PFAM Domains • Phycomyces nitens S607 v1.0
Annotations/GenomesCirumb1Phybl2PnitS607_1PnitS608_1PnitS609_1Radspe1Spifus1Synrac1Zycmex1TotalAnnotation Description
PFAMs
11,8539,21610,86311,13211,08710,7929,37110,79811,73296,844
117 transmembrane receptor (rhodopsin family)
1111267 transmembrane receptor (Secretin family)
231224334247 transmembrane sweet-taste receptor of 3 GCPR
444843454642424646402ATPase family associated with various cellular activities (AAA)
444845464537283747377ABC transporter
912288588565ATP synthase alpha/beta family, nucleotide-binding domain
232118171817192121175Elongation factor Tu GTP binding domain
373536404038333337329Helix-loop-helix DNA-binding domain
523212Hsp20/alpha crystallin family
141229313317131414177Hsp70 protein
12121010101110121198KH domain
11SH2 domain
393735333532313431307SH3 domain
121111121111151111105Actin
133713151312969127Ankyrin repeat
910111111101110992ADP-ribosylation factor family
273333353620212325253Eukaryotic aspartyl protease
77777757761Cyclic nucleotide-binding domain
21111112212Cytochrome c
11222112113Double-stranded RNA binding motif
135222331352EF hand
114Fe-4S binding domain
111115Fibronectin type III domain
213Globin
977653105860Glutathione S-transferase, C-terminal domain
33333324327Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
222820212125162023196Homeodomain
65444635643lactate/malate dehydrogenase, NAD binding domain
121616151614141212127Myosin head (motor domain)
745444464631775090512Cytochrome P450
2212202222292322132052132241,979Protein kinase domain
161615151416111420137Pyridine nucleotide-disulphide oxidoreductase
565454545554515152481Ras family
231819182018131923171Response regulator receiver domain
2112134115RNase H
989710110110090948391855RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
33Reverse transcriptase (RNA-dependent DNA polymerase)
52222323526Copper/zinc superoxide dismutase (SODC)
1111111119Iron/manganese superoxide dismutases, alpha-hairpin domain
312420212018151724190Subtilase family
512827273025214447300Sugar (and other) transporter
131312121214111813118Thioredoxin
12222212216Trypsin
59354834950Tubulin/FtsZ family, GTPase domain
3720349524028243723493Zinc finger, C2H2 type
6556667675104Zinc finger, C3HC4 type (RING finger)
1670161518129816180Zinc knuckle
55777575654Protein-tyrosine phosphatase
523323272730263950307short chain dehydrogenase
352319222211213137221Zinc-binding dehydrogenase
105766548859Thiolase, N-terminal domain
22322222219Beta-ketoacyl synthase, N-terminal domain
141111111122Fe-2S iron-sulfur cluster binding domain
22222212217Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
22Cytochrome C oxidase subunit II, periplasmic domain
1010111111889987Glutamine amidotransferase class-I
121516161712141111124TCP-1/cpn60 chaperonin family
56666334645Glutamine synthetase, catalytic domain
1111111119Triosephosphate isomerase
332634363534313034293E1-E2 ATPase
162014141816141416142Core histone H2A/H2B/H3/H4
21111112212Alpha amylase, catalytic domain
14791010116121190Phorbol esters/diacylglycerol binding domain (C1 domain)
65544867651Bacterial transferase hexapeptide (six repeats)
64566666651tRNA synthetases class I (I, L, M and V)
141815151615121314132Cyclin, N-terminal domain
21243342122Carboxylesterase family
44444545438DNA polymerase family B
34444433332ATP synthase subunit C
111111118Legume lectin domain
22222223219Peroxidase
3126Beta-lactamase
34444442332C-5 cytosine-specific DNA methylase
333429323330273735290Calcineurin-like phosphoesterase
94555435646Cellulase (glycosyl hydrolase family 5)
66666666654tRNA synthetases class II (D, K and N)
535454565460465353483Mitochondrial carrier protein
202018191919122020167Aminotransferase class I and II
611555655654Phosphoribosyl transferase domain
121412141413141311117Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111112110Phosphoglycerate kinase
33332433226Ribosomal protein S4/S9 N-terminal domain
34444443333Ribosomal protein S12/S23
12222111113Chaperonin 10 Kd subunit
192218182119191722175C2 domain
394836393639313641345PH domain
281928282930232725237bZIP transcription factor
221212131417151822145Aldehyde dehydrogenase family
664738353940255651397Fungal Zn(2)-Cys(6) binuclear cluster domain
343934343530292932296Cytochrome b5-like Heme/Steroid binding domain
31111112314Oxidoreductase molybdopterin binding domain
121312131311151412115Oxidoreductase NAD-binding domain
242024242527222323212SNF2 family N-terminal domain
33455443233Ribosomal protein S7p/S5e
222020202120181820179Ubiquitin-conjugating enzyme
88888757867Isocitrate/isopropylmalate dehydrogenase
44444544336Ribosomal Proteins L2, RNA binding domain
44544345437Hsp90 protein
26855322235Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
22222221217Dihydrofolate reductase
3122213216Cysteine-rich secretory protein family
34444533333Ribosomal protein S3, C-terminal domain
344445433342-oxoacid dehydrogenases acyltransferase (catalytic domain)
42222413323Catalase
32212322320Disintegrin
41333422830UDP-glucoronosyl and UDP-glucosyl transferase
56666856654Aminotransferase class-III
34444344333Ribosomal protein S19
1111111119DNA gyrase B
23333323224Thiamine pyrophosphate enzyme, central domain
54444546541Lyase
33333323427Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
22222422220Ferritin-like domain
12222222116Adenylate and Guanylate cyclase catalytic domain
1111111119ATP synthase delta (OSCP) subunit
111111118Orotidine 5'-phosphate decarboxylase / HUMPS family
1111111119Indole-3-glycerol phosphate synthase
33233313324Pyruvate kinase, barrel domain
222023222230332224218Kinesin motor domain
313437393937303231310DnaJ domain
141414141414141414126Proteasome subunit
22222112216Major intrinsic protein
12221121113ATP synthase
566667555513'5'-cyclic nucleotide phosphodiesterase
31111111111Profilin
35522453332Ribosomal protein L22p/L17e
33333333327Ribosomal protein L14p/L23e
222322232220151716180Ubiquitin family
64787666555Cofilin/tropomyosin-type actin-binding protein
3333333332714-3-3 protein
53333443432Alkaline phosphatase
282021212219122533201Aldo/keto reductase family
172022232324181816181Myb-like DNA-binding domain
910111111997986Forkhead domain
11114Glycosyl hydrolases family 32 N-terminal domain
41444443432Ribosomal protein L16p/L10e
34433333329Ribosomal protein S14p/S29e
56566767553FKBP-type peptidyl-prolyl cis-trans isomerase
12222111113Glutathione peroxidase
33
8139101091210889Flavodoxin
12212111112Calreticulin family
65566557752Aminotransferase class-V
11111211110Ribonucleotide reductase, small chain
524750555854555560486DEAD/DEAH box helicase
857479858382868288744Helicase conserved C-terminal domain
1111111119EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
33444443332Ribosomal protein L23
7111112721Pyridoxal-dependent decarboxylase, C-terminal sheet domain
25444543233Ribosomal protein L5
45555424438Pyridoxal-dependent decarboxylase conserved domain
22333212220Citrate synthase, C-terminal domain
66666666654GHMP kinases N terminal domain
9111011117691084Biotin carboxylase, N-terminal domain
1111111119Tryptophan synthase alpha chain
109999989981Pyridoxal-phosphate dependent enzyme
112'Paired box' domain
181616171817181818156NUDIX domain
56555555546pfkB family carbohydrate kinase
698888653Glycosyl hydrolases family 28
23333333225Ribosomal protein L3
35555444338Ribosomal protein L11, RNA binding domain
911910101088984Histidine phosphatase superfamily (branch 1)
1111111119Thymidylate synthase
11Gamma-thionin family
912277588563ATP synthase alpha/beta chain, C terminal domain
11912111212141313107Calponin homology (CH) domain
56444424639Glutamine amidotransferases class-II
22222323220Ribosomal protein S15
2222112214'Cold-shock' DNA-binding domain
1955544441666Thaumatin family
1111111119Fructose-1-6-bisphosphatase, N-terminal domain
22222222218Ribonucleotide reductase, all-alpha domain
34443443332Ribosomal protein S2
97888646965SRF-type transcription factor (DNA-binding and dimerisation domain)
383539394028323336320GATA zinc finger
619877788777Amino acid permease
66656776655Prolyl oligopeptidase family
55777663450Ribosomal protein L30p/L7e
42222423526Histidine phosphatase superfamily (branch 2)
1111111119Respiratory-chain NADH dehydrogenase, 30 Kd subunit
55555644544Aconitase family (aconitate hydratase)
41222225222Glycosyl hydrolases family 17
35534433333Ribosomal protein S5, N-terminal domain
54554525540Nucleoside diphosphate kinase
85555545749Tetraspanin family
33333333327Ribosomal protein S10p/S20e
282229303035202530249Arrestin (or S-antigen), N-terminal domain
21111112212Phosphoglucose isomerase
22Carbohydrate phosphorylase
22122212216SecY translocase
1111111119Respiratory-chain NADH dehydrogenase, 49 Kd subunit
34344333330Ribosomal protein L6
54444645541Polyprenyl synthetase
878889711975Hexokinase
98101010688978Dynamin family
1111111119Biopterin-dependent aromatic amino acid hydroxylase
22211211214Transcription factor TFIID (or TATA-binding protein, TBP)
45555534541Rieske [2Fe-2S] domain
33Proton-conducting membrane transporter
1110101111119111195Biotin-requiring enzyme
22221222217Phosphofructokinase
22222322219Ribosomal protein S17
21111212213Hydroxymethylglutaryl-coenzyme A reductase
46777555551FGGY family of carbohydrate kinases, N-terminal domain
11111311111Sodium:dicarboxylate symporter family
211178885101492Enoyl-CoA hydratase/isomerase
34444443333Ribosomal protein S9/S16
23333422224Transcription factor TFIIB repeat
74666556651Cytidine and deoxycytidylate deaminase zinc-binding region
12221211113Molybdopterin oxidoreductase
17221189991118114Chromo (CHRromatin Organisation MOdifier) domain
112Phosphatidylinositol-specific phospholipase C, X domain
75555424643D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
54444535539Malic enzyme, N-terminal domain
222222124196-phosphogluconate dehydrogenase, C-terminal domain
755556571459Multicopper oxidase
14714141511141513117WW domain
33233343327Ribosomal RNA adenine dimethylase
1571621641681671681561621611,465WD domain, G-beta repeat
112Calponin family repeat
44544545540Heavy-metal-associated domain
55667564549Adenylate kinase
42333334429Phosphoglucomutase/phosphomannomutase, C-terminal domain
23333333225Ribosomal protein S8
23333422224Ribosomal protein S11
161413171514141614133LIM domain
54766855652Regulator of chromosome condensation (RCC1) repeat
32344453331Ribosomal protein S13/S18
1111116Tau and MAP protein, tubulin-binding repeat
22NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
22222222218chorismate binding enzyme
6768969666360s Acidic ribosomal protein
34444453334Prenyltransferase and squalene oxidase repeat
811789768973Protein kinase C terminal domain
31111111313Single-strand binding protein family
11114Type II/IV secretion system protein
11111211110S-adenosylmethionine synthetase, N-terminal domain
151417171716151616143Bromodomain
161617171716121717145Acyl-CoA dehydrogenase, C-terminal domain
212118191820172021175Ubiquitin carboxyl-terminal hydrolase
1111111119Ribosomal protein L36
24333132223Ribonuclease T2 family
191414141516141921146HSF-type DNA-binding
22222222117SRP54-type protein, GTPase domain
12222211114Urease alpha-subunit, N-terminal domain
97656636755Serine carboxypeptidase
10101010811991289Phosphatidylinositol 3- and 4-kinase
32222224322Transketolase, thiamine diphosphate binding domain
111111118WHEP-TRS domain
2222232217Inositol monophosphatase family
654551255653Glutaredoxin
21111212213Isocitrate lyase family
22222222218Serine hydroxymethyltransferase
11111121110Iron-containing alcohol dehydrogenase
32244333327Ribosomal protein L10
7811111112661183KOW motif
1111111119Ribosomal protein L34
111111118Ribosomal protein L33
32333333326RF-1 domain
1113Sodium:solute symporter family
11111121110Imidazoleglycerol-phosphate dehydratase
1111111119DNA polymerase family A
11111121110IMP dehydrogenase / GMP reductase domain
33232313323Glucose-6-phosphate dehydrogenase, NAD binding domain
711111111988783Protein phosphatase 2C
54554655544Nucleotidyl transferase
12222211114Carbonic anhydrase
21222222116Phosphoribulokinase / Uridine kinase family
5161516166135496Fatty acid desaturase
66666756755MutS domain V
1111111119Delta-aminolevulinic acid dehydratase
43233215427Arginase family
66466667653MCM P-loop domain
44555533438Squalene/phytoene synthase
201820211919151919170FHA domain
22NADH-ubiquinone/plastoquinone oxidoreductase chain 6
463636363631364243342AMP-binding enzyme
12101010101211111298G-protein alpha subunit
242323212119212420196HMG (high mobility group) box
17888897101590His Kinase A (phospho-acceptor) domain
710777868666Armadillo/beta-catenin-like repeat
263121202218161724195Tetratricopeptide repeat
67778675558Ion transport protein
1111111119DNA gyrase/topoisomerase IV, subunit A
11Periplasmic binding proteins and sugar binding domain of LacI family
96776859764BRCA1 C Terminus (BRCT) domain
88767768865Glycosyl transferases group 1
25222232222Glycosyl transferase family 2
53555432436SAM domain (Sterile alpha motif)
2222222216linker histone H1 and H5 family
1111111119Ribosomal protein L7/L12 C-terminal domain
12222211114Urease, gamma subunit
53333415532CoA-ligase
68999479566Phosphopantetheine attachment site
22222222218Formyl transferase
141414141413131215123Metallopeptidase family M24
1233151716131296133Leucine Rich Repeat
723575766874alpha/beta hydrolase fold
33333333327RNA polymerase Rpb2, domain 6
181011121311111213111PB1 domain
22222223219Staphylococcal nuclease homologue
272929313129252626253Rab-GTPase-TBC domain
21111121212Tudor domain
31222323321WH1 domain
65666765552Zinc finger, ZZ type
11112211111HRDC domain
151816181718151416147CBS domain
35655543339Ribosomal protein L13
24344442229Ribosomal protein L4/L1 family
1111111119Clp protease
53545443538S1 RNA binding domain
1111111119HIUase/Transthyretin family
45666445444AhpC/TSA family
44444444335tRNA synthetases class I (W and Y)
111111118UvrD/REP helicase N-terminal domain
12814151516121412118Rhodanese-like domain
9121314131089997Universal stress protein family
292721212124142627210Acetyltransferase (GNAT) family
12222111113SecE/Sec61-gamma subunits of protein translocation complex
1111111119C-terminal regulatory domain of Threonine dehydratase
22222222218AIR synthase related protein, N-terminal domain
8117889981078tRNA synthetase class II core domain (G, H, P, S and T)
33333323326SpoU rRNA Methylase family
33332323325Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
112PDZ domain
22222222218Class II Aldolase and Adducin N-terminal domain
1222222215Diacylglycerol kinase accessory domain
106101110107111085Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
11813141512111112107Fes/CIP4, and EFC/F-BAR homology domain
78778877766IQ calmodulin-binding motif
33332322324Phosphoinositide 3-kinase family, accessory domain (PIK domain)
68665646653Phospholipase D Active site motif
151020191914121314136Regulator of G protein signaling domain
6101010109105676GTPase-activator protein for Ras-like GTPase
171820202020171817167RasGEF domain
131014131413131312115RasGEF N-terminal motif
342931333535283234291RhoGAP domain
372834343433253436295RhoGEF domain
101011111111791090SPRY domain
33333333327RNA polymerase Rpb1, domain 2
1111111119Guanylate kinase
78898656764Gelsolin repeat
121511111214101310108UBA/TS-N domain
202621232423171918191PHD-finger
33444334331GGL domain
999998109981HECT-domain (ubiquitin-transferase)
111111118Helix-hairpin-helix motif
42333323427MSP (Major sperm protein) domain
22111311214Ribonuclease III domain
62666557750Region in Clathrin and VPS
22222222218RanBP1 domain
12222122115PPIC-type PPIASE domain
44435554640Zn-finger in Ran binding protein and others
201410121317151517133Zinc finger C-x8-C-x5-C-x3-H type (and similar)
22111119B-box zinc finger
111111118Poly(ADP-ribose) polymerase catalytic domain
1111212110Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
612022923241073238426F-box domain
22222111215Elongation factor 1 gamma, conserved domain
1111111119Calpain family cysteine protease
57677646553Copper fist DNA binding domain
88989959974CRAL/TRIO domain
123127252518191311181BTB/POZ domain
8810109676670Ricin-type beta-trefoil lectin domain
111111118Inhibitor of Apoptosis domain
22222222218Voltage gated chloride channel
35667333339Caspase domain
13888987161592GDSL-like Lipase/Acylhydrolase
55777565653Poly-adenylate binding protein, unique domain
11111117POLO box duplicated region
172422232314111418166ABC transporter transmembrane region
44Integrase core domain
798998119878FAD binding domain
111115Condensation domain
1111111119S-adenosyl-L-homocysteine hydrolase, NAD binding domain
33333323326HAMP domain
35555543338ribosomal L5P family C-terminus
9910101081181085Insulinase (Peptidase family M16)
74444547746Dehydrogenase E1 component
1111111119Lumazine binding domain
87677777965Elongation factor G C-terminus
66666565652HMGL-like
56777645552DnaJ central domain
112Sulfotransferase domain
43665564443Ribosomal protein L1p/L10e family
161312151515131215126Cation transporting ATPase, C-terminus
191519222121151918169Cation transporter/ATPase, N-terminus
11111117dUTPase
45555644442Aconitase C-terminal domain
67777846759Amino acid kinase family
1111111119N-(5'phosphoribosyl)anthranilate (PRA) isomerase
22222222218Acyl transferase domain
12222211114Urease beta subunit
2111111210Dihydrodipicolinate synthetase family
224223262525221822225haloacid dehalogenase-like hydrolase
10898989121285Glycosyl hydrolases family 18
11111