
415114236von Willebrand factor type A domain
11596471012737423Zinc finger, C2H2 type
88791974399308Zinc finger, C3HC4 type (RING finger)
902817471416212Zinc knuckle
22362419Protein-tyrosine phosphatase
15716111215263106751short chain dehydrogenase
819265594556398Zinc-binding dehydrogenase
55654429Thiolase, N-terminal domain
11107105851Beta-ketoacyl synthase, N-terminal domain
341332162Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
1111127Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
899781051Glutamine amidotransferase class-I
16101112101170TCP-1/cpn60 chaperonin family
34434321Glutamine synthetase, catalytic domain
1111116Triosephosphate isomerase
1712171282086E1-E2 ATPase
233924271623152Core histone H2A/H2B/H3/H4
123Copper binding proteins, plastocyanin/azurin family
151820129781Alpha amylase, catalytic domain
56555531Phorbol esters/diacylglycerol binding domain (C1 domain)
86555635Bacterial transferase hexapeptide (six repeats)
34943427tRNA synthetases class I (I, L, M and V)
14241115131693Cyclin, N-terminal domain
808146482037312Carboxylesterase family
55644529DNA polymerase family B
43333319ATP synthase subunit C
143318137792Peroxidase
19141552661Beta-lactamase
554731337C-5 cytosine-specific DNA methylase
353131302535187Calcineurin-like phosphoesterase
141429161020103Cellulase (glycosyl hydrolase family 5)
87686641tRNA synthetases class II (D, K and N)
464042403540243Mitochondrial carrier protein
213recA bacterial DNA recombination protein
141928231620120Aminotransferase class I and II
96676539Phosphoribosyl transferase domain
301717201116111Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1112117Phosphoglycerate kinase
11222210Ribosomal protein S4/S9 N-terminal domain
22222212Ribosomal protein S12/S23
1111116Chaperonin 10 Kd subunit
212115171615105C2 domain
2320112016898PH domain
9517891967bZIP transcription factor
272218371523142Aldehyde dehydrogenase family
131134991083071573Fungal Zn(2)-Cys(6) binuclear cluster domain
383231221824165Cytochrome b5-like Heme/Steroid binding domain
63323219Oxidoreductase molybdopterin binding domain
1318171210979Oxidoreductase NAD-binding domain
342827292432174SNF2 family N-terminal domain
11321210Ribosomal protein S7p/S5e
272724252124148Ubiquitin-conjugating enzyme
77876641Isocitrate/isopropylmalate dehydrogenase
23222213Ribosomal Proteins L2, RNA binding domain
39522223Hsp90 protein
22232213Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111116Dihydrofolate reductase
76244326Cysteine-rich secretory protein family
1111116Ribosomal protein S3, C-terminal domain
610932333Cupin
42262521Annexin
213Eukaryotic-type carbonic anhydrase
633333212-oxoacid dehydrogenases acyltransferase (catalytic domain)
63753125Catalase
1111116Disintegrin
1821171151486UDP-glucoronosyl and UDP-glucosyl transferase
1341355545Aminotransferase class-III
22222212Ribosomal protein S19
2212119DNA gyrase B
33643524Thiamine pyrophosphate enzyme, central domain
64444527Lyase
332422245Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
42221112Adenylate and Guanylate cyclase catalytic domain
2111117ATP synthase delta (OSCP) subunit
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
22422315Indole-3-glycerol phosphate synthase
32232719Aromatic amino acid lyase
1111116Pyruvate kinase, barrel domain
1715111191275Kinesin motor domain
313334312632187DnaJ domain
16171514141490Proteasome subunit
126863540Major intrinsic protein
1212118ATP synthase
511333328Glycosyl hydrolase family 1
11211173'5'-cyclic nucleotide phosphodiesterase
1111116Profilin
21222211Ribosomal protein L22p/L17e
22222212Ribosomal protein L14p/L23e
332224151422130Ubiquitin family
65555632Cofilin/tropomyosin-type actin-binding protein
4722221914-3-3 protein
41218Alkaline phosphatase
1111116Zinc carboxypeptidase
1368776654364471Aldo/keto reductase family
182110221715103Myb-like DNA-binding domain
75683736Forkhead domain
226111Glycosyl hydrolases family 32 N-terminal domain
2121129Ribosomal protein L16p/L10e
22222212Ribosomal protein S14p/S29e
54444526FKBP-type peptidyl-prolyl cis-trans isomerase
1111116Glutathione peroxidase
21115
1112677447Flavodoxin
11Protamine P1
1121117Calreticulin family
327135232Common central domain of tyrosinase
77101261456Aminotransferase class-V
368521034Ribonucleotide reductase, small chain
1208697524995499DEAD/DEAH box helicase
1551201159883117688Helicase conserved C-terminal domain
1111116Fructose-bisphosphate aldolase class-I
2111117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
32222213Ribosomal protein L23
12333113Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1111116Ribosomal protein L5
87554332Pyridoxal-dependent decarboxylase conserved domain
34733424Citrate synthase, C-terminal domain
56565734GHMP kinases N terminal domain
76666637Biotin carboxylase, N-terminal domain
1122129Tryptophan synthase alpha chain
98997749Pyridoxal-phosphate dependent enzyme
221819181216105NUDIX domain
66753633pfkB family carbohydrate kinase
1219171981489Glycosyl hydrolases family 28
317222228Ribosomal protein L3
22222212Ribosomal protein L11, RNA binding domain
1714171161378Histidine phosphatase superfamily (branch 1)
1111116Thymidylate synthase
1124Lipoxygenase
54544527ATP synthase alpha/beta chain, C terminal domain
75455531Calponin homology (CH) domain
76365431Glutamine amidotransferases class-II
82222218Ribosomal protein S15
597113742Thaumatin family
1111116Fructose-1-6-bisphosphatase, N-terminal domain
27212216Ribonucleotide reductase, all-alpha domain
22222212Ribosomal protein S2
56432222SRF-type transcription factor (DNA-binding and dimerisation domain)
162022221016106GATA zinc finger
304112342011148Amino acid permease
151520651172Prolyl oligopeptidase family
1121128Ribosomal protein L30p/L7e
1712111481274Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
85555634Aconitase family (aconitate hydratase)
137554337Glycosyl hydrolase family 10
24342419Glycosyl hydrolases family 17
22222212Ribosomal protein S5, N-terminal domain
43322216Nucleoside diphosphate kinase
12231312Tetraspanin family
22222212Ribosomal protein S10p/S20e
32222213Arrestin (or S-antigen), N-terminal domain
1111116Phosphoglucose isomerase
1231119Carbohydrate phosphorylase
1121117SecY translocase
1211117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222212Ribosomal protein L6
1069107951Polyprenyl synthetase
22222212Hexokinase
12101274954Dynamin family
3111118Transcription factor TFIID (or TATA-binding protein, TBP)
55333322Rieske [2Fe-2S] domain
11114Phytochrome region
129998855Biotin-requiring enzyme
1111116Phosphofructokinase
22221211Ribosomal protein S17
112211118Hydroxymethylglutaryl-coenzyme A reductase
44444424FGGY family of carbohydrate kinases, N-terminal domain
910914101668Enoyl-CoA hydratase/isomerase
22222212Ribosomal protein S9/S16
22422214Transcription factor TFIIB repeat
86783638Cytidine and deoxycytidylate deaminase zinc-binding region
1111116Molybdopterin oxidoreductase
1516111071372Chromo (CHRromatin Organisation MOdifier) domain
33332317Phosphatidylinositol-specific phospholipase C, Y domain
44533524Phosphatidylinositol-specific phospholipase C, X domain
791767753D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
33232417Malic enzyme, N-terminal domain
21221196-phosphogluconate dehydrogenase, C-terminal domain
45252119820138Multicopper oxidase
1189128755WW domain
25221214Ribosomal RNA adenine dimethylase
3132611854061141781,457WD domain, G-beta repeat
34442421Heavy-metal-associated domain
44433321Adenylate kinase
21311210Phosphoglucomutase/phosphomannomutase, C-terminal domain
2121129Ribosomal protein S8
22222212Ribosomal protein S11
74665735LIM domain
11Matrixin
331035327Regulator of chromosome condensation (RCC1) repeat
22222212Ribosomal protein S13/S18
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
11REV protein (anti-repression trans-activator protein)
22223213chorismate binding enzyme
2454332160s Acidic ribosomal protein
64545327Prenyltransferase and squalene oxidase repeat
78578641Protein kinase C terminal domain
1111116Single-strand binding protein family
1121117S-adenosylmethionine synthetase, N-terminal domain
16141611101178Bromodomain
171081171063Acyl-CoA dehydrogenase, C-terminal domain
16151515151288Ubiquitin carboxyl-terminal hydrolase
11114Ribosomal protein L36
23331113Ribonuclease T2 family
65454428HSF-type DNA-binding
32222213SRP54-type protein, GTPase domain
1111127Urease alpha-subunit, N-terminal domain
322213151214108Serine carboxypeptidase
1015988858Phosphatidylinositol 3- and 4-kinase
31233113Transketolase, thiamine diphosphate binding domain
3664423Glycosyl hydrolases family 11
1113WHEP-TRS domain
35433422Inositol monophosphatase family
85555533Glutaredoxin
46253222Isocitrate lyase family
1114119Serine hydroxymethyltransferase
33233317Iron-containing alcohol dehydrogenase
21231110Ribosomal protein L10
652255649KOW motif
11114Ribosomal protein L34
112Ribosomal protein L33
42322316RF-1 domain
34323217Sodium:solute symporter family
111115Imidazoleglycerol-phosphate dehydratase
1211117DNA polymerase family A
1111116IMP dehydrogenase / GMP reductase domain
12153113Glucose-6-phosphate dehydrogenase, NAD binding domain
1215151392791Protein phosphatase 2C
33432318Nucleotidyl transferase
184442537Carbonic anhydrase
1111116Phosphoribulokinase / Uridine kinase family
1920159131692Fatty acid desaturase
69976744MutS domain V
1111116Delta-aminolevulinic acid dehydratase
175755544Arginase family
77766639MCM P-loop domain
1121139Squalene/phytoene synthase
14151614112393FHA domain
856770773682417AMP-binding enzyme
223026251423140G-protein alpha subunit
282522281430147HMG (high mobility group) box
88788645His Kinase A (phospho-acceptor) domain
322122223Armadillo/beta-catenin-like repeat
18210219642519411Tetratricopeptide repeat
43433320Ion transport protein
22241112DNA gyrase/topoisomerase IV, subunit A
912998754BRCA1 C Terminus (BRCT) domain
68786641Glycosyl transferases group 1
44263524Glycosyl transferase family 2
32122212SAM domain (Sterile alpha motif)
63443323linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
5319Pectate lyase
311319ribonuclease
1111138Urease, gamma subunit
34443422CoA-ligase
312417161414116Phosphopantetheine attachment site
22221211Formyl transferase
14111110101672Metallopeptidase family M24
191762015380Leucine Rich Repeat
907316543716286alpha/beta hydrolase fold
33533320RNA polymerase Rpb2, domain 6
56644934PB1 domain
22222212Staphylococcal nuclease homologue
1211131391573Rab-GTPase-TBC domain
1111116Tudor domain
113128WH1 domain
64443526Zinc finger, ZZ type
1111116HRDC domain
12105881053CBS domain
42222214Ribosomal protein L13
22222212Ribosomal protein L4/L1 family
111115Clp protease
56433425S1 RNA binding domain
1111116HIUase/Transthyretin family
896106847AhpC/TSA family
65444528tRNA synthetases class I (W and Y)
41311212UvrD/REP helicase N-terminal domain
74964939Rhodanese-like domain
22222212Universal stress protein family
455528402025213Acetyltransferase (GNAT) family
111115SecE/Sec61-gamma subunits of protein translocation complex
1111116C-terminal regulatory domain of Threonine dehydratase
22222212AIR synthase related protein, N-terminal domain
67766537tRNA synthetase class II core domain (G, H, P, S and T)
11Phage integrase family
44243219Tetrapyrrole (Corrin/Porphyrin) Methylases
52221214Glycosyl transferase family, a/b domain
310462530Class II Aldolase and Adducin N-terminal domain
54444526Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
76665636Fes/CIP4, and EFC/F-BAR homology domain
64233220IQ calmodulin-binding motif
27422219Phosphoinositide 3-kinase family, accessory domain (PIK domain)
34243117Phospholipase D Active site motif
12211411Regulator of G protein signaling domain
44464426GTPase-activator protein for Ras-like GTPase
59966641RasGEF domain
77877541RasGEF N-terminal motif
14121111111372RhoGAP domain
191916191322108RhoGEF domain
65443527SPRY domain
48453327RNA polymerase Rpb1, domain 2
1111116Guanylate kinase
53344423Gelsolin repeat
237999663UBA/TS-N domain
212115171414102PHD-finger
12126GGL domain
55665633HECT-domain (ubiquitin-transferase)
111115Helix-hairpin-helix motif
1111116MSP (Major sperm protein) domain
10105105444Ribonuclease III domain
214522429Region in Clathrin and VPS
33332519RanBP1 domain
21222211PPIC-type PPIASE domain
33343218Zn-finger in Ran binding protein and others
333014281911135Zinc finger C-x8-C-x5-C-x3-H type (and similar)
111115B-box zinc finger
1012953948Poly(ADP-ribose) polymerase catalytic domain
25321215Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
220246261854765789F-box domain
14211110Elongation factor 1 gamma, conserved domain
81222116Calpain family cysteine protease
2333314Copper fist DNA binding domain
1098378880CRAL/TRIO domain
811271072386BTB/POZ domain
7714322Ricin-type beta-trefoil lectin domain
1111116Inhibitor of Apoptosis domain
33333318Voltage gated chloride channel
2813820638113Caspase domain
2212121151375GDSL-like Lipase/Acylhydrolase
22222212Poly-adenylate binding protein, unique domain
2221119POLO box duplicated region
244642302123186ABC transporter transmembrane region
9716Integrase core domain
76545431FAD binding domain
710243531Condensation domain
1111116S-adenosyl-L-homocysteine hydrolase, NAD binding domain
2112129HAMP domain
22222212ribosomal L5P family C-terminus
69565536Insulinase (Peptidase family M16)
44444525Dehydrogenase E1 component
1111116Lumazine binding domain
9139871056Elongation factor G C-terminus
84555431HMGL-like
44444424DnaJ central domain
34743526Starch binding domain
22322415Ribosomal protein L1p/L10e family
64454831Cation transporting ATPase, C-terminus
87675942Cation transporter/ATPase, N-terminus
11411210dUTPase
96555535Aconitase C-terminal domain
33533320Amino acid kinase family
1111116N-(5'phosphoribosyl)anthranilate (PRA) isomerase
131610125662Acyl transferase domain
1111138Urease beta subunit
44333219Dihydrodipicolinate synthetase family
413512362415163haloacid dehalogenase-like hydrolase
43333319Glycosyl hydrolases family 2
1815141391685Glycosyl hydrolases family 18
1111116Proliferating cell nuclear antigen, N-terminal domain
11Translation initiation factor IF-3, C-terminal domain
1111116Adenylosuccinate synthetase
1111116Asparaginase, N-terminal
42331316Peptidase S24-like
1211117Inorganic pyrophosphatase
510171061361Glycosyl hydrolases family 16
56543528Glycosyl hydrolases family 15
475837271626211NADH:flavin oxidoreductase / NADH oxidase family
11121283-hydroxyacyl-CoA dehydrogenase, C-terminal domain
33643322Glycosyl hydrolase family 20, catalytic domain
65554631HhH-GPD superfamily base excision DNA repair protein
3111118AIR carboxylase
834840712339304GMC oxidoreductase
32322214Asparagine synthase
273436321519163Fungal cellulose binding domain
778761045Septin
1111116EF-1 guanine nucleotide exchange domain
1111116Homoserine dehydrogenase
979731146Flavin-binding monooxygenase-like
11LPXTG cell wall anchor motif
74333323tRNA synthetases class I (E and Q), catalytic domain
1211117tRNA synthetases class I (R)
65655532XPG N-terminal domain
1116151891382Metallo-beta-lactamase superfamily
121116F5/8 type C domain
54544426Choline/Carnitine o-acyltransferase
1111116Putative esterase
1121117Glycosyl hydrolase family 9
1111127Ferrochelatase
221222222Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1111116Arginosuccinate synthase
1111116Electron transfer flavoprotein FAD-binding domain
33343319RNB domain
74255326Dioxygenase
78101141252CNH domain
32222213Diacylglycerol kinase catalytic domain
16151212111379Dual specificity phosphatase, catalytic domain
1111116MyTH4 domain
64533324P21-Rho-binding domain
15171814131693PX domain
53483225Ras association (RalGDS/AF-6) domain
44443322UBX domain
44655529VHS domain
13311110Phosphoinositide 3-kinase C2
33222315DAHP synthetase I family
116657540Carbon-nitrogen hydrolase
42112212N-acetyltransferase
111115Prephenate dehydratase
53454526Syntaxin
59456736Pumilio-family RNA binding repeat
137675644Histone-like transcription factor (CBF/NF-Y) and archaeal histone
2111117Pterin binding enzyme
1113118ER lumen protein retaining receptor
32222213Glycoprotease family
1111116Histidinol dehydrogenase
33533421impB/mucB/samB family
12115
1111116Ribosomal L15
11311310Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
2111117Ribosomal prokaryotic L21 protein
1111116Ribosomal L28 family
1111116Ribosomal L29 protein
1111127Ribosomal L39 protein
1111116Ribosomal S17
1111116Ribulose-phosphate 3 epimerase family
1111116Translationally controlled tumour protein
9121474955Glycosyl hydrolase family 7
72222217RNA pseudouridylate synthase
67666637Histone deacetylase domain
101122117POT family
22232314PWWP domain
282226231030139SET domain
771085744Isochorismatase family
52322620Permease family
1111116Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
1898551762XPG I-region
11Acetokinase family
1111217DNA photolyase
1113Cation-independent mannose-6-phosphate receptor repeat
3328Nitroreductase family
47221521Cytosol aminopeptidase family, catalytic domain
41231213Sulfatase
11111166,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
33333318Acyl CoA binding protein
86775639Cullin family
1111116Elongation factor TS
67695538FAD binding domain
16191525820103O-methyltransferase domain
53534323EamA-like transporter family
332210
87778744ThiF family
1111116Ribosomal family S4e
32111412Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
56733327Ammonium Transporter Family
58433528Sulfate permease family
1111116MATH domain
33222214Dehydratase family
114453532Transaldolase/Fructose-6-phosphate aldolase
31333316Mechanosensitive ion channel
11411210GTP cyclohydrolase II
521111113,4-dihydroxy-2-butanone 4-phosphate synthase
46544528Adaptor complexes medium subunit family
88777744Exonuclease
1111116Dipeptidyl peptidase IV (DPP IV) N-terminal region
36842113NB-ARC domain
20191415101694Glycosyl hydrolase family 3 N terminal domain
112116Ribosomal protein L44
112Sodium:sulfate symporter transmembrane region
2111117DNA-dependent RNA polymerase
1111116Glycosyl transferase family 4
111115HCO3- transporter family
22223314Nucleosome assembly protein (NAP)
43454424Synaptobrevin
14411112GMP synthase C terminal domain
54533323Adenosine/AMP deaminase
510464433Oxidoreductase FAD-binding domain
310462227Thioesterase domain
22222212Histidine biosynthesis protein
53433321Glycosyltransferase family 20
121116UDP-glucose/GDP-mannose dehydrogenase family, central domain
22222212Carbamoyl-phosphate synthase small chain, CPSase domain
21115PAS fold
32222213Probable molybdopterin binding domain
46444426Sec1 family
22222212GDP dissociation inhibitor
978771048Sodium/hydrogen exchanger family
32222415RNA polymerase Rpb3/RpoA insert domain
33333318Initiation factor 2 subunit family
1113PQQ enzyme repeat
22222212Electron transfer flavoprotein domain
1111116Uricase
1111116Ribosomal S3Ae family
1111116Ribosomal L27 protein
1111116GTP1/OBG
94543328Gamma-glutamyltranspeptidase
12115Ribosomal L40e family
1111116GrpE
53333320TatD related DNase
1121128Inhibitor of apoptosis-promoting Bax1
1111116Eukaryotic DNA topoisomerase I, catalytic core
69833635Dynamin central region
122323136-O-methylguanine DNA methyltransferase, DNA binding domain
32222213Carboxyl transferase domain
151118951977UbiA prenyltransferase family
112DegT/DnrJ/EryC1/StrS aminotransferase family
77753433Endoribonuclease L-PSP
11338Phosphorylase superfamily
11114Mannose-6-phosphate isomerase
91216961062Cys/Met metabolism PLP-dependent enzyme
13138114958Glycosyl hydrolases family 31