PFAM Domains • Coprinopsis marcescibilis CBS121175 v1.0
Annotations/GenomesAmath1Copci1Copci_AmutBmut1Copmar1Copmic2PleosPC9_1TotalAnnotation Description
PFAMs
7,0667,6787,7208,1169,3257,91447,819
117 transmembrane receptor (rhodopsin family)
394344454846265ATPase family associated with various cellular activities (AAA)
314645475737263ABC transporter
44444424ATP synthase alpha/beta family, nucleotide-binding domain
14151515161489Elongation factor Tu GTP binding domain
10101111141066Helix-loop-helix DNA-binding domain
877123643Hsp20/alpha crystallin family
788826966Hsp70 protein
88798848KH domain
11Kunitz/Bovine pancreatic trypsin inhibitor domain
11Ribulose bisphosphate carboxylase large chain, catalytic domain
111115SH2 domain
243130313229177SH3 domain
11121211131170Actin
2293801968922502Ankyrin repeat
788810849ADP-ribosylation factor family
15131315132392Eukaryotic aspartyl protease
33333318Cyclic nucleotide-binding domain
11Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
1111116Cytochrome c
86678641Double-stranded RNA binding motif
181919192320118EF hand
12111174Fe-4S binding domain
1111217Fibronectin type III domain
1614131113774Glutathione S-transferase, C-terminal domain
13322213Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
11Hemopexin
910101018966Homeodomain
22222111Laminin EGF domain
22223314lactate/malate dehydrogenase, NAD binding domain
45547530Myosin head (motor domain)
74134134155173148818Cytochrome P450
132136136175199158936Protein kinase domain
151717162221108Pyridine nucleotide-disulphide oxidoreductase
233234273426176Ras family
888881151Response regulator receiver domain
3228301560RNase H
696468718067419RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
134Reverse transcriptase (RNA-dependent DNA polymerase)
12122118Copper/zinc superoxide dismutase (SODC)
22222212Iron/manganese superoxide dismutases, alpha-hairpin domain
1712122226998Subtilase family
232021192631140Sugar (and other) transporter
109911101463Thioredoxin
55556632Tubulin/FtsZ family, GTPase domain
23436523von Willebrand factor type A domain
436067527956357Zinc finger, C2H2 type
524855616859343Zinc finger, C3HC4 type (RING finger)
2352118191828339Zinc knuckle
22222212Protein-tyrosine phosphatase
444948616177340short chain dehydrogenase
312929324241204Zinc-binding dehydrogenase
44446426Thiolase, N-terminal domain
42336220Beta-ketoacyl synthase, N-terminal domain
333333182Fe-2S iron-sulfur cluster binding domain
1112218Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
988810851Glutamine amidotransferase class-I
12101124121079TCP-1/cpn60 chaperonin family
11ATP synthase A chain
54433322Glutamine synthetase, catalytic domain
1111116Triosephosphate isomerase
9111112111367E1-E2 ATPase
151616172018102Core histone H2A/H2B/H3/H4
1124Copper binding proteins, plastocyanin/azurin family
88977948Alpha amylase, catalytic domain
56665331Phorbol esters/diacylglycerol binding domain (C1 domain)
45547530Bacterial transferase hexapeptide (six repeats)
33333318tRNA synthetases class I (I, L, M and V)
11121210181174Cyclin, N-terminal domain
221919272828143Carboxylesterase family
44445425DNA polymerase family B
33333318ATP synthase subunit C
2441061036Peroxidase
1522711340Beta-lactamase
34554526C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
223131293027170Calcineurin-like phosphoesterase
9111213161374Cellulase (glycosyl hydrolase family 5)
55556531tRNA synthetases class II (D, K and N)
363636373835218Mitochondrial carrier protein
15161717191397Aminotransferase class I and II
66677739Phosphoribosyl transferase domain
12141412121175Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11Ribosome inactivating protein
1111116Phosphoglycerate kinase
22222212Ribosomal protein S4/S9 N-terminal domain
22222212Ribosomal protein S12/S23
1111116Chaperonin 10 Kd subunit
16171615141896C2 domain
181919191516106PH domain
66755635bZIP transcription factor
13121216131884Aldehyde dehydrogenase family
514248616341306Fungal Zn(2)-Cys(6) binuclear cluster domain
232424232322139Cytochrome b5-like Heme/Steroid binding domain
12223212Oxidoreductase molybdopterin binding domain
71010913756Oxidoreductase NAD-binding domain
212625283525160SNF2 family N-terminal domain
22223213Ribosomal protein S7p/S5e
202323212321131Ubiquitin-conjugating enzyme
65555531Isocitrate/isopropylmalate dehydrogenase
22222212Ribosomal Proteins L2, RNA binding domain
22223213Hsp90 protein
22222212Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111116Dihydrofolate reductase
11Chitin recognition protein
62225522Cysteine-rich secretory protein family
1111116Ribosomal protein S3, C-terminal domain
11226Cupin
13316115Annexin
333553222-oxoacid dehydrogenases acyltransferase (catalytic domain)
14455221Catalase
1111217Disintegrin
55656532Aminotransferase class-III
22222212Ribosomal protein S19
1111116DNA gyrase B
34444524Thiamine pyrophosphate enzyme, central domain
33335320Lyase
22223112Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1111116Adenylate and Guanylate cyclase catalytic domain
1111116ATP synthase delta (OSCP) subunit
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
22242113Indole-3-glycerol phosphate synthase
11Neurohypophysial hormones, N-terminal Domain
22222212Aromatic amino acid lyase
1111116Pyruvate kinase, barrel domain
98999953Kinesin motor domain
283230323732191DnaJ domain
14141415171488Proteasome subunit
52124721Major intrinsic protein
1121117ATP synthase
32223315Glycosyl hydrolase family 1
11112173'5'-cyclic nucleotide phosphodiesterase
1111116Profilin
2111117Ribosomal protein L22p/L17e
22223213Ribosomal protein L14p/L23e
141716202417108Ubiquitin family
55555530Cofilin/tropomyosin-type actin-binding protein
2222321314-3-3 protein
52222518Alkaline phosphatase
111115Zinc carboxypeptidase
222222373946188Aldo/keto reductase family
11131313151378Myb-like DNA-binding domain
55559534Forkhead domain
11Glycosyl hydrolases family 32 N-terminal domain
1111127Ribosomal protein L16p/L10e
22222212Ribosomal protein S14p/S29e
33346827FKBP-type peptidyl-prolyl cis-trans isomerase
111115Glutathione peroxidase
12222211
566610639Flavodoxin
11Protamine P1
1111116Calreticulin family
119181321476Common central domain of tyrosinase
877791048Aminotransferase class-V
22247219Ribonucleotide reductase, small chain
435151476356311DEAD/DEAH box helicase
7092899012689556Helicase conserved C-terminal domain
112Fructose-bisphosphate aldolase class-I
111115EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22223213Ribosomal protein L23
1111116Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1111116Ribosomal protein L5
25545526Pyridoxal-dependent decarboxylase conserved domain
35434322Citrate synthase, C-terminal domain
54445527GHMP kinases N terminal domain
76666738Biotin carboxylase, N-terminal domain
2111117Tryptophan synthase alpha chain
77787743Pyridoxal-phosphate dependent enzyme
141717171817100NUDIX domain
54457530pfkB family carbohydrate kinase
53338628Glycosyl hydrolases family 28
22222212Ribosomal protein L3
22222212Ribosomal protein L11, RNA binding domain
877981049Histidine phosphatase superfamily (branch 1)
1111116Thymidylate synthase
639Lipoxygenase
44444424ATP synthase alpha/beta chain, C terminal domain
54444425Calponin homology (CH) domain
54445527Glutamine amidotransferases class-II
22223213Ribosomal protein S15
25567328Thaumatin family
1111116Fructose-1-6-bisphosphatase, N-terminal domain
1112218Ribonucleotide reductase, all-alpha domain
22222212Ribosomal protein S2
41222213SRF-type transcription factor (DNA-binding and dimerisation domain)
1111111015866GATA zinc finger
161314201919101Amino acid permease
11Bacterial regulatory proteins, crp family
45565833Prolyl oligopeptidase family
1111318Ribosomal protein L30p/L7e
7556101144Histidine phosphatase superfamily (branch 2)
1111217Respiratory-chain NADH dehydrogenase, 30 Kd subunit
44444424Aconitase family (aconitate hydratase)
46658332Glycosyl hydrolase family 10
53339124Glycosyl hydrolases family 17
22222212Ribosomal protein S5, N-terminal domain
22122211Nucleoside diphosphate kinase
13312313Tetraspanin family
123814Galactoside-binding lectin
22222212Ribosomal protein S10p/S20e
13367424Arrestin (or S-antigen), N-terminal domain
1211117Phosphoglucose isomerase
1111217Carbohydrate phosphorylase
1111239SecY translocase
111216Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222212Ribosomal protein L6
54445426Polyprenyl synthetase
22222212Hexokinase
74455631Dynamin family
1111116Transcription factor TFIID (or TATA-binding protein, TBP)
34443220Rieske [2Fe-2S] domain
44Proton-conducting membrane transporter
999911956Biotin-requiring enzyme
1111116Phosphofructokinase
22222212Ribosomal protein S17
11119114Hydroxymethylglutaryl-coenzyme A reductase
43334320FGGY family of carbohydrate kinases, N-terminal domain
1078891052Enoyl-CoA hydratase/isomerase
22223213Ribosomal protein S9/S16
33332216Transcription factor TFIIB repeat
55556733Cytidine and deoxycytidylate deaminase zinc-binding region
1111116Molybdopterin oxidoreductase
1778761459Chromo (CHRromatin Organisation MOdifier) domain
33333318Phosphatidylinositol-specific phospholipase C, Y domain
33334420Phosphatidylinositol-specific phospholipase C, X domain
46666533D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
22333316Malic enzyme, N-terminal domain
11111276-phosphogluconate dehydrogenase, C-terminal domain
14171720191198Multicopper oxidase
1012121010761WW domain
22221211Ribosomal RNA adenine dimethylase
117124125142150134792WD domain, G-beta repeat
32222415Heavy-metal-associated domain
33333318Adenylate kinase
12212210Phosphoglucomutase/phosphomannomutase, C-terminal domain
22221110Ribosomal protein S8
22222212Ribosomal protein S11
65667434LIM domain
11Matrixin
33331316Regulator of chromosome condensation (RCC1) repeat
22222212Ribosomal protein S13/S18
22222212chorismate binding enzyme
3333331860s Acidic ribosomal protein
44445526Prenyltransferase and squalene oxidase repeat
77777641Protein kinase C terminal domain
1111318Single-strand binding protein family
1111116S-adenosylmethionine synthetase, N-terminal domain
10111110151067Bromodomain
11999101058Acyl-CoA dehydrogenase, C-terminal domain
15151514181693Ubiquitin carboxyl-terminal hydrolase
1113Ribosomal protein L36
347Ribonuclease T2 family
11Gonadotropin-releasing hormone
43445626HSF-type DNA-binding
22222212SRP54-type protein, GTPase domain
1111217Urease alpha-subunit, N-terminal domain
15545101352Serine carboxypeptidase
888710849Phosphatidylinositol 3- and 4-kinase
22224214Transketolase, thiamine diphosphate binding domain
6736224Glycosyl hydrolases family 11
111115WHEP-TRS domain
32223214Inositol monophosphatase family
54544527Glutaredoxin
53334725Isocitrate lyase family
1111116Serine hydroxymethyltransferase
22222212Iron-containing alcohol dehydrogenase
21122210Ribosomal protein L10
54444526KOW motif
1111116Ribosomal protein L34
13325317RF-1 domain
111137Sodium:solute symporter family
1111116Imidazoleglycerol-phosphate dehydratase
1111217DNA polymerase family A
1111116IMP dehydrogenase / GMP reductase domain
1111116Glucose-6-phosphate dehydrogenase, NAD binding domain
6881010951Protein phosphatase 2C
11123311Nucleotidyl transferase
57797843Carbonic anhydrase
1111116Phosphoribulokinase / Uridine kinase family
98812101158Fatty acid desaturase
66667637MutS domain V
1111116Delta-aminolevulinic acid dehydratase
22212514Arginase family
66666636MCM P-loop domain
1111127Squalene/phytoene synthase
988981052FHA domain
112NADH-ubiquinone/plastoquinone oxidoreductase chain 6
263031282634175AMP-binding enzyme
13161617191495G-protein alpha subunit
162626242417133HMG (high mobility group) box
11Cytochrome c oxidase subunit III
54456529His Kinase A (phospho-acceptor) domain
22225215Armadillo/beta-catenin-like repeat
272928924019235Tetratricopeptide repeat
43334219Ion transport protein
1211117DNA gyrase/topoisomerase IV, subunit A
9101212141168BRCA1 C Terminus (BRCT) domain
66666636Glycosyl transferases group 1
44437325Glycosyl transferase family 2
13311211SAM domain (Sterile alpha motif)
14445321linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
1111812Pectate lyase
1168ribonuclease
1111217Urease, gamma subunit
33334319CoA-ligase
46646632Phosphopantetheine attachment site
22222313Formyl transferase
99910101057Metallopeptidase family M24
14151515131688Leucine Rich Repeat
313435355746238alpha/beta hydrolase fold
33333318RNA polymerase Rpb2, domain 6
45555428PB1 domain
22223213Staphylococcal nuclease homologue
1099911957Rab-GTPase-TBC domain
1111116Tudor domain
1111127WH1 domain
24454322Zinc finger, ZZ type
11114HRDC domain
91111109757CBS domain
22223213Ribosomal protein L13
22222212Ribosomal protein L4/L1 family
1111116Clp protease
46555328S1 RNA binding domain
1111116HIUase/Transthyretin family
34444524AhpC/TSA family
44445425tRNA synthetases class I (W and Y)
1112218UvrD/REP helicase N-terminal domain
44544425Rhodanese-like domain
22222212Universal stress protein family
232830344727189Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
1111116C-terminal regulatory domain of Threonine dehydratase
22223213AIR synthase related protein, N-terminal domain
67766638tRNA synthetase class II core domain (G, H, P, S and T)
112Phage integrase family
22233214Tetrapyrrole (Corrin/Porphyrin) Methylases
1111116Glycosyl transferase family, a/b domain
12222110Class II Aldolase and Adducin N-terminal domain
42224317Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
55567533Fes/CIP4, and EFC/F-BAR homology domain
34437526IQ calmodulin-binding motif
22222212Phosphoinositide 3-kinase family, accessory domain (PIK domain)
33333318Phospholipase D Active site motif
1111127Regulator of G protein signaling domain
44444525GTPase-activator protein for Ras-like GTPase
710111010957RasGEF domain
79101010854RasGEF N-terminal motif
13121112141274RhoGAP domain
14141414161385RhoGEF domain
44444424SPRY domain
33338525RNA polymerase Rpb1, domain 2
1111116Guanylate kinase
34444322Gelsolin repeat
911101010858UBA/TS-N domain
171818211914107PHD-finger
2222210GGL domain
55557532HECT-domain (ubiquitin-transferase)
32112312Helix-hairpin-helix motif
13411313MSP (Major sperm protein) domain
96656739Ribonuclease III domain
22223213Region in Clathrin and VPS
33333318RanBP1 domain
22222212PPIC-type PPIASE domain
24333116Zn-finger in Ran binding protein and others
212220233721144Zinc finger C-x8-C-x5-C-x3-H type (and similar)
1111116B-box zinc finger
35767230Poly(ADP-ribose) polymerase catalytic domain
22222111Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
591972011403081091,014F-box domain
1111116Elongation factor 1 gamma, conserved domain
19868133Calpain family cysteine protease
22223213Copper fist DNA binding domain
77776640CRAL/TRIO domain
10191913231094BTB/POZ domain
5171718142293Ricin-type beta-trefoil lectin domain
1111116Inhibitor of Apoptosis domain
33333217Voltage gated chloride channel
4151520221288Caspase domain
6101011201168GDSL-like Lipase/Acylhydrolase
1111116Poly-adenylate binding protein, unique domain
1111116POLO box duplicated region
11NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
132321232415119ABC transporter transmembrane region
1113Integrase core domain
33334420FAD binding domain
12222211Condensation domain
1111116S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1211139HAMP domain
22222212ribosomal L5P family C-terminus
55555429Insulinase (Peptidase family M16)
44444323Dehydrogenase E1 component
1111116Lumazine binding domain
67778742Elongation factor G C-terminus
54445426HMGL-like
44444323DnaJ central domain
23311313Starch binding domain
22222111Ribosomal protein L1p/L10e family
46666735Cation transporting ATPase, C-terminus
58898846Cation transporter/ATPase, N-terminus
1111116dUTPase
44444424Aconitase C-terminal domain
34433522Amino acid kinase family
1221118N-(5'phosphoribosyl)anthranilate (PRA) isomerase
23336320Acyl transferase domain
1111217Urease beta subunit
22222212Dihydrodipicolinate synthetase family
252425272730158haloacid dehalogenase-like hydrolase
11123210Glycosyl hydrolases family 2
16999101265Glycosyl hydrolases family 18
1111217Proliferating cell nuclear antigen, N-terminal domain
1111116Adenylosuccinate synthetase
1111116Asparaginase, N-terminal
31343317Peptidase S24-like
111115Inorganic pyrophosphatase
76656535Glycosyl hydrolases family 16
24523319Glycosyl hydrolases family 15
6668131352NADH:flavin oxidoreductase / NADH oxidase family
11111163-hydroxyacyl-CoA dehydrogenase, C-terminal domain
32222213Glycosyl hydrolase family 20, catalytic domain
44435525HhH-GPD superfamily base excision DNA repair protein
1111116AIR carboxylase
123436324243199GMC oxidoreductase
22222212Asparagine synthase
104444555235240Fungal cellulose binding domain
77778642Septin
1111116EF-1 guanine nucleotide exchange domain
1111116Homoserine dehydrogenase
72236424Flavin-binding monooxygenase-like
11LPXTG cell wall anchor motif
33333318tRNA synthetases class I (E and Q), catalytic domain
1111127tRNA synthetases class I (R)
55465732XPG N-terminal domain
9101111101162Metallo-beta-lactamase superfamily
112F5/8 type C domain
44444424Choline/Carnitine o-acyltransferase
1111116Putative esterase
1111116Glycosyl hydrolase family 9
1111116Ferrochelatase
42222416Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1111116Arginosuccinate synthase
1111116Electron transfer flavoprotein FAD-binding domain
33333318RNB domain
42334319Dioxygenase
54445325CNH domain
12222211Diacylglycerol kinase catalytic domain
14121212141276Dual specificity phosphatase, catalytic domain
1111116MyTH4 domain
44455426P21-Rho-binding domain
14141415171286PX domain
23333216Ras association (RalGDS/AF-6) domain
44445324UBX domain
54455528VHS domain
1111116Phosphoinositide 3-kinase C2
22222212DAHP synthetase I family
23333519Carbon-nitrogen hydrolase
32222112N-acetyltransferase
1111116Prephenate dehydratase
55553528Syntaxin
56666635Pumilio-family RNA binding repeat
66667637Histone-like transcription factor (CBF/NF-Y) and archaeal histone
1111116Pterin binding enzyme
1111217ER lumen protein retaining receptor
22222212Glycoprotease family
1111116Histidinol dehydrogenase
43333319impB/mucB/samB family
1111116
1111116Ribosomal L15
1111116Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
1111116Ribosomal prokaryotic L21 protein
1111116Ribosomal L28 family
1111116Ribosomal L29 protein
1111116Ribosomal L39 protein
1111116Ribosomal S17
1111116Ribulose-phosphate 3 epimerase family
1111116Translationally controlled tumour protein
265591643Glycosyl hydrolase family 7
22222212RNA pseudouridylate synthase
66668638Histone deacetylase domain
22225215POT family
22221211PWWP domain
151818181617102SET domain
354104329Isochorismatase family
22222212Permease family
1111116Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
597611644XPG I-region
1111116Acetokinase family
1111116DNA photolyase
111216Cation-independent mannose-6-phosphate receptor repeat
22116Nitroreductase family
1111116Cytosol aminopeptidase family, catalytic domain
112Sulfatase
11111166,7-dimethyl-8-ribityllumazine synthase
1111217Ribosomal protein S16
33332216Acyl CoA binding protein
56676535Cullin family
1111116Elongation factor TS
33222517FAD binding domain
422221628O-methyltransferase domain
46675331EamA-like transporter family
22223213
77778743ThiF family
1111116Ribosomal family S4e
13334115Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
24333318Ammonium Transporter Family
33333318Sulfate permease family
1222119MATH domain
22222212Dehydratase family
13332416Transaldolase/Fructose-6-phosphate aldolase
33333318Mechanosensitive ion channel
1111116GTP cyclohydrolase II
11111163,4-dihydroxy-2-butanone 4-phosphate synthase
44445425Adaptor complexes medium subunit family
888881050Exonuclease
1111217Dipeptidyl peptidase IV (DPP IV) N-terminal region
977581248Glycosyl hydrolase family 3 N terminal domain
111115Ribosomal protein L44
1111318DNA-dependent RNA polymerase
1111116Glycosyl transferase family 4
1111116HCO3- transporter family
22222111Nucleosome assembly protein (NAP)
44446426Synaptobrevin
1111217GMP synthase C terminal domain
36653326Phage lysozyme
33322316Adenosine/AMP deaminase
34444322Oxidoreductase FAD-binding domain
111216Thioesterase domain
22222212Histidine biosynthesis protein
33333318Glycosyltransferase family 20
1111116UDP-glucose/GDP-mannose dehydrogenase family, central domain
22222212Carbamoyl-phosphate synthase small chain, CPSase domain
1124PAS fold
22224214Probable molybdopterin binding domain
44445425Sec1 family
22222212GDP dissociation inhibitor
67788743Sodium/hydrogen exchanger family
22222313RNA polymerase Rpb3/RpoA insert domain
44444323Initiation factor 2 subunit family
2215PQQ enzyme repeat
22223213Electron transfer flavoprotein domain
1111116Uricase
1111116Ribosomal S3Ae family
1111116Ribosomal L27 protein
1111116GTP1/OBG
22224214Gamma-glutamyltranspeptidase
112Ribosomal L40e family
1111116GrpE
33326320TatD related DNase
1