PFAM Domains • Botryosphaeria dothidea
Annotations/GenomesAplpr1Botdo1_1Macph1Neopa1Phycit1Sacpr1TotalAnnotation Description
PFAMs
8,19810,8909,4228,5057,2837,32351,621
22157 transmembrane receptor (rhodopsin family)
526350464139291ATPase family associated with various cellular activities (AAA)
425754442933259ABC transporter
44544425ATP synthase alpha/beta family, nucleotide-binding domain
11EGF-like domain
14141414141484Elongation factor Tu GTP binding domain
1012167101065Helix-loop-helix DNA-binding domain
23433217Hsp20/alpha crystallin family
77777742Hsp70 protein
89999953KH domain
1111116SH2 domain
232221182222128SH3 domain
1010119101060Actin
10213562313521386Ankyrin repeat
7531117PAN domain
77677741ADP-ribosylation factor family
12172018121695Eukaryotic aspartyl protease
44334422Cyclic nucleotide-binding domain
11Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
1111217Cytochrome c
113229Double-stranded RNA binding motif
202119201919118EF hand
12221194Fe-4S binding domain
12122210Fibronectin type III domain
11114Globin
14211716121191Glutathione S-transferase, C-terminal domain
1112117Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
613956746Homeodomain
22222212lactate/malate dehydrogenase, NAD binding domain
11114Low-density lipoprotein receptor repeat class B
11Lectin C-type domain
45554427Myosin head (motor domain)
902592271996865908Cytochrome P450
1061391069297105645Protein kinase domain
13181721111292Pyridine nucleotide-disulphide oxidoreductase
232422202222133Ras family
182622111819114Response regulator receiver domain
492044243RNase H
666258546359362RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
67114Reverse transcriptase (RNA-dependent DNA polymerase)
22222212Copper/zinc superoxide dismutase (SODC)
22212211Iron/manganese superoxide dismutases, alpha-hairpin domain
51611117757Subtilase family
5611191995150458Sugar (and other) transporter
9999101056Thioredoxin
1211117Trypsin
45554427Tubulin/FtsZ family, GTPase domain
45324220von Willebrand factor type A domain
587253415153328Zinc finger, C2H2 type
535440304342262Zinc finger, C3HC4 type (RING finger)
6916115350Zinc knuckle
22212211Protein-tyrosine phosphatase
1222011671588497829short chain dehydrogenase
5611694894748450Zinc-binding dehydrogenase
56665533Thiolase, N-terminal domain
2036442988145Beta-ketoacyl synthase, N-terminal domain
666455322Fe-2S iron-sulfur cluster binding domain
1111116Enolase, C-terminal TIM barrel domain
33Cytochrome C and Quinol oxidase polypeptide I
22Cytochrome C oxidase subunit II, periplasmic domain
89978950Glutamine amidotransferase class-I
10101010101060TCP-1/cpn60 chaperonin family
22ATP synthase A chain
24322215Glutamine synthetase, catalytic domain
22222212Triosephosphate isomerase
14181916131292E1-E2 ATPase
87888847Core histone H2A/H2B/H3/H4
112Copper binding proteins, plastocyanin/azurin family
48983436Alpha amylase, catalytic domain
22222111Phorbol esters/diacylglycerol binding domain (C1 domain)
71310107754Bacterial transferase hexapeptide (six repeats)
33333318tRNA synthetases class I (I, L, M and V)
76658638Cyclin, N-terminal domain
245147442423213Carboxylesterase family
44445425DNA polymerase family B
54444425ATP synthase subunit C
79994442Peroxidase
101613156464Beta-lactamase
3333315C-5 cytosine-specific DNA methylase
112NADH dehydrogenase
232324202321134Calcineurin-like phosphoesterase
1114111291168Cellulase (glycosyl hydrolase family 5)
77777742tRNA synthetases class II (D, K and N)
353835383837221Mitochondrial carrier protein
1113recA bacterial DNA recombination protein
202618171415110Aminotransferase class I and II
98888849Phosphoribosyl transferase domain
10101010101060Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1121117Phosphoglycerate kinase
22222212Ribosomal protein S4/S9 N-terminal domain
22222212Ribosomal protein S12/S23
11Bacterial regulatory helix-turn-helix proteins, AraC family
1111116Chaperonin 10 Kd subunit
9111110111163C2 domain
181920181818111PH domain
10171488764bZIP transcription factor
192723271313122Aldehyde dehydrogenase family
15921011610212095802Fungal Zn(2)-Cys(6) binuclear cluster domain
202721241923134Cytochrome b5-like Heme/Steroid binding domain
36561425Oxidoreductase molybdopterin binding domain
15221716121597Oxidoreductase NAD-binding domain
263127202525154SNF2 family N-terminal domain
22222212Ribosomal protein S7p/S5e
222020212223128Ubiquitin-conjugating enzyme
77876641Isocitrate/isopropylmalate dehydrogenase
22222212Ribosomal Proteins L2, RNA binding domain
1111116Hsp90 protein
22222212Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111116Dihydrofolate reductase
68545331Chitin recognition protein
35563224Cysteine-rich secretory protein family
1111116Ribosomal protein S3, C-terminal domain
15443320Cupin
22222212Annexin
23218Eukaryotic-type carbonic anhydrase
11Chalcone and stilbene synthases, N-terminal domain
344433212-oxoacid dehydrogenases acyltransferase (catalytic domain)
44533423Catalase
111115Disintegrin
1135UDP-glucoronosyl and UDP-glucosyl transferase
710798546Aminotransferase class-III
22222212Ribosomal protein S19
1111116DNA gyrase B
78785540Thiamine pyrophosphate enzyme, central domain
45444324Lyase
22222212Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
112Sodium:neurotransmitter symporter family
1111116Adenylate and Guanylate cyclase catalytic domain
1111116ATP synthase delta (OSCP) subunit
22221110Orotidine 5'-phosphate decarboxylase / HUMPS family
1111116Indole-3-glycerol phosphate synthase
1112117Aromatic amino acid lyase
1111116Pyruvate kinase, barrel domain
1011101010960Kinesin motor domain
292721242631158DnaJ domain
15141414141485Proteasome subunit
1014997958Major intrinsic protein
1111116ATP synthase
56654329Glycosyl hydrolase family 1
11111163'5'-cyclic nucleotide phosphodiesterase
1111116Profilin
1121229Ribosomal protein L22p/L17e
21222211Ribosomal protein L14p/L23e
912119121164Ubiquitin family
33444422Cofilin/tropomyosin-type actin-binding protein
2242221414-3-3 protein
35454324Alkaline phosphatase
24541117Zinc carboxypeptidase
213639362020172Aldo/keto reductase family
16171411131384Myb-like DNA-binding domain
44434423Forkhead domain
44542120Glycosyl hydrolases family 32 N-terminal domain
1111116Ribosomal protein L16p/L10e
33112313Ribosomal protein S14p/S29e
44344423FKBP-type peptidyl-prolyl cis-trans isomerase
1111116Glutathione peroxidase
23222112
7127116851Flavodoxin
1111116Calreticulin family
71210113346Common central domain of tyrosinase
711886747Aminotransferase class-V
1111116Ribonucleotide reductase, small chain
414038303939227DEAD/DEAH box helicase
758474657173442Helicase conserved C-terminal domain
1221118EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22222212Ribosomal protein L23
13332214Pyridoxal-dependent decarboxylase, C-terminal sheet domain
12222110Ribosomal protein L5
77685639Pyridoxal-dependent decarboxylase conserved domain
33332317Citrate synthase, C-terminal domain
57455531GHMP kinases N terminal domain
69887745Biotin carboxylase, N-terminal domain
1222119Tryptophan synthase alpha chain
12151310111071Pyridoxal-phosphate dependent enzyme
1416139131277NUDIX domain
44434423pfkB family carbohydrate kinase
998105546Glycosyl hydrolases family 28
111115Luciferase-like monooxygenase
22222212Ribosomal protein L3
22222212Ribosomal protein L11, RNA binding domain
12121111121270Histidine phosphatase superfamily (branch 1)
1111116Thymidylate synthase
11Lipoxygenase
44444424ATP synthase alpha/beta chain, C terminal domain
44544526Calponin homology (CH) domain
56566634Glutamine amidotransferases class-II
22223213Ribosomal protein S15
1111116Thaumatin family
1111116Fructose-1-6-bisphosphatase, N-terminal domain
1111116Ribonucleotide reductase, all-alpha domain
22222212Ribosomal protein S2
23222213SRF-type transcription factor (DNA-binding and dimerisation domain)
99728641GATA zinc finger
375842473131246Amino acid permease
35433321Prolyl oligopeptidase family
22122110Ribosomal protein L30p/L7e
10111010101162Histidine phosphatase superfamily (branch 2)
2111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
56854432Aconitase family (aconitate hydratase)
26551221Glycosyl hydrolase family 10
56774534Glycosyl hydrolases family 17
22222212Ribosomal protein S5, N-terminal domain
111115Nucleoside diphosphate kinase
111115Tetraspanin family
1111116Ribosomal protein S10p/S20e
58655231Arrestin (or S-antigen), N-terminal domain
1111116Phosphoglucose isomerase
1111116Carbohydrate phosphorylase
1111116SecY translocase
1121117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22223213Ribosomal protein L6
491073336Polyprenyl synthetase
45645428Hexokinase
109865543Dynamin family
1111127Transcription factor TFIID (or TATA-binding protein, TBP)
46534426Rieske [2Fe-2S] domain
111115Phytochrome region
415Proton-conducting membrane transporter
811888851Biotin-requiring enzyme
1111116Phosphofructokinase
1111116Ribosomal protein S17
1212118Hydroxymethylglutaryl-coenzyme A reductase
34443321FGGY family of carbohydrate kinases, N-terminal domain
81712128865Enoyl-CoA hydratase/isomerase
22212211Ribosomal protein S9/S16
32222213Transcription factor TFIIB repeat
79767844Cytidine and deoxycytidylate deaminase zinc-binding region
1111116Molybdopterin oxidoreductase
66935433Chromo (CHRromatin Organisation MOdifier) domain
22222212Phosphatidylinositol-specific phospholipase C, Y domain
33333318Phosphatidylinositol-specific phospholipase C, X domain
81711138865D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
22222212Malic enzyme, N-terminal domain
244224186-phosphogluconate dehydrogenase, C-terminal domain
9202221141399Multicopper oxidase
10119991159WW domain
1111116Ribosomal RNA adenine dimethylase
11215Yeast PIR protein repeat
10710610584104102608WD domain, G-beta repeat
47765433Heavy-metal-associated domain
46333322Adenylate kinase
32222213Phosphoglucomutase/phosphomannomutase, C-terminal domain
41111210Ribosomal protein S8
1222119Ribosomal protein S11
44334422LIM domain
1113Matrixin
21212210Regulator of chromosome condensation (RCC1) repeat
22222212Ribosomal protein S13/S18
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
22212211chorismate binding enzyme
3333331860s Acidic ribosomal protein
44444424Prenyltransferase and squalene oxidase repeat
56666534Protein kinase C terminal domain
1111116Single-strand binding protein family
1111116S-adenosylmethionine synthetase, N-terminal domain
77877743Bromodomain
7171413121376Acyl-CoA dehydrogenase, C-terminal domain
15161615161593Ubiquitin carboxyl-terminal hydrolase
11114Ribosomal protein L36
23333317Ribonuclease T2 family
43333319HSF-type DNA-binding
22222212SRP54-type protein, GTPase domain
1111116Urease alpha-subunit, N-terminal domain
9171413111276Serine carboxypeptidase
88888848Phosphatidylinositol 3- and 4-kinase
22222212Transketolase, thiamine diphosphate binding domain
11114Glycosyl hydrolases family 11
45544426Inositol monophosphatase family
44444424Glutaredoxin
67773333Isocitrate lyase family
22222111Serine hydroxymethyltransferase
44444323Iron-containing alcohol dehydrogenase
22222212Ribosomal protein L10
34434220KOW motif
112Ribosomal protein L34
22123313RF-1 domain
36255324Sodium:solute symporter family
1111116Imidazoleglycerol-phosphate dehydratase
1111116DNA polymerase family A
1111116IMP dehydrogenase / GMP reductase domain
1111116Glucose-6-phosphate dehydrogenase, NAD binding domain
56666635Protein phosphatase 2C
33332317Nucleotidyl transferase
13221110Carbonic anhydrase
1111116Phosphoribulokinase / Uridine kinase family
591186645Fatty acid desaturase
66566635MutS domain V
1111116Delta-aminolevulinic acid dehydratase
58644431Arginase family
66676637MCM P-loop domain
22222212Squalene/phytoene synthase
811859647FHA domain
418175623842339AMP-binding enzyme
43333319G-protein alpha subunit
79468842HMG (high mobility group) box
22NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
11Cytochrome c oxidase subunit III
1421176161690His Kinase A (phospho-acceptor) domain
33333318Armadillo/beta-catenin-like repeat
202325202221131Tetratricopeptide repeat
44445526Ion transport protein
1111116DNA gyrase/topoisomerase IV, subunit A
10111210111266BRCA1 C Terminus (BRCT) domain
67965639Glycosyl transferases group 1
44745630Glycosyl transferase family 2
13213313SAM domain (Sterile alpha motif)
1111116linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
66662329Pectate lyase
45641222ribonuclease
1111116Urease, gamma subunit
44444424CoA-ligase
254245301315170Phosphopantetheine attachment site
32122212Formyl transferase
78998849Metallopeptidase family M24
14131311151480Leucine Rich Repeat
337253492735269alpha/beta hydrolase fold
33434320RNA polymerase Rpb2, domain 6
33333318PB1 domain
22222212Staphylococcal nuclease homologue
911129101162Rab-GTPase-TBC domain
1111116Tudor domain
1111116WH1 domain
34443422Zinc finger, ZZ type
2232211HRDC domain
910119101160CBS domain
22222212Ribosomal protein L13
22222212Ribosomal protein L4/L1 family
1111116Clp protease
34443523S1 RNA binding domain
1111116HIUase/Transthyretin family
56456531AhpC/TSA family
46654429tRNA synthetases class I (W and Y)
111227UvrD/REP helicase N-terminal domain
54545528Rhodanese-like domain
22212211Universal stress protein family
344437312222190Acetyltransferase (GNAT) family
211116SecE/Sec61-gamma subunits of protein translocation complex
1111116C-terminal regulatory domain of Threonine dehydratase
22222212AIR synthase related protein, N-terminal domain
88888848tRNA synthetase class II core domain (G, H, P, S and T)
2222210SpoU rRNA Methylase family
22222212Tetrapyrrole (Corrin/Porphyrin) Methylases
22122211Glycosyl transferase family, a/b domain
1111228PDZ domain
67663533Class II Aldolase and Adducin N-terminal domain
34424320Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
55455529Fes/CIP4, and EFC/F-BAR homology domain
54745631IQ calmodulin-binding motif
22222212Phosphoinositide 3-kinase family, accessory domain (PIK domain)
44545426Phospholipase D Active site motif
1111116Regulator of G protein signaling domain
33333318GTPase-activator protein for Ras-like GTPase
44444424RasGEF domain
44433422RasGEF N-terminal motif
98878848RhoGAP domain
56646633RhoGEF domain
22324316SPRY domain
33323317RNA polymerase Rpb1, domain 2
1111116Guanylate kinase
44443423Gelsolin repeat
101111710857UBA/TS-N domain
1714148161887PHD-finger
1111116GGL domain
66656635HECT-domain (ubiquitin-transferase)
23222213Helix-hairpin-helix motif
1111116MSP (Major sperm protein) domain
65644429Ribonuclease III domain
21212210Region in Clathrin and VPS
23322214RanBP1 domain
22222212PPIC-type PPIASE domain
2111218Zn-finger in Ran binding protein and others
20161411161895Zinc finger C-x8-C-x5-C-x3-H type (and similar)
211116Poly(ADP-ribose) polymerase catalytic domain
1111116Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
827544284641316F-box domain
1111116Elongation factor 1 gamma, conserved domain
23322214Calpain family cysteine protease
22112210Copper fist DNA binding domain
55565531CRAL/TRIO domain
243315192816135BTB/POZ domain
1111116Inhibitor of Apoptosis domain
34444423Voltage gated chloride channel
1211128Caspase domain
111211117759GDSL-like Lipase/Acylhydrolase
1111116Poly-adenylate binding protein, unique domain
111115POLO box duplicated region
11NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
193022191314117ABC transporter transmembrane region
161522Integrase core domain
6108105746FAD binding domain
112325176890Condensation domain
1111116S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1111116HAMP domain
22222212ribosomal L5P family C-terminus
66656635Insulinase (Peptidase family M16)
34343320Dehydrogenase E1 component
1111116Lumazine binding domain
66556634Elongation factor G C-terminus
471054434HMGL-like
44444424DnaJ central domain
2111117Starch binding domain
22223213Ribosomal protein L1p/L10e family
68986542Cation transporting ATPase, C-terminus
810877747Cation transporter/ATPase, N-terminus
22221110dUTPase
56754532Aconitase C-terminal domain
34333319Amino acid kinase family
1111116N-(5'phosphoribosyl)anthranilate (PRA) isomerase
2036393087140Acyl transferase domain
1111116Urease beta subunit
510885440Dihydrodipicolinate synthetase family
324136343029202haloacid dehalogenase-like hydrolase
35433321Glycosyl hydrolases family 2
61510115855Glycosyl hydrolases family 18
1111116Proliferating cell nuclear antigen, N-terminal domain
111115Acylphosphatase
1111116Adenylosuccinate synthetase
22222111Asparaginase, N-terminal
33121212Peptidase S24-like
1111116Inorganic pyrophosphatase
8161414141177Glycosyl hydrolases family 16
42222315Glycosyl hydrolases family 15
131514116766NADH:flavin oxidoreductase / NADH oxidase family
344544243-hydroxyacyl-CoA dehydrogenase, C-terminal domain
23332215Glycosyl hydrolase family 20, catalytic domain
34324521HhH-GPD superfamily base excision DNA repair protein
1111116AIR carboxylase
294237381318177GMC oxidoreductase
34332318Asparagine synthase
99671234Fungal cellulose binding domain
55555530Septin
1111116EF-1 guanine nucleotide exchange domain
1111116Homoserine dehydrogenase
1323110Flavin-binding monooxygenase-like
11LPXTG cell wall anchor motif
33333318tRNA synthetases class I (E and Q), catalytic domain
1111116tRNA synthetases class I (R)
46433424XPG N-terminal domain
122418158885Metallo-beta-lactamase superfamily
3339F5/8 type C domain
22222212Choline/Carnitine o-acyltransferase
1211117Putative esterase
1222119Ferrochelatase
22222212Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1111116Arginosuccinate synthase
1111116Electron transfer flavoprotein FAD-binding domain
33333318RNB domain
81281431055Dioxygenase
33323317CNH domain
22122211Diacylglycerol kinase catalytic domain
77747739Dual specificity phosphatase, catalytic domain
32222213P21-Rho-binding domain
1312139121170PX domain
23223214Ras association (RalGDS/AF-6) domain
55555530UBX domain
44444424VHS domain
1111116Phosphoinositide 3-kinase C2
23332215DAHP synthetase I family
918141991180Carbon-nitrogen hydrolase
23232113N-acetyltransferase
1211117Prephenate dehydratase
54444324Syntaxin
11Pentapeptide repeats (8 copies)
55555530Pumilio-family RNA binding repeat
66566635Histone-like transcription factor (CBF/NF-Y) and archaeal histone
1111116Pterin binding enzyme
22222212ER lumen protein retaining receptor
22222212Glycoprotease family
1222119Histidinol dehydrogenase
44434423impB/mucB/samB family
1211117
1111116Ribosomal L15
1111116Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
1111116Ribosomal L28 family
1111116Ribosomal L29 protein
11114Ribosomal L39 protein
1111116Ribosomal S17
1121117Ribulose-phosphate 3 epimerase family
1111116Translationally controlled tumour protein
22321111Glycosyl hydrolase family 7
1111116RNA pseudouridylate synthase
55555530Histone deacetylase domain
55554428POT family
1111116PWWP domain
1414148121880SET domain
61281151153Isochorismatase family
24443219Permease family
1111116Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
56544630XPG I-region
111115Acetokinase family
22223213DNA photolyase
111515125765Sulfatase
11111166,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
22222212Acyl CoA binding protein
44454425Cullin family
1215121391071FAD binding domain
42418118469O-methyltransferase domain
44435424EamA-like transporter family
11ATP synthase protein 8
22222212
88778846ThiF family
1111116Ribosomal family S4e
3117116341Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
34443523Ammonium Transporter Family
46664430Sulfate permease family
1111217MATH domain
34342218Dehydratase family
24332216Transaldolase/Fructose-6-phosphate aldolase
22222212Mechanosensitive ion channel
2111117GTP cyclohydrolase II
11111163,4-dihydroxy-2-butanone 4-phosphate synthase
44344423Adaptor complexes medium subunit family
87756538Exonuclease
23221111Dipeptidyl peptidase IV (DPP IV) N-terminal region
213NB-ARC domain
162220241416112Glycosyl hydrolase family 3 N terminal domain
1111116Ribosomal protein L44
1111116DNA-dependent RNA polymerase
22222212FAD binding domain in molybdopterin dehydrogenase
1111116Glycosyl transferase family 4
23332316HCO3- transporter family
22222212Nucleosome assembly protein (NAP)
54444425Synaptobrevin
1111116GMP synthase C terminal domain
88LAGLIDADG endonuclease
57566635Adenosine/AMP deaminase
711876847Oxidoreductase FAD-binding domain
57635228Thioesterase domain
22222212Histidine biosynthesis protein
33333419Glycosyltransferase family 20
23121211UDP-glucose/GDP-mannose dehydrogenase family, central domain
22222212Carbamoyl-phosphate synthase small chain, CPSase domain
11349PAS fold
22222212Probable molybdopterin binding domain
44444424Sec1 family
22222212GDP dissociation inhibitor
68866640Sodium/hydrogen exchanger family
22222111RNA polymerase Rpb3/RpoA insert domain
44444424Initiation factor 2 subunit family
22222212Electron transfer flavoprotein domain
1111116Uricase
1111116Ribosomal S3Ae family
1111116Ribosomal L27 protein
1111116GTP1/OBG
22332214Gamma-glutamyltranspeptidase
1113Ribosomal L40e family
111115GrpE
33322215TatD related DNase
1