PFAM Domains • Syncephalastrum racemosum NRRL 2496 v1.0
Annotations/GenomesBacci1Lichy1Mucci2Phybl2Rhich1Rhimi1_1Rhimi_ATCC11559_1Rhimi_ATCC52814_1Rhior3Synrac1Umbra1TotalAnnotation Description
PFAMs
13,47810,4669,5849,21615,2568,6268,4788,51212,21810,7988,515115,147
227 transmembrane receptor (Secretin family)
51435313133327 transmembrane sweet-taste receptor of 3 GCPR
5345444865383737514640504ATPase family associated with various cellular activities (AAA)
6760524860343233443735502ABC transporter
1259124786118789ATP synthase alpha/beta family, nucleotide-binding domain
113211110EGF-like domain
2519172130181719242118229Elongation factor Tu GTP binding domain
7551373574394240523331509Helix-loop-helix DNA-binding domain
4271477733256Hsp20/alpha crystallin family
191411121810101018149145Hsp70 protein
1915141222131413161213163KH domain
11Ribulose bisphosphate carboxylase large chain, catalytic domain
1111111119SH2 domain
8965413791484850553445603SH3 domain
1612111118111111151110137Actin
715142379545464965664571Ankyrin repeat
151112101399811109117ADP-ribosylation factor family
3527273338202020352323301Eukaryotic aspartyl protease
79771277797685Cyclic nucleotide-binding domain
11Cytochrome b(C-terminal)/b6/petD
1135Cytochrome b/b6/petB
2311321222120Cytochrome c
1311111112215Double-stranded RNA binding motif
544443355533313448134412EF hand
1211411151184Fe-4S binding domain
221111111112Fibronectin type III domain
4222422221124Globin
2012137191110912515133Glutathione S-transferase, C-terminal domain
6233633344138Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
5537272851292829372018359Homeodomain
8655633345351lactate/malate dehydrogenase, NAD binding domain
22Lectin C-type domain
211517162816161619128184Myosin head (motor domain)
8564415463353131485049551Cytochrome P450
3582772372203862102072112962131652,780Protein kinase domain
2319181628151515211416200Pyridine nucleotide-disulphide oxidoreductase
8259605485515151655139648Ras family
3033151827171616211920232Response regulator receiver domain
122214113RNase H
137109889716596989511283951,175RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
14950Retroviral aspartyl protease
13454703522Reverse transcriptase (RNA-dependent DNA polymerase)
5332633353238Copper/zinc superoxide dismutase (SODC)
1121211121114Iron/manganese superoxide dismutases, alpha-hairpin domain
3119162427151516241711215Subtilase family
6646472842222222464447432Sugar (and other) transporter
1814151324161415151813175Thioredoxin
11Thyroglobulin type-1 repeat
11Trefoil (P-type) domain
5542533342642Trypsin
1313899888114697Tubulin/FtsZ family, GTPase domain
17412714020314787868813837691,296Zinc finger, C2H2 type
967064557760485041762630Zinc finger, C3HC4 type (RING finger)
1821457037231820132819411Zinc knuckle
7365855585360Protein-tyrosine phosphatase
4945453349272726313971442short chain dehydrogenase
4628292339232223283134326Zinc-binding dehydrogenase
961051155578677Thiolase, N-terminal domain
3232323332228Beta-ketoacyl synthase, N-terminal domain
54448444512452Fe-2S iron-sulfur cluster binding domain
3322422222125Enolase, C-terminal TIM barrel domain
213Cytochrome C and Quinol oxidase polypeptide I
1113Cytochrome C oxidase subunit II, periplasmic domain
131191017999998113Glutamine amidotransferase class-I
1513111516111011181111142TCP-1/cpn60 chaperonin family
11ATP synthase A chain
97561055564466Glutamine synthetase, catalytic domain
2111211111113Triosephosphate isomerase
4926302648262526343025345E1-E2 ATPase
212414201314141320149176Core histone H2A/H2B/H3/H4
11Copper binding proteins, plastocyanin/azurin family
2311412232627Alpha amylase, catalytic domain
17144724111313131210138Phorbol esters/diacylglycerol binding domain (C1 domain)
888517876971093Bacterial transferase hexapeptide (six repeats)
6444844476455tRNA synthetases class I (I, L, M and V)
1821181833201819171316211Cyclin, N-terminal domain
231212232624Carboxylesterase family
5454844465554DNA polymerase family B
8354844453452ATP synthase subunit C
1111111119Legume lectin domain
4242633333235Peroxidase
1312111414Beta-lactamase
1324211112220C-5 cytosine-specific DNA methylase
1113NADH dehydrogenase
4939373450333031373729406Calcineurin-like phosphoesterase
5534644445852Cellulase (glycosyl hydrolase family 5)
86661066676673tRNA synthetases class II (D, K and N)
8066635490525453635345673Mitochondrial carrier protein
11recA bacterial DNA recombination protein
2721202034181818222015233Aminotransferase class I and II
14131311161010101559126Phosphoribosyl transferase domain
1515151427161817171311178Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1221211122116Phosphoglycerate kinase
3433234353336Ribosomal protein S4/S9 N-terminal domain
4444644463346Ribosomal protein S12/S23
22Bacterial regulatory helix-turn-helix proteins, AraC family
1122111111113Chaperonin 10 Kd subunit
3632232241202020261719276C2 domain
85794448102535053603645655PH domain
4832281949263029382713339bZIP transcription factor
2025151222121212151813176Aldehyde dehydrogenase family
9280464777523746305660623Fungal Zn(2)-Cys(6) binuclear cluster domain
6042413969373938412930465Cytochrome b5-like Heme/Steroid binding domain
232111112216Oxidoreductase molybdopterin binding domain
1917161323131313141414169Oxidoreductase NAD-binding domain
2624202036222222262321262SNF2 family N-terminal domain
4543633353342Ribosomal protein S7p/S5e
2623222043222222261820264Ubiquitin-conjugating enzyme
1110881277797692Isocitrate/isopropylmalate dehydrogenase
6454444454448Ribosomal Proteins L2, RNA binding domain
5544844455351Hsp90 protein
4236422242233Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
2222422211222Dihydrofolate reductase
4861422223337Cysteine-rich secretory protein family
5454334433240Ribosomal protein S3, C-terminal domain
65646444634522-oxoacid dehydrogenases acyltransferase (catalytic domain)
7342633343341Catalase
6232222232329Disintegrin
20510111757122585UDP-glucoronosyl and UDP-glucosyl transferase
8566955566566Aminotransferase class-III
7444432354343Ribosomal protein S19
1111211111112DNA gyrase B
7263433353342Thiamine pyrophosphate enzyme, central domain
4444633346445Lyase
5333733333339Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1222322232425Ferritin-like domain
4322422232127Adenylate and Guanylate cyclase catalytic domain
2211211121115ATP synthase delta (OSCP) subunit
1111111111111Orotidine 5'-phosphate decarboxylase / HUMPS family
2111111111112Indole-3-glycerol phosphate synthase
4433633353239Pyruvate kinase, barrel domain
3629282046282628332218314Kinesin motor domain
4535393467373535383230427DnaJ domain
1714141426141414261413180Proteasome subunit
1222111122419Major intrinsic protein
212221112115ATP synthase
22Glycosyl hydrolase family 1
128869666853773'5'-cyclic nucleotide phosphodiesterase
1111322221117Profilin
5445844453248Ribosomal protein L22p/L17e
4433433363339Ribosomal protein L14p/L23e
3123222335212019281720259Ubiquitin family
78641266686675Cofilin/tropomyosin-type actin-binding protein
663384447335114-3-3 protein
5543533343240Alkaline phosphatase
22Zinc carboxypeptidase
4229262034181818192528277Aldo/keto reductase family
3937232061333131331825351Myb-like DNA-binding domain
14101010136771277103Forkhead domain
11125Glycosyl hydrolases family 32 N-terminal domain
1111211123115Ribosomal protein L16p/L10e
5444233343338Ribosomal protein S14p/S29e
97661055567773FKBP-type peptidyl-prolyl cis-trans isomerase
2212322231121Glutathione peroxidase
545364344341
2117151320111011141014156Flavodoxin
1112211121114Calreticulin family
9675954557769Aminotransferase class-V
3231211121118Ribonucleotide reductase, small chain
5251484785474749575545583DEAD/DEAH box helicase
99888174128777878848275944Helicase conserved C-terminal domain
2111211111113EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
5443433353340Ribosomal protein L23
331111122116Pyridoxal-dependent decarboxylase, C-terminal sheet domain
5435544473347Ribosomal protein L5
6445533344647Pyridoxal-dependent decarboxylase conserved domain
2212211112116Citrate synthase, C-terminal domain
76661266666673GHMP kinases N terminal domain
1211111116889998112Biotin carboxylase, N-terminal domain
1111211121113Tryptophan synthase alpha chain
1291091599910911112Pyridoxal-phosphate dependent enzyme
156'Paired box' domain
2618231639202021231815239NUDIX domain
106761066665674pfkB family carbohydrate kinase
55297755188374Glycosyl hydrolases family 28
5243533353238Ribosomal protein L3
6445744474453Ribosomal protein L11, RNA binding domain
13111111161010107810117Histidine phosphatase superfamily (branch 1)
1111211111112Thymidylate synthase
1189123766118788ATP synthase alpha/beta chain, C terminal domain
13161292112999138131Calponin homology (CH) domain
21115Bacterial dnaA protein
109126966684581Glutamine amidotransferases class-II
3432633353338Ribosomal protein S15
232221112218'Cold-shock' DNA-binding domain
7845844464458Thaumatin family
1111211121113Fructose-1-6-bisphosphatase, N-terminal domain
5342633332236Ribonucleotide reductase, all-alpha domain
7344433263342Ribosomal protein S2
141310714999966106SRF-type transcription factor (DNA-binding and dimerisation domain)
6543363568393740393322457GATA zinc finger
351921193418181824825239Amino acid permease
95661266676877Prolyl oligopeptidase family
6655844473153Ribosomal protein L30p/L7e
6552745553552Histidine phosphatase superfamily (branch 2)
2211211111114Respiratory-chain NADH dehydrogenase, 30 Kd subunit
6665955564663Aconitase family (aconitate hydratase)
11Glycosyl hydrolase family 10
4431232225533Glycosyl hydrolases family 17
5545333363343Ribosomal protein S5, N-terminal domain
6464955555357Nucleoside diphosphate kinase
7665234415447Tetraspanin family
3333633363238Ribosomal protein S10p/S20e
4625222232201616172520261Arrestin (or S-antigen), N-terminal domain
1311211112115Phosphoglucose isomerase
3232222117Carbohydrate phosphorylase
4222422332127SecY translocase
1111211121113Respiratory-chain NADH dehydrogenase, 49 Kd subunit
4434633343340Ribosomal protein L6
6554955555357Polyprenyl synthetase
17121171688811118117Hexokinase
98781377788688Dynamin family
1111211121113Biopterin-dependent aromatic amino acid hydroxylase
3222111121117Transcription factor TFIID (or TATA-binding protein, TBP)
5555543444448Rieske [2Fe-2S] domain
2147Proton-conducting membrane transporter
1513121019101111121110134Biotin-requiring enzyme
4222422222226Phosphofructokinase
3222122232223Ribosomal protein S17
2331322222123Hydroxymethylglutaryl-coenzyme A reductase
95661266675573FGGY family of carbohydrate kinases, N-terminal domain
332121111116Sodium:dicarboxylate symporter family
1714141123121212131012150Enoyl-CoA hydratase/isomerase
5344844463348Ribosomal protein S9/S16
3233422232329Transcription factor TFIIB repeat
1010941066656779Cytidine and deoxycytidylate deaminase zinc-binding region
211211121113Molybdopterin oxidoreductase
231592237181217239116409Chromo (CHRromatin Organisation MOdifier) domain
11Phosphatidylinositol-specific phospholipase C, X domain
6655855564560D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
7654855555358Malic enzyme, N-terminal domain
11PEP-utilising enzyme, mobile domain
32324222321266-phosphogluconate dehydrogenase, C-terminal domain
7855735457561Multicopper oxidase
26168725131312171512164WW domain
3333633333336Ribosomal RNA adenine dimethylase
2041711581622881571581611731621451,939WD domain, G-beta repeat
11Calponin family repeat
5454533335444Heavy-metal-associated domain
85651055554462Adenylate kinase
2322422234228Phosphoglucomutase/phosphomannomutase, C-terminal domain
5433633353240Ribosomal protein S8
4343633332337Ribosomal protein S11
1912131424151412111612162LIM domain
3314844465446Regulator of chromosome condensation (RCC1) repeat
4442444453341Ribosomal protein S13/S18
21121111111Tau and MAP protein, tubulin-binding repeat
112NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
4222322222225chorismate binding enzyme
159871377711659560s Acidic ribosomal protein
4444844443447Prenyltransferase and squalene oxidase repeat
17149111710101014810130Protein kinase C terminal domain
11Spectrin repeat
1111211121113Single-strand binding protein family
2111211121114S-adenosylmethionine synthetase, N-terminal domain
2317201427181616181612197Bromodomain
2120151625171617201712196Acyl-CoA dehydrogenase, C-terminal domain
2723262143222221252019269Ubiquitin carboxyl-terminal hydrolase
111111118Ribosomal protein L36
2214431222326Ribonuclease T2 family
2924201425141415181912204HSF-type DNA-binding
2222422222224SRP54-type protein, GTPase domain
3122211111116Urease alpha-subunit, N-terminal domain
7957744476363Serine carboxypeptidase
15101310211211121299134Phosphatidylinositol 3- and 4-kinase
6322322224230Transketolase, thiamine diphosphate binding domain
11121111211WHEP-TRS domain
2222422222224Inositol monophosphatase family
881051366665679Glutaredoxin
4221422222225Isocitrate lyase family
2222422222224Serine hydroxymethyltransferase
2111211121114Iron-containing alcohol dehydrogenase
3142533353133Ribosomal protein L10
1451087666236798KOW motif
1111211111112Ribosomal protein L34
112111119Ribosomal protein L33
3332533333233RF-1 domain
111211111111Sodium:solute symporter family
2111211111113Imidazoleglycerol-phosphate dehydratase
1111111111111DNA polymerase family A
3121211121116IMP dehydrogenase / GMP reductase domain
5433422243234Glucose-6-phosphate dehydrogenase, NAD binding domain
17111011181110101786129Protein phosphatase 2C
77641165665568Nucleotidyl transferase
3222111111116Carbonic anhydrase
3221422232225Phosphoribulokinase / Uridine kinase family
137816147771056100Fatty acid desaturase
67761066656671MutS domain V
1121211111113Delta-aminolevulinic acid dehydratase
3523422235334Arginase family
6666966677671MCM P-loop domain
3334633343237Squalene/phytoene synthase
2925171832151717201914223FHA domain
112NADH-ubiquinone/plastoquinone oxidoreductase chain 6
5747373657303230394225432AMP-binding enzyme
171412101488811119122G-protein alpha subunit
3133212337192020292416273HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
11Cytochrome c oxidase subunit III
15187813887121012118His Kinase A (phospho-acceptor) domain
198101018898987114Armadillo/beta-catenin-like repeat
5744363170373734431736442Tetratricopeptide repeat
18987944445880Ion transport protein
1111211111112DNA gyrase/topoisomerase IV, subunit A
1311106151211118912118BRCA1 C Terminus (BRCT) domain
910981277798793Glycosyl transferases group 1
8545733352651Glycosyl transferase family 2
942310787122367SAM domain (Sterile alpha motif)
231111132318linker histone H1 and H5 family
121211121113Ribosomal protein L7/L12 C-terminal domain
3122211111116Urease, gamma subunit
7643533355347CoA-ligase
98888444109678Phosphopantetheine attachment site
2222422222224Formyl transferase
11Cellulose binding domain
1613151426151516171212171Metallopeptidase family M24
453533334727242534926338Leucine Rich Repeat
333025232816171716632243alpha/beta hydrolase fold
4433533353339RNA polymerase Rpb2, domain 6
1717810178999128124PB1 domain
2222422223225Staphylococcal nuclease homologue
4532272941222322262620313Rab-GTPase-TBC domain
1111211111112Tudor domain
3221312113221WH1 domain
9655755465764Zinc finger, ZZ type
2121211111215HRDC domain
2417181831151616221414205CBS domain
6435844453248Ribosomal protein L13
5444533352240Ribosomal protein L4/L1 family
1111111111111Clp protease
4533644443545S1 RNA binding domain
1111111111111HIUase/Transthyretin family
86551055585769AhpC/TSA family
4444744344446tRNA synthetases class I (W and Y)
12111111110UvrD/REP helicase N-terminal domain
911881378671410101Rhodanese-like domain
17912121999106910122Universal stress protein family
4933432747282827292639376Acetyltransferase (GNAT) family
1112211121114SecE/Sec61-gamma subunits of protein translocation complex
1111211111112C-terminal regulatory domain of Threonine dehydratase