PFAM Domains • Clitocybe gibba IJFM A808 v1.0
Annotations/GenomesCligib1Lacam2Lacbi2Lepnud1Mycgal1Panst_KUC8834_1_1Panst_LUM_1_1Ricfib1Ricmel1Trima3TotalAnnotation Description
PFAMs
10,9327,7938,65610,62621,2558,99311,48911,8318,9457,499108,019
117 transmembrane receptor (rhodopsin family)
43393943775154464144477ATPase family associated with various cellular activities (AAA)
464349501155356657146594ABC transporter
454444554544ATP synthase alpha/beta family, nucleotide-binding domain
213EGF-like domain
15171616201721181815173Elongation factor Tu GTP binding domain
10142010231415121112141Helix-loop-helix DNA-binding domain
7810111011956582Hsp20/alpha crystallin family
42131511138828199166Hsp70 protein
9989888811785KH domain
111115SH2 domain
15324015332917193527262SH3 domain
11u-PAR/Ly-6 domain
10161510221319141312144Actin
6279551604210124260459Ankyrin repeat
134PAN domain
8998148101011895ADP-ribosylation factor family
582524151193334585515436Eukaryotic aspartyl protease
333343433332Cyclic nucleotide-binding domain
11Cytochrome b(C-terminal)/b6/petD
22Cytochrome b/b6/petB
111132311115Cytochrome c
4141111137585886Double-stranded RNA binding motif
11918131712221599EF hand
1231184Fe-4S binding domain
1111116Fibronectin type III domain
3191313541310132018194Glutathione S-transferase, C-terminal domain
1125111111125Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
11Hemopexin
8111011131111111215113Homeodomain
112Laminin EGF domain
222222222220lactate/malate dehydrogenase, NAD binding domain
867495655560Myosin head (motor domain)
27987861785441251501401361031,828Cytochrome P450
2031932171894551852104003501502,552Protein kinase domain
11121411211916112011146Pyridine nucleotide-disulphide oxidoreductase
42375335893135353228417Ras family
77792410916158112Response regulator receiver domain
23589482829117168RNase H
57837163806758606871678RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
77Reverse transcriptase (RNA-dependent DNA polymerase)
111111111110Copper/zinc superoxide dismutase (SODC)
233233324227Iron/manganese superoxide dismutases, alpha-hairpin domain
125518775271583175Subtilase family
75232149943945342426430Sugar (and other) transporter
111110916131513119118Thioredoxin
5565107794563Tubulin/FtsZ family, GTPase domain
146135626von Willebrand factor type A domain
11WAP-type (Whey Acidic Protein) 'four-disulfide core'
18666322416835194849429Zinc finger, C2H2 type
867666207111107055384Zinc finger, C3HC4 type (RING finger)
14113472917111113147Zinc knuckle
322332232224Protein-tyrosine phosphatase
93514976279123144576454990short chain dehydrogenase
282631431055256263230429Zinc-binding dehydrogenase
844654454448Thiolase, N-terminal domain
65573881068295Beta-ketoacyl synthase, N-terminal domain
147122133242Fe-2S iron-sulfur cluster binding domain
33Papain family cysteine protease
111121121112Enolase, C-terminal TIM barrel domain
213Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
88139138987891Glutamine amidotransferase class-I
1112131010111110189115TCP-1/cpn60 chaperonin family
112ATP synthase A chain
337655733345Glutamine synthetase, catalytic domain
111111111110Triosephosphate isomerase
19132016271819231217184E1-E2 ATPase
17252418491920141823227Core histone H2A/H2B/H3/H4
1231119Copper binding proteins, plastocyanin/azurin family
157910151314776103Alpha amylase, catalytic domain
466557496658Phorbol esters/diacylglycerol binding domain (C1 domain)
544464265646Bacterial transferase hexapeptide (six repeats)
533443455339tRNA synthetases class I (I, L, M and V)
10141411162314161011139Cyclin, N-terminal domain
32141530117444920187346Carboxylesterase family
54444445438DNA polymerase family B
334333433332ATP synthase subunit C
1433468121425262171Peroxidase
2242124888431112Beta-lactamase
444584444344C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
26333320463733292830315Calcineurin-like phosphoesterase
20992438162228198193Cellulase (glycosyl hydrolase family 5)
555566577556tRNA synthetases class II (D, K and N)
40374138464044444137408Mitochondrial carrier protein
11recA bacterial DNA recombination protein
16151215281721141413165Aminotransferase class I and II
278445347751Phosphoribosyl transferase domain
12121313221313141212136Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
111111111110Phosphoglycerate kinase
223222222221Ribosomal protein S4/S9 N-terminal domain
222222222220Ribosomal protein S12/S23
111111211111Chaperonin 10 Kd subunit
14141816361614161517176C2 domain
8222491022692420154PH domain
867121458107683bZIP transcription factor
26151518561718141820217Aldehyde dehydrogenase family
54797362210137118101123731,030Fungal Zn(2)-Cys(6) binuclear cluster domain
24222327252423242324239Cytochrome b5-like Heme/Steroid binding domain
233511111119Oxidoreductase molybdopterin binding domain
7881015101188691Oxidoreductase NAD-binding domain
31242225302730382823278SNF2 family N-terminal domain
223222222221Ribosomal protein S7p/S5e
20222324382322262121240Ubiquitin-conjugating enzyme
666667686663Isocitrate/isopropylmalate dehydrogenase
222222222220Ribosomal Proteins L2, RNA binding domain
222222222220Hsp90 protein
332232222223Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111121111111Dihydrofolate reductase
6511114Chitin recognition protein
7109252222142Cysteine-rich secretory protein family
111111121111Ribosomal protein S3, C-terminal domain
3213116855145Cupin
1122211111Annexin
2810Eukaryotic-type carbonic anhydrase
6118Chalcone and stilbene synthases, N-terminal domain
3333433343322-oxoacid dehydrogenases acyltransferase (catalytic domain)
311363423228Catalase
111111111110Disintegrin
24161531436UDP-glucoronosyl and UDP-glucosyl transferase
56651071055564Aminotransferase class-III
224222232223Ribosomal protein S19
111111111110DNA gyrase B
523374433337Thiamine pyrophosphate enzyme, central domain
444433333334Lyase
133222222221Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
521132311120Adenylate and Guanylate cyclase catalytic domain
11111122111ATP synthase delta (OSCP) subunit
111111111110Orotidine 5'-phosphate decarboxylase / HUMPS family
222211111215Indole-3-glycerol phosphate synthase
222235511225Aromatic amino acid lyase
111111111110Pyruvate kinase, barrel domain
1410109111210101010106Kinesin motor domain
29323631352929283030309DnaJ domain
16141414181618161415155Proteasome subunit
9675106712760Major intrinsic protein
111111111110ATP synthase
3453511224Glycosyl hydrolase family 1
1111211111113'5'-cyclic nucleotide phosphodiesterase
111111111110Profilin
211231221419Ribosomal protein L22p/L17e
222262243227Ribosomal protein L14p/L23e
20282117201517232722210Ubiquitin family
555575556553Cofilin/tropomyosin-type actin-binding protein
211331115733714-3-3 protein
22122211Alkaline phosphatase
111333211117Zinc carboxypeptidase
332624381106060474333474Aldo/keto reductase family
1014149714661115106Myb-like DNA-binding domain
5556116966564Forkhead domain
3111118Glycosyl hydrolases family 32 N-terminal domain
211321221116Ribosomal protein L16p/L10e
222222322221Ribosomal protein S14p/S29e
356433343539FKBP-type peptidyl-prolyl cis-trans isomerase
121111111111Glutathione peroxidase
221117
11Dehydrin
3455117757458Flavodoxin
22Tropomyosin
111111111110Calreticulin family
123772325Common central domain of tyrosinase
10669147878984Aminotransferase class-V
1712202285250Ribonucleotide reductase, small chain
726680531556072636062743DEAD/DEAH box helicase
9693115821739893106991031,058Helicase conserved C-terminal domain
111115Fructose-bisphosphate aldolase class-I
111151111114EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
232222223222Ribosomal protein L23
111122311114Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11111123112Ribosomal protein L5
854466786357Pyridoxal-dependent decarboxylase conserved domain
433543543337Citrate synthase, C-terminal domain
556565655553GHMP kinases N terminal domain
756796666664Biotin carboxylase, N-terminal domain
111111111110Tryptophan synthase alpha chain
877813101099788Pyridoxal-phosphate dependent enzyme
11'Paired box' domain
14141419171313171515151NUDIX domain
345556666450pfkB family carbohydrate kinase
8369298926192119Glycosyl hydrolases family 28
222242266230Ribosomal protein L3
322222222221Ribosomal protein L11, RNA binding domain
7771211871010887Histidine phosphatase superfamily (branch 1)
111111111110Thymidylate synthase
2114Lipoxygenase
444454554544ATP synthase alpha/beta chain, C terminal domain
345667744450Calponin homology (CH) domain
355235235841Glutamine amidotransferases class-II
222222222220Ribosomal protein S15
8233276942165Thaumatin family
111111111110Fructose-1-6-bisphosphatase, N-terminal domain
211165611125Ribonucleotide reductase, all-alpha domain
222222232221Ribosomal protein S2
243433422532SRF-type transcription factor (DNA-binding and dimerisation domain)
10121211522731101210187GATA zinc finger
132423131324961519159Amino acid permease
123Bacterial regulatory proteins, crp family
85871481166679Prolyl oligopeptidase family
211221222116Ribosomal protein L30p/L7e
14989141311986101Histidine phosphatase superfamily (branch 2)
111111111110Respiratory-chain NADH dehydrogenase, 30 Kd subunit
458455644449Aconitase family (aconitate hydratase)
6810541135Glycosyl hydrolase family 10
423312211322Glycosyl hydrolases family 17
222222122219Ribosomal protein S5, N-terminal domain
222222212219Nucleoside diphosphate kinase
633465662344Tetraspanin family
522110Galactoside-binding lectin
222222222119Ribosomal protein S10p/S20e
5483209587271Arrestin (or S-antigen), N-terminal domain
111111111110Phosphoglucose isomerase
111141211215Carbohydrate phosphorylase
211111211112SecY translocase
125311111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222122219Ribosomal protein L6
4686133345557Polyprenyl synthetase
222242352226Hexokinase
15881021591177101Dynamin family
112212111113Transcription factor TFIID (or TATA-binding protein, TBP)
345354334438Rieske [2Fe-2S] domain
112116Phytochrome region
314Proton-conducting membrane transporter
88891088981086Biotin-requiring enzyme
111111111110Phosphofructokinase
222222233222Ribosomal protein S17
122121134118Hydroxymethylglutaryl-coenzyme A reductase
332333334330FGGY family of carbohydrate kinases, N-terminal domain
688817911109995Enoyl-CoA hydratase/isomerase
222222222220Ribosomal protein S9/S16
223222223222Transcription factor TFIIB repeat
677588898672Cytidine and deoxycytidylate deaminase zinc-binding region
111111111110Molybdopterin oxidoreductase
882171917771269175Chromo (CHRromatin Organisation MOdifier) domain
354333322230Phosphatidylinositol-specific phospholipase C, Y domain
554573432240Phosphatidylinositol-specific phospholipase C, X domain
744787566761D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
356322222229Malic enzyme, N-terminal domain
1111111111106-phosphogluconate dehydrogenase, C-terminal domain
1591322381112101017157Multicopper oxidase
8888101091010990WW domain
222222222220Ribosomal RNA adenine dimethylase
1382312211311821251331791951381,673WD domain, G-beta repeat
443342233533Heavy-metal-associated domain
633333333333Adenylate kinase
222332322223Phosphoglucomutase/phosphomannomutase, C-terminal domain
211221321116Ribosomal protein S8
222223322222Ribosomal protein S11
667666655659LIM domain
6410Matrixin
333463375340Regulator of chromosome condensation (RCC1) repeat
222222222220Ribosomal protein S13/S18
22NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
222322222221chorismate binding enzyme
34423454834060s Acidic ribosomal protein
446455647449Prenyltransferase and squalene oxidase repeat
566468577761Protein kinase C terminal domain
111111111110Single-strand binding protein family
111111111110S-adenosylmethionine synthetase, N-terminal domain
14111011241110121110124Bromodomain
118811131113121211110Acyl-CoA dehydrogenase, C-terminal domain
16201616192120151614173Ubiquitin carboxyl-terminal hydrolase
111111118Ribosomal protein L36
233211552235Ribonuclease T2 family
454374479451HSF-type DNA-binding
222222222220SRP54-type protein, GTPase domain
111311122215Urease alpha-subunit, N-terminal domain
177712442328131610177Serine carboxypeptidase
88889991010887Phosphatidylinositol 3- and 4-kinase
222322211219Transketolase, thiamine diphosphate binding domain
295622Glycosyl hydrolases family 11
111111118WHEP-TRS domain
242332222224Inositol monophosphatase family
355474744750Glutaredoxin
222225223426Isocitrate lyase family
111111211111Serine hydroxymethyltransferase
222374533233Iron-containing alcohol dehydrogenase
222232222120Ribosomal protein L10
1108555657557KOW motif
111111111110Ribosomal protein L34
11114Ribosomal protein L33
312332344227RF-1 domain
12213421319Sodium:solute symporter family
111111112111Imidazoleglycerol-phosphate dehydratase
1111111119DNA polymerase family A
211111111111IMP dehydrogenase / GMP reductase domain
111122211113Glucose-6-phosphate dehydrogenase, NAD binding domain
141291014161615139128Protein phosphatase 2C
333332338334Nucleotidyl transferase
6477123333351Carbonic anhydrase
111111111110Phosphoribulokinase / Uridine kinase family
28981616131510812135Fatty acid desaturase
666666766863MutS domain V
111111111110Delta-aminolevulinic acid dehydratase
322654445439Arginase family
5666967126871MCM P-loop domain
212231232220Squalene/phytoene synthase
911111028161715139139FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
432029511134349332730438AMP-binding enzyme
32184925682929201715302G-protein alpha subunit
15191617252120141816181HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
112Cytochrome c oxidase subunit III
544614661211573His Kinase A (phospho-acceptor) domain
322255545437Armadillo/beta-catenin-like repeat
18517319243016216532349Tetratricopeptide repeat
422363533334Ion transport protein
111111111110DNA gyrase/topoisomerase IV, subunit A
11VPR/VPX protein
61112610129691293BRCA1 C Terminus (BRCT) domain
5674168767773Glycosyl transferases group 1
233244345333Glycosyl transferase family 2
2112221213SAM domain (Sterile alpha motif)
244445333436linker histone H1 and H5 family
1111111119Ribosomal protein L7/L12 C-terminal domain
1871118Pectate lyase
12311351118ribonuclease
111311111213Urease, gamma subunit
333344533334CoA-ligase
765163181113106113Phosphopantetheine attachment site
232221223221Formyl transferase
121091716101112108115Metallopeptidase family M24
6171611233161387Leucine Rich Repeat
1625201149531963730266alpha/beta hydrolase fold
333342333330RNA polymerase Rpb2, domain 6
7575114554558PB1 domain
222222222220Staphylococcal nuclease homologue
1310111214101312109114Rab-GTPase-TBC domain
211111111111Tudor domain
212221211216WH1 domain
544763466550Zinc finger, ZZ type
1111111119HRDC domain
599611108610983CBS domain
222222232221Ribosomal protein L13
222232222221Ribosomal protein L4/L1 family
111111111110Clp protease
434444344337S1 RNA binding domain
111111111110HIUase/Transthyretin family
544455644445AhpC/TSA family
474444444544tRNA synthetases class I (W and Y)
11113121112UvrD/REP helicase N-terminal domain
74478410104361Rhodanese-like domain
242222222222Universal stress protein family
21202827703825233825315Acetyltransferase (GNAT) family
111111111110SecE/Sec61-gamma subunits of protein translocation complex
111111111110C-terminal regulatory domain of Threonine dehydratase
222222222220AIR synthase related protein, N-terminal domain
5665126457763tRNA synthetase class II core domain (G, H, P, S and T)
213Phage integrase family
225232222325Tetrapyrrole (Corrin/Porphyrin) Methylases
111111111110Glycosyl transferase family, a/b domain
11PDZ domain
1112144432335Class II Aldolase and Adducin N-terminal domain
343544353640Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
678765655661Fes/CIP4, and EFC/F-BAR homology domain
245235336235IQ calmodulin-binding motif
222222222220Phosphoinositide 3-kinase family, accessory domain (PIK domain)
144224234430Phospholipase D Active site motif
211441331121Regulator of G protein signaling domain
444444455442GTPase-activator protein for Ras-like GTPase
887615771114689RasGEF domain
69851077812779RasGEF N-terminal motif
12131311161311181712136RhoGAP domain
16161614231416181614163RhoGEF domain
344434544439SPRY domain
753353346342RNA polymerase Rpb1, domain 2
11111122111Guanylate kinase
244345543337Gelsolin repeat
781065955121077UBA/TS-N domain
11191815152018181927180PHD-finger
3221222115GGL domain
5555955551160HECT-domain (ubiquitin-transferase)
12211112112Helix-hairpin-helix motif
122111144118MSP (Major sperm protein) domain
497335345649Ribonuclease III domain
422492472238Region in Clathrin and VPS
443454443439RanBP1 domain
522213336330PPIC-type PPIASE domain
2252422423Zn-finger in Ran binding protein and others
11293013152521132325205Zinc finger C-x8-C-x5-C-x3-H type (and similar)
111414