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PFAM Domains • Tuber aestivum var. urcinatum v1.0
Annotations/GenomesChove1Morco1Morimp1Tubae1Tubma1Tubme1v2TotalAnnotation Description
PFAMs
7,7817,2227,1728,6616,4898,55145,876
1127 transmembrane receptor (rhodopsin family)
1127 transmembrane receptor (Secretin family)
593838455143274ATPase family associated with various cellular activities (AAA)
323333403332203ABC transporter
44444424ATP synthase alpha/beta family, nucleotide-binding domain
112EGF-like domain
15151416151590Elongation factor Tu GTP binding domain
899810953Helix-loop-helix DNA-binding domain
66533326Hsp20/alpha crystallin family
10771381560Hsp70 protein
221111911872KH domain
11114SH2 domain
202019111813101SH3 domain
1010108131061Actin
49127024160156631,281Ankyrin repeat
88787947ADP-ribosylation factor family
33443421Eukaryotic aspartyl protease
44444424Cyclic nucleotide-binding domain
111115Cytochrome c
33342419Double-stranded RNA binding motif
241616218379EF hand
11111164Fe-4S binding domain
22212110Fibronectin type III domain
129857546Glutathione S-transferase, C-terminal domain
12222211Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
54544325Homeodomain
22222212lactate/malate dehydrogenase, NAD binding domain
65454529Myosin head (motor domain)
413538312732204Cytochrome P450
122156154122100111765Protein kinase domain
10131311101067Pyridine nucleotide-disulphide oxidoreductase
272625242627155Ras family
14151514141183Response regulator receiver domain
71307449RNase H
666567546661379RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
4545Reverse transcriptase (RNA-dependent DNA polymerase)
11114Serpin (serine protease inhibitor)
33433319Copper/zinc superoxide dismutase (SODC)
22223213Iron/manganese superoxide dismutases, alpha-hairpin domain
128776747Subtilase family
304141252322182Sugar (and other) transporter
9891181156Thioredoxin
22228Trypsin
55555530Tubulin/FtsZ family, GTPase domain
63218121von Willebrand factor type A domain
566968175320283Zinc finger, C2H2 type
4048443362173Zinc finger, C3HC4 type (RING finger)
2891468772Zinc knuckle
22222212Protein-tyrosine phosphatase
495354414638281short chain dehydrogenase
202020191715111Zinc-binding dehydrogenase
55564429Thiolase, N-terminal domain
43385528Beta-ketoacyl synthase, N-terminal domain
955363312Fe-2S iron-sulfur cluster binding domain
1111116Enolase, C-terminal TIM barrel domain
123Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
78887745Glutamine amidotransferase class-I
11101013131269TCP-1/cpn60 chaperonin family
123ATP synthase A chain
33333318Glutamine synthetase, catalytic domain
122117Triosephosphate isomerase
15131319161793E1-E2 ATPase
118899954Core histone H2A/H2B/H3/H4
76665737Alpha amylase, catalytic domain
22121210Phorbol esters/diacylglycerol binding domain (C1 domain)
777117746Bacterial transferase hexapeptide (six repeats)
44474831tRNA synthetases class I (I, L, M and V)
77887946Cyclin, N-terminal domain
99923335Carboxylesterase family
44434423DNA polymerase family B
33333419ATP synthase subunit C
1111116Peroxidase
1121128Beta-lactamase
33333318C-5 cytosine-specific DNA methylase
123NADH dehydrogenase
252223212118130Calcineurin-like phosphoesterase
8131233544Cellulase (glycosyl hydrolase family 5)
66666636tRNA synthetases class II (D, K and N)
363538343533211Mitochondrial carrier protein
11recA bacterial DNA recombination protein
11141413111174Aminotransferase class I and II
88848339Phosphoribosyl transferase domain
1212121211968Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111116Phosphoglycerate kinase
22222212Ribosomal protein S4/S9 N-terminal domain
22222212Ribosomal protein S12/S23
1111116Chaperonin 10 Kd subunit
1211129111065C2 domain
211919132212106PH domain
9771082061bZIP transcription factor
13121211121070Aldehyde dehydrogenase family
707570605463392Fungal Zn(2)-Cys(6) binuclear cluster domain
192020181918114Cytochrome b5-like Heme/Steroid binding domain
33322215Oxidoreductase molybdopterin binding domain
9111089956Oxidoreductase NAD-binding domain
182525211918126SNF2 family N-terminal domain
22222212Ribosomal protein S7p/S5e
232323222223136Ubiquitin-conjugating enzyme
55555530Isocitrate/isopropylmalate dehydrogenase
22212211Ribosomal Proteins L2, RNA binding domain
1111116Hsp90 protein
22222212Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
112116Dihydrofolate reductase
76644330Chitin recognition protein
23344319Cysteine-rich secretory protein family
1111127Ribosomal protein S3, C-terminal domain
23311111Cupin
33332216Annexin
43344422Eukaryotic-type carbonic anhydrase
333333182-oxoacid dehydrogenases acyltransferase (catalytic domain)
34443321Catalase
1111116Disintegrin
112UDP-glucoronosyl and UDP-glucosyl transferase
45543324Aminotransferase class-III
22212211Ribosomal protein S19
1111116DNA gyrase B
44464426Thiamine pyrophosphate enzyme, central domain
33353421Lyase
23322214Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1111116Adenylate and Guanylate cyclase catalytic domain
1111116ATP synthase delta (OSCP) subunit
111115Orotidine 5'-phosphate decarboxylase / HUMPS family
1111116Indole-3-glycerol phosphate synthase
1111116Pyruvate kinase, barrel domain
1010109101059Kinesin motor domain
272828272528163DnaJ domain
14151513161487Proteasome subunit
32222314Major intrinsic protein
1111116ATP synthase
23322214Glycosyl hydrolase family 1
11111163'5'-cyclic nucleotide phosphodiesterase
1111116Profilin
32222213Ribosomal protein L22p/L17e
22212211Ribosomal protein L14p/L23e
1415159101174Ubiquitin family
43344321Cofilin/tropomyosin-type actin-binding protein
3333331814-3-3 protein
34423218Alkaline phosphatase
1121117Zinc carboxypeptidase
1923221110994Aldo/keto reductase family
201819819993Myb-like DNA-binding domain
44444424Forkhead domain
1111116Glycosyl hydrolases family 32 N-terminal domain
11131310Ribosomal protein L16p/L10e
21122210Ribosomal protein S14p/S29e
43334421FKBP-type peptidyl-prolyl cis-trans isomerase
1111116Glutathione peroxidase
233210
45534324Flavodoxin
1111116Calreticulin family
8111268449Common central domain of tyrosinase
2588852478Aminotransferase class-V
1111116Ribonucleotide reductase, small chain
424851533850282DEAD/DEAH box helicase
718081756677450Helicase conserved C-terminal domain
71121113EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22222212Ribosomal protein L23
1111116Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1111127Ribosomal protein L5
66644430Pyridoxal-dependent decarboxylase conserved domain
33343420Citrate synthase, C-terminal domain
55587434GHMP kinases N terminal domain
55564530Biotin carboxylase, N-terminal domain
1111127Tryptophan synthase alpha chain
99998953Pyridoxal-phosphate dependent enzyme
13131210131374NUDIX domain
34444423pfkB family carbohydrate kinase
44432219Glycosyl hydrolases family 28
22222212Ribosomal protein L3
22222212Ribosomal protein L11, RNA binding domain
12111112121270Histidine phosphatase superfamily (branch 1)
1111149Thymidylate synthase
44444424ATP synthase alpha/beta chain, C terminal domain
46556430Calponin homology (CH) domain
55535326Glutamine amidotransferases class-II
22322213Ribosomal protein S15
22'Cold-shock' DNA-binding domain
111115Thaumatin family
1112117Fructose-1-6-bisphosphatase, N-terminal domain
1111116Ribonucleotide reductase, all-alpha domain
22222212Ribosomal protein S2
32322214SRF-type transcription factor (DNA-binding and dimerisation domain)
79978646GATA zinc finger
181717615780Amino acid permease
444137739Prolyl oligopeptidase family
22222212Ribosomal protein L30p/L7e
46645429Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
44444424Aconitase family (aconitate hydratase)
33311112Glycosyl hydrolase family 10
45524323Glycosyl hydrolases family 17
22222212Ribosomal protein S5, N-terminal domain
1111116Nucleoside diphosphate kinase
112Tetraspanin family
22222212Ribosomal protein S10p/S20e
33333318Arrestin (or S-antigen), N-terminal domain
11Interleukin-1 / 18
1111116Phosphoglucose isomerase
1111116Carbohydrate phosphorylase
1111116SecY translocase
1111116Respiratory-chain NADH dehydrogenase, 49 Kd subunit
21212210Ribosomal protein L6
33333318Polyprenyl synthetase
23333216Hexokinase
66664634Dynamin family
111115Transcription factor TFIID (or TATA-binding protein, TBP)
54424322Rieske [2Fe-2S] domain
112Phytochrome region
112Proton-conducting membrane transporter
77767741Biotin-requiring enzyme
1111116Phosphofructokinase
2221119Ribosomal protein S17
1111116Hydroxymethylglutaryl-coenzyme A reductase
33332317FGGY family of carbohydrate kinases, N-terminal domain
11Prion/Doppel alpha-helical domain
76675637Enoyl-CoA hydratase/isomerase
22222212Ribosomal protein S9/S16
34432218Transcription factor TFIIB repeat
56645430Cytidine and deoxycytidylate deaminase zinc-binding region
1111116Molybdopterin oxidoreductase
47764331Chromo (CHRromatin Organisation MOdifier) domain
22221211Phosphatidylinositol-specific phospholipase C, Y domain
34433320Phosphatidylinositol-specific phospholipase C, X domain
66666636D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
12222211Malic enzyme, N-terminal domain
22211196-phosphogluconate dehydrogenase, C-terminal domain
64485532Multicopper oxidase
1113Granulin
711101071055WW domain
2112129Ribosomal RNA adenine dimethylase
415Yeast PIR protein repeat
10710410599101103619WD domain, G-beta repeat
54465529Heavy-metal-associated domain
33333318Adenylate kinase
33243318Phosphoglucomutase/phosphomannomutase, C-terminal domain
22222212Ribosomal protein S8
1112229Ribosomal protein S11
44444424LIM domain
3321013738Regulator of chromosome condensation (RCC1) repeat
22222111Ribosomal protein S13/S18
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
22222212chorismate binding enzyme
3333331860s Acidic ribosomal protein
44434322Prenyltransferase and squalene oxidase repeat
64455428Protein kinase C terminal domain
11114Single-strand binding protein family
1111116S-adenosylmethionine synthetase, N-terminal domain
66677739Bromodomain
11Bacterial regulatory proteins, tetR family
988681049Acyl-CoA dehydrogenase, C-terminal domain
16161614162098Ubiquitin carboxyl-terminal hydrolase
111115Ribosomal protein L36
111115Ribonuclease T2 family
33323317HSF-type DNA-binding
22222212SRP54-type protein, GTPase domain
1111116Urease alpha-subunit, N-terminal domain
65444427Serine carboxypeptidase
108888850Phosphatidylinositol 3- and 4-kinase
1222119Transketolase, thiamine diphosphate binding domain
22222212Inositol monophosphatase family
44444323Glutaredoxin
22222212Isocitrate lyase family
22232213Serine hydroxymethyltransferase
1222119Iron-containing alcohol dehydrogenase
12221210Ribosomal protein L10
44443423KOW motif
111115Ribosomal protein L34
33333318RF-1 domain
22222212Sodium:solute symporter family
1111116Imidazoleglycerol-phosphate dehydratase
1221118DNA polymerase family A
1112117IMP dehydrogenase / GMP reductase domain
111115Glucose-6-phosphate dehydrogenase, NAD binding domain
65546531Protein phosphatase 2C
34454525Nucleotidyl transferase
13422113Carbonic anhydrase
12232414Phosphoribulokinase / Uridine kinase family
54445426Fatty acid desaturase
66676637MutS domain V
1111116Delta-aminolevulinic acid dehydratase
34443321Arginase family
76666637MCM P-loop domain
1112128Squalene/phytoene synthase
11Bacterial extracellular solute-binding proteins, family 5 Middle
1010101010959FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
202424262021135AMP-binding enzyme
33333318G-protein alpha subunit
66779843HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
11Cytochrome c oxidase subunit III
101212119963His Kinase A (phospho-acceptor) domain
33333318Armadillo/beta-catenin-like repeat
392524193620163Tetratricopeptide repeat
32323215Ion transport protein
1111116DNA gyrase/topoisomerase IV, subunit A
11Binding-protein-dependent transport system inner membrane component
13109712657BRCA1 C Terminus (BRCT) domain
655471239Glycosyl transferases group 1
23332215Glycosyl transferase family 2
21131210SAM domain (Sterile alpha motif)
1111116linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
4101011228Pectate lyase
1111116ribonuclease
1111116Urease, gamma subunit
54443323CoA-ligase
877107948Phosphopantetheine attachment site
23342216Formyl transferase
87787845Metallopeptidase family M24
101515114156Leucine Rich Repeat
211720416583alpha/beta hydrolase fold
33333318RNA polymerase Rpb2, domain 6
11EAL domain
44444424PB1 domain
22222212Staphylococcal nuclease homologue
10111113111167Rab-GTPase-TBC domain
1111116Tudor domain
111115WH1 domain
74546531Zinc finger, ZZ type
1221118HRDC domain
109101110858CBS domain
22222212Ribosomal protein L13
22222212Ribosomal protein L4/L1 family
1111116Clp protease
34445525S1 RNA binding domain
1111116HIUase/Transthyretin family
44454425AhpC/TSA family
45554427tRNA synthetases class I (W and Y)
212101218UvrD/REP helicase N-terminal domain
65565734Rhodanese-like domain
22232516Universal stress protein family
212422151815115Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
1111116C-terminal regulatory domain of Threonine dehydratase
22222212AIR synthase related protein, N-terminal domain
88878948tRNA synthetase class II core domain (G, H, P, S and T)
1221118SpoU rRNA Methylase family
11Phage integrase family
22212211Tetrapyrrole (Corrin/Porphyrin) Methylases
1111116Glycosyl transferase family, a/b domain
33TonB dependent receptor
11114PDZ domain
33322417Class II Aldolase and Adducin N-terminal domain
44444424Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
55545529Fes/CIP4, and EFC/F-BAR homology domain
55334424IQ calmodulin-binding motif
42222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
55524223Phospholipase D Active site motif
11141311Regulator of G protein signaling domain
44444424GTPase-activator protein for Ras-like GTPase
44454425RasGEF domain
55555429RasGEF N-terminal motif
11111011121065RhoGAP domain
66666636RhoGEF domain
55593835SPRY domain
43334320RNA polymerase Rpb1, domain 2
21122210Guanylate kinase
44433321Gelsolin repeat
79977645UBA/TS-N domain
1619211013887PHD-finger
11Filamin/ABP280 repeat
122117GGL domain
66666636HECT-domain (ubiquitin-transferase)
2111218Helix-hairpin-helix motif
1111116MSP (Major sperm protein) domain
56644429Ribonuclease III domain
21152516Region in Clathrin and VPS
23333317RanBP1 domain
22212110PPIC-type PPIASE domain
32323215Zn-finger in Ran binding protein and others
1816158151082Zinc finger C-x8-C-x5-C-x3-H type (and similar)
14422215Poly(ADP-ribose) polymerase catalytic domain
111115Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
948479165912344F-box domain
1111116Elongation factor 1 gamma, conserved domain
22222212Calpain family cysteine protease
22222212Copper fist DNA binding domain
54445527CRAL/TRIO domain
811111511965BTB/POZ domain
3328Ricin-type beta-trefoil lectin domain
1111116Inhibitor of Apoptosis domain
34433320Voltage gated chloride channel
1221118Caspase domain
6101013131GDSL-like Lipase/Acylhydrolase
1111116Poly-adenylate binding protein, unique domain
1111116POLO box duplicated region
13161615151388ABC transporter transmembrane region
11Integrase core domain
46644428FAD binding domain
2111218Condensation domain
1111116S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1111116HAMP domain
22222414ribosomal L5P family C-terminus
64465631Insulinase (Peptidase family M16)
33333318Dehydrogenase E1 component
11114Lumazine binding domain
66676637Elongation factor G C-terminus
44434423HMGL-like
43344422DnaJ central domain
22232314Ribosomal protein L1p/L10e family
87777844Cation transporting ATPase, C-terminus
98888849Cation transporter/ATPase, N-terminus
1112117dUTPase
44444323Aconitase C-terminal domain
44454526Amino acid kinase family
1221118N-(5'phosphoribosyl)anthranilate (PRA) isomerase
733541032Acyl transferase domain
1111116Urease beta subunit
34423117Dihydrodipicolinate synthetase family
262627172415135haloacid dehalogenase-like hydrolase
24421215Glycosyl hydrolases family 2
63334423Glycosyl hydrolases family 18
61111111Proliferating cell nuclear antigen, N-terminal domain
11Translation initiation factor IF-3, C-terminal domain
1111116Acylphosphatase
1111116Adenylosuccinate synthetase
1111116Asparaginase, N-terminal
32233215Peptidase S24-like
111115Inorganic pyrophosphatase
55555530Glycosyl hydrolases family 16
1221118Glycosyl hydrolases family 15
23311111NADH:flavin oxidoreductase / NADH oxidase family
22211193-hydroxyacyl-CoA dehydrogenase, C-terminal domain
22222212Glycosyl hydrolase family 20, catalytic domain
33353522HhH-GPD superfamily base excision DNA repair protein
1111116AIR carboxylase
89976847GMC oxidoreductase
22222212Asparagine synthase
9181621349Fungal cellulose binding domain
66656635Septin
1111116EF-1 guanine nucleotide exchange domain
1112117Homoserine dehydrogenase
22221312Flavin-binding monooxygenase-like
33333318tRNA synthetases class I (E and Q), catalytic domain
1111116tRNA synthetases class I (R)
44433321XPG N-terminal domain
88867441Metallo-beta-lactamase superfamily
1221118F5/8 type C domain
23332215Choline/Carnitine o-acyltransferase
1111116Putative esterase
1111116Ferrochelatase
22222212Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1111318Arginosuccinate synthase
1111116Electron transfer flavoprotein FAD-binding domain
43333319RNB domain
26634223Dioxygenase
22232314CNH domain
1111116Diacylglycerol kinase catalytic domain
9101099956Dual specificity phosphatase, catalytic domain
22222212P21-Rho-binding domain
12111211121169PX domain
33323216Ras association (RalGDS/AF-6) domain
66666636UBX domain
44464527VHS domain
1111116Phosphoinositide 3-kinase C2
22222212DAHP synthetase I family
66666636Carbon-nitrogen hydrolase
11Geminivirus Rep catalytic domain
1112117Prephenate dehydratase
44444424Syntaxin
54445426Pumilio-family RNA binding repeat
67766638Histone-like transcription factor (CBF/NF-Y) and archaeal histone
1111116Pterin binding enzyme
22222212ER lumen protein retaining receptor
22222212tRNA N6-adenosine threonylcarbamoyltransferase
1111116Histidinol dehydrogenase
33443219impB/mucB/samB family
21126
1111116Ribosomal L15
11131310Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
1111116Ribosomal L28 family
111115Ribosomal L29 protein
11114Ribosomal L39 protein
1111116Ribosomal S17
1111116Ribulose-phosphate 3 epimerase family
1111116Translationally controlled tumour protein
224Glycosyl hydrolase family 7
112Ring hydroxylating alpha subunit (catalytic domain)
111115RNA pseudouridylate synthase
44454425Histone deacetylase domain
33322316POT family
1111116PWWP domain
17141516141591SET domain
66666737Isochorismatase family
33333419Permease family
1221219Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
44444424XPG I-region
112Acetokinase family
122117DNA photolyase
11114NlpC/P60 family
112Cation-independent mannose-6-phosphate receptor repeat
112Zinc dependent phospholipase C
1112128Sulfatase
11111166,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
22222212Acyl CoA binding protein
84444327Cullin family
76638232FAD binding domain
31123313O-methyltransferase domain
25632321EamA-like transporter family
22239
88888848ThiF family
1111116Ribosomal family S4e
43323217Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
42234419Ammonium Transporter Family
45553426Sulfate permease family
1111116MATH domain
22322213Dehydratase family
22221110Transaldolase/Fructose-6-phosphate aldolase
22222212Mechanosensitive ion channel
1112128GTP cyclohydrolase II
11111163,4-dihydroxy-2-butanone 4-phosphate synthase
44443423Adaptor complexes medium subunit family
68656738Exonuclease
222117529Dipeptidyl peptidase IV (DPP IV) N-terminal region
11779593NB-ARC domain
10121285552Glycosyl hydrolase family 3 N terminal domain
1111116Ribosomal protein L44
112Sodium:sulfate symporter transmembrane region
111115DNA-dependent RNA polymerase
252223236FAD binding domain in molybdopterin dehydrogenase
1111116Glycosyl transferase family 4
32222213HCO3- transporter family
22212110Nucleosome assembly protein (NAP)
44454425Synaptobrevin
1111116GMP synthase C terminal domain
1113Phage lysozyme
11516LAGLIDADG endonuclease
33333217Adenosine/AMP deaminase
54345526Oxidoreductase FAD-binding domain
1112117Thioesterase domain
22232213Histidine biosynthesis protein
33333318Glycosyltransferase family 20
112UDP-glucose/GDP-mannose dehydrogenase family, central domain
22222212Carbamoyl-phosphate synthase small chain, CPSase domain
21222211Probable molybdopterin binding domain
44434827Sec1 family
22222212GDP dissociation inhibitor
45533323Sodium/hydrogen exchanger family
22222212RNA polymerase Rpb3/RpoA insert domain
44454425Initiation factor 2 subunit family
112PQQ enzyme repeat
22222212Electron transfer flavoprotein domain
1111116Uricase
1111116Ribosomal S3Ae family
11114Ribosomal L27 protein
1111116GTP1/OBG
24431216Gamma-glutamyltranspeptidase
1113Ribosomal L40e family
1111116GrpE
43354423TatD related DNase
1112128Inhibitor of apoptosis-promoting Bax1
1111116Eukaryotic DNA topoisomerase I, catalytic core
56655532Dynamin central region
12211186-O-methylguanine DNA methyltransferase, DNA binding domain
11114Bacteriorhodopsin-like protein
22222313Carboxyl transferase domain
32223315UbiA prenyltransferase family
11DegT/DnrJ/EryC1/StrS aminotransferase family
34443321Endoribonuclease L-PSP
2