Due to a planned NERSC power outage, JGI portals will be unavailable 6:00am PDT July 10 - 11:59pm PDT July 14. System Status updates available here.
PFAM Domains • Botryozyma mucatilis CBS 9042 v1.0
Annotations/GenomesArxad1Botmuc1Canca1Lipst1_1Spola1Symat1Wicdo1TotalAnnotation Description
PFAMs
5,9125,9234,4746,3676,2005,7405,50140,117
33293035323433226ATPase family associated with various cellular activities (AAA)
26232556242925208ABC transporter
444444428ATP synthase alpha/beta family, nucleotide-binding domain
11EGF-like domain
1313121414131493Elongation factor Tu GTP binding domain
8579128453Helix-loop-helix DNA-binding domain
52242217Hsp20/alpha crystallin family
777777749Hsp70 protein
8759107349KH domain
11114SH2 domain
21121621102013113SH3 domain
101081011101069Actin
172101641766Ankyrin repeat
777777951ADP-ribosylation factor family
246484281589Eukaryotic aspartyl protease
444434225Cyclic nucleotide-binding domain
11111117Cytochrome c
231322114Double-stranded RNA binding motif
163141521767EF hand
211154Fe-4S binding domain
31212110Fibronectin type III domain
31212110Globin
1042712430Glutathione S-transferase, C-terminal domain
11112118Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
542637330Homeodomain
222222214lactate/malate dehydrogenase, NAD binding domain
533534528Myosin head (motor domain)
135521810466Cytochrome P450
87877986938274588Protein kinase domain
9651058750Pyridine nucleotide-disulphide oxidoreductase
25201923232717154Ras family
864748643Response regulator receiver domain
11114RNase H
58474062576025349RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
213Reverse transcriptase (RNA-dependent DNA polymerase)
21111118Copper/zinc superoxide dismutase (SODC)
21111219Iron/manganese superoxide dismutases, alpha-hairpin domain
5106545439Subtilase family
611510103206618293Sugar (and other) transporter
977898856Thioredoxin
11215Trypsin
455544431Tubulin/FtsZ family, GTPase domain
123von Willebrand factor type A domain
3893041123412176Zinc finger, C2H2 type
35230342344141Zinc finger, C3HC4 type (RING finger)
8103935139Zinc knuckle
222222214Protein-tyrosine phosphatase
51172080203922249short chain dehydrogenase
25142340192611158Zinc-binding dehydrogenase
543543226Thiolase, N-terminal domain
222522217Beta-ketoacyl synthase, N-terminal domain
4233242202Fe-2S iron-sulfur cluster binding domain
11111139Enolase, C-terminal TIM barrel domain
887888855Glutamine amidotransferase class-I
10119910101069TCP-1/cpn60 chaperonin family
222112111Glutamine synthetase, catalytic domain
211312111Triosephosphate isomerase
111381715111489E1-E2 ATPase
865789649Core histone H2A/H2B/H3/H4
11Bacterial regulatory helix-turn-helix protein, lysR family
3111914130Alpha amylase, catalytic domain
1222119Phorbol esters/diacylglycerol binding domain (C1 domain)
534655331Bacterial transferase hexapeptide (six repeats)
344353527tRNA synthetases class I (I, L, M and V)
10967108959Cyclin, N-terminal domain
731718128Carboxylesterase family
434444427DNA polymerase family B
333434323ATP synthase subunit C
221232214Peroxidase
23229Beta-lactamase
22191529172018140Calcineurin-like phosphoesterase
421334320Cellulase (glycosyl hydrolase family 5)
666666642tRNA synthetases class II (D, K and N)
38323335343835245Mitochondrial carrier protein
11recA bacterial DNA recombination protein
1312111112111181Aminotransferase class I and II
736849441Phosphoribosyl transferase domain
1210491213464Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
221222213Ribosomal protein S4/S9 N-terminal domain
222222214Ribosomal protein S12/S23
22318Bacterial regulatory helix-turn-helix proteins, AraC family
11111117Chaperonin 10 Kd subunit
986897552C2 domain
18914141118892PH domain
9537710748bZIP transcription factor
159101110111278Aldehyde dehydrogenase family
943243125567627453Fungal Zn(2)-Cys(6) binuclear cluster domain
15101219151517103Cytochrome b5-like Heme/Steroid binding domain
112Oxidoreductase molybdopterin binding domain
897899757Oxidoreductase NAD-binding domain
18171719181818125SNF2 family N-terminal domain
222222214Ribosomal protein S7p/S5e
14181521131612109Ubiquitin-conjugating enzyme
555666538Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
1111116Hsp90 protein
222222214Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
22Chitin recognition protein
13411111Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
112Cupin
11Annexin
112Eukaryotic-type carbonic anhydrase
3332232182-oxoacid dehydrogenases acyltransferase (catalytic domain)
322622118Catalase
11114Disintegrin
1113UDP-glucoronosyl and UDP-glucosyl transferase
443443426Aminotransferase class-III
222222214Ribosomal protein S19
12111118DNA gyrase B
545564534Thiamine pyrophosphate enzyme, central domain
333333321Lyase
222222214Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11211118Adenylate and Guanylate cyclase catalytic domain
1111116ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
11111117Indole-3-glycerol phosphate synthase
11112118Pyruvate kinase, barrel domain
9886610754Kinesin motor domain
24242124242321161DnaJ domain
1414141414141498Proteasome subunit
121231212Major intrinsic protein
11111117ATP synthase
8513Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
1111116Profilin
121121210Ribosomal protein L22p/L17e
211222212Ribosomal protein L14p/L23e
101081199865Ubiquitin family
442444325Cofilin/tropomyosin-type actin-binding protein
22222221414-3-3 protein
123118Alkaline phosphatase
111115Zinc carboxypeptidase
20764114209117Aldo/keto reductase family
1441113415768Myb-like DNA-binding domain
333333321Forkhead domain
281112Glycosyl hydrolases family 32 N-terminal domain
132129Ribosomal protein L16p/L10e
222222214Ribosomal protein S14p/S29e
333333321FKBP-type peptidyl-prolyl cis-trans isomerase
11111128Glutathione peroxidase
12216
6661055442Flavodoxin
11111117Calreticulin family
666666642Aminotransferase class-V
11111117Ribonucleotide reductase, small chain
36373036333237241DEAD/DEAH box helicase
62565370535558407Helicase conserved C-terminal domain
11Fructose-bisphosphate aldolase class-I
11111117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222113Ribosomal protein L23
11111117Pyridoxal-dependent decarboxylase, C-terminal sheet domain
211121210Ribosomal protein L5
333633526Pyridoxal-dependent decarboxylase conserved domain
232332318Citrate synthase, C-terminal domain
555745536GHMP kinases N terminal domain
677656643Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
887868954Pyridoxal-phosphate dependent enzyme
107998101063NUDIX domain
434344426pfkB family carbohydrate kinase
11Glycosyl hydrolases family 28
11Luciferase-like monooxygenase
222222214Ribosomal protein L3
222222214Ribosomal protein L11, RNA binding domain
1211101112101278Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
444444428ATP synthase alpha/beta chain, C terminal domain
544445430Calponin homology (CH) domain
535635330Glutamine amidotransferases class-II
222232215Ribosomal protein S15
11111117Fructose-1-6-bisphosphatase, N-terminal domain
211122211Ribonucleotide reductase, all-alpha domain
212222213Ribosomal protein S2
222222214SRF-type transcription factor (DNA-binding and dimerisation domain)
955776746GATA zinc finger
23101491020995Amino acid permease
122222112Prolyl oligopeptidase family
222132214Ribosomal protein L30p/L7e
843938439Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
444444428Aconitase family (aconitate hydratase)
222332115Glycosyl hydrolases family 17
221222213Ribosomal protein S5, N-terminal domain
11111117Nucleoside diphosphate kinase
221122212Ribosomal protein S10p/S20e
445674838Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
1111116Carbohydrate phosphorylase
211122211SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
322222215Ribosomal protein L6
333333321Polyprenyl synthetase
333223218Hexokinase
443354528Dynamin family
11111117Transcription factor TFIID (or TATA-binding protein, TBP)
211224113Rieske [2Fe-2S] domain
899778755Biotin-requiring enzyme
11112118Phosphofructokinase
222222214Ribosomal protein S17
12111118Hydroxymethylglutaryl-coenzyme A reductase
323333320FGGY family of carbohydrate kinases, N-terminal domain
737446536Enoyl-CoA hydratase/isomerase
222222214Ribosomal protein S9/S16
222322215Transcription factor TFIIB repeat
766468744Cytidine and deoxycytidylate deaminase zinc-binding region
11111117Molybdopterin oxidoreductase
221422215Chromo (CHRromatin Organisation MOdifier) domain
11111117Phosphatidylinositol-specific phospholipase C, Y domain
12112119Phosphatidylinositol-specific phospholipase C, X domain
555885541D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
1111127Malic enzyme, N-terminal domain
111111176-phosphogluconate dehydrogenase, C-terminal domain
411913322Multicopper oxidase
553866437WW domain
222222214Ribosomal RNA adenine dimethylase
112Yeast PIR protein repeat
9992841009210578650WD domain, G-beta repeat
443543427Heavy-metal-associated domain
433334222Adenylate kinase
332233319Phosphoglucomutase/phosphomannomutase, C-terminal domain
122121211Ribosomal protein S8
11111128Ribosomal protein S11
343324221LIM domain
132132214Regulator of chromosome condensation (RCC1) repeat
222122213Ribosomal protein S13/S18
222222214chorismate binding enzyme
43334442560s Acidic ribosomal protein
444444428Prenyltransferase and squalene oxidase repeat
635655333Protein kinase C terminal domain
11111117Single-strand binding protein family
11112118S-adenosylmethionine synthetase, N-terminal domain
998789858Bromodomain
747667643Acyl-CoA dehydrogenase, C-terminal domain
1415121712141296Ubiquitin carboxyl-terminal hydrolase
111115Ribosomal protein L36
11111218Ribonuclease T2 family
323344322HSF-type DNA-binding
222222214SRP54-type protein, GTPase domain
542239631Serine carboxypeptidase
888888755Phosphatidylinositol 3- and 4-kinase
311322113Transketolase, thiamine diphosphate binding domain
222222214Inositol monophosphatase family
632446530Glutaredoxin
222223215Isocitrate lyase family
222122314Serine hydroxymethyltransferase
211116Iron-containing alcohol dehydrogenase
232232317Ribosomal protein L10
634443327KOW motif
11111117Ribosomal protein L34
11Ribosomal protein L33
23233316RF-1 domain
262222218Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
11111117Glucose-6-phosphate dehydrogenase, NAD binding domain
666556640Protein phosphatase 2C
333343423Nucleotidyl transferase
11122119Carbonic anhydrase
321132214Phosphoribulokinase / Uridine kinase family
444644329Fatty acid desaturase
444644430MutS domain V
11111117Delta-aminolevulinic acid dehydratase
415122217Arginase family
666666642MCM P-loop domain
121231212Squalene/phytoene synthase
699976551FHA domain
141516121313790AMP-binding enzyme
233222115G-protein alpha subunit
545668438HMG (high mobility group) box
522515424His Kinase A (phospho-acceptor) domain
232334219Armadillo/beta-catenin-like repeat
231113209186100Tetratricopeptide repeat
513115117Ion transport protein
12111118DNA gyrase/topoisomerase IV, subunit A
95119310855BRCA1 C Terminus (BRCT) domain
444634328Glycosyl transferases group 1
322322216Glycosyl transferase family 2
1111116SAM domain (Sterile alpha motif)
111115linker histone H1 and H5 family
111115Ribosomal protein L7/L12 C-terminal domain
333333321CoA-ligase
343333322Phosphopantetheine attachment site
212222213Formyl transferase
879899959Metallopeptidase family M24
1031112110249Leucine Rich Repeat
2431320714485alpha/beta hydrolase fold
333333321RNA polymerase Rpb2, domain 6
22321212PB1 domain
222222214Staphylococcal nuclease homologue
10117101310970Rab-GTPase-TBC domain
1111116Tudor domain
11111117WH1 domain
322423117Zinc finger, ZZ type
11111117HRDC domain
1199989762CBS domain
221222213Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
1113Clp protease
444453327S1 RNA binding domain
1111116HIUase/Transthyretin family
434543427AhpC/TSA family
444445429tRNA synthetases class I (W and Y)
2211118UvrD/REP helicase N-terminal domain
565475638Rhodanese-like domain
21221210Universal stress protein family
22121125102013113Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
224222216AIR synthase related protein, N-terminal domain
878878753tRNA synthetase class II core domain (G, H, P, S and T)
211122211SpoU rRNA Methylase family
222222113Tetrapyrrole (Corrin/Porphyrin) Methylases
11111128Glycosyl transferase family, a/b domain
21126PDZ domain
211122211Class II Aldolase and Adducin N-terminal domain
232334320Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
643355531Fes/CIP4, and EFC/F-BAR homology domain
322322115IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
212222112Phospholipase D Active site motif
25115115Regulator of G protein signaling domain
333334322GTPase-activator protein for Ras-like GTPase
452444427RasGEF domain
422434322RasGEF N-terminal motif
11958911861RhoGAP domain
464533530RhoGEF domain
324344222SPRY domain
323333320RNA polymerase Rpb1, domain 2
1111116Guanylate kinase
431343220Gelsolin repeat
855658441UBA/TS-N domain
1591114814879PHD-finger
112GGL domain
665676541HECT-domain (ubiquitin-transferase)
1113Helix-hairpin-helix motif
11111117MSP (Major sperm protein) domain
23133315Ribonuclease III domain
242242319Region in Clathrin and VPS
332223318RanBP1 domain
11121118PPIC-type PPIASE domain
1112117Zn-finger in Ran binding protein and others
1271214912874Zinc finger C-x8-C-x5-C-x3-H type (and similar)
11114B-box zinc finger
11Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
392133962155F-box domain
11121118Elongation factor 1 gamma, conserved domain
111115Calpain family cysteine protease
232122214Copper fist DNA binding domain
433544427CRAL/TRIO domain
42253420BTB/POZ domain
22Ricin-type beta-trefoil lectin domain
11111117Inhibitor of Apoptosis domain
333323219Voltage gated chloride channel
1111116Caspase domain
115411GDSL-like Lipase/Acylhydrolase
211112210Poly-adenylate binding protein, unique domain
11111117POLO box duplicated region
8913337131497ABC transporter transmembrane region
11Integrase core domain
344533426FAD binding domain
13116Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1111116HAMP domain
222222214ribosomal L5P family C-terminus
666585541Insulinase (Peptidase family M16)
433223219Dehydrogenase E1 component
11111117Lumazine binding domain
766667644Elongation factor G C-terminus
434444427HMGL-like
434444427DnaJ central domain
232142418Ribosomal protein L1p/L10e family
543845332Cation transporting ATPase, C-terminus
7541066543Cation transporter/ATPase, N-terminus
11114dUTPase
444444428Aconitase C-terminal domain
333343322Amino acid kinase family
11111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
221421214Acyl transferase domain
214119Dihydrodipicolinate synthetase family
2691932112510132haloacid dehalogenase-like hydrolase
3238Glycosyl hydrolases family 2
422524221Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
11Acylphosphatase
11111117Adenylosuccinate synthetase
11Asparaginase, N-terminal
11Interferon gamma
332333320Peptidase S24-like
211122110Inorganic pyrophosphatase
335423222Glycosyl hydrolases family 16
21111118Glycosyl hydrolases family 15
8323410131NADH:flavin oxidoreductase / NADH oxidase family
1112113103-hydroxyacyl-CoA dehydrogenase, C-terminal domain
246Glycosyl hydrolase family 20, catalytic domain
332233319HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
232310GMC oxidoreductase
222222214Asparagine synthase
112Fungal cellulose binding domain
744497843Septin
1111116EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
233232318Flavin-binding monooxygenase-like
333333321tRNA synthetases class I (E and Q), catalytic domain
11111117tRNA synthetases class I (R)
343333423XPG N-terminal domain
534924431Metallo-beta-lactamase superfamily
11114F5/8 type C domain
222243116Choline/Carnitine o-acyltransferase
11111117Putative esterase
11111117Ferrochelatase
322233318Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
11111117Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
453334325RNB domain
426Dioxygenase
343243221CNH domain
112122211Diacylglycerol kinase catalytic domain
775777545Dual specificity phosphatase, catalytic domain
222223215P21-Rho-binding domain
1313101114121184PX domain
32221212Ras association (RalGDS/AF-6) domain
645456434UBX domain
444544429VHS domain
11111117Phosphoinositide 3-kinase C2
222222214DAHP synthetase I family
444854534Carbon-nitrogen hydrolase
11111117Prephenate dehydratase
344423323Syntaxin
11Pentapeptide repeats (8 copies)
444435428Pumilio-family RNA binding repeat
776777647Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
11111117ER lumen protein retaining receptor
222222214tRNA N6-adenosine threonylcarbamoyltransferase
11111117Histidinol dehydrogenase
323423320impB/mucB/samB family
11114
1111116Ribosomal L15
13131312Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
1113Ribosomal prokaryotic L21 protein
11111117Ribosomal L28 family
11111117Ribosomal L29 protein
11111117Ribosomal L39 protein
11121118Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
114111110Translationally controlled tumour protein
11Ring hydroxylating alpha subunit (catalytic domain)
211223112RNA pseudouridylate synthase
554556434Histone deacetylase domain
21148POT family
11111117PWWP domain
12798108458SET domain
312812219Isochorismatase family
111131210Permease family
11111117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
453444529XPG I-region
11Acetokinase family
112DNA photolyase
112Cation-independent mannose-6-phosphate receptor repeat
112Nitroreductase family
1113Zinc dependent phospholipase C
4215113Sulfatase
11111166,7-dimethyl-8-ribityllumazine synthase
111115Ribosomal protein S16
222222214Acyl CoA binding protein
444444327Cullin family
523731122FAD binding domain
11O-methyltransferase domain
163333423EamA-like transporter family
22228
888788855ThiF family
11111117Ribosomal family S4e
222732220Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
222552422Ammonium Transporter Family
333343322Sulfate permease family
1111149MATH domain
313112112Dehydratase family
211213111Transaldolase/Fructose-6-phosphate aldolase
1111116Mechanosensitive ion channel
121122110GTP cyclohydrolase II
111111173,4-dihydroxy-2-butanone 4-phosphate synthase
533455530Adaptor complexes medium subunit family
565666640Exonuclease
11112118Dipeptidyl peptidase IV (DPP IV) N-terminal region
811611027Glycosyl hydrolase family 3 N terminal domain
11111117Ribosomal protein L44