PFAM Domains • Hymenopellis radicata IJFM A160 v1.0
Annotations/GenomesArmme1_1Guyne1Gyman1Gymlu1Hymrad1Marfi1Monpe1_1Ompol1TotalAnnotation Description
PFAMs
8,6488,25811,68910,67411,4129,4185,1716,93972,209
117 transmembrane receptor (rhodopsin family)
4244584257513342369ATPase family associated with various cellular activities (AAA)
6550826067542644448ABC transporter
4454442431ATP synthase alpha/beta family, nucleotide-binding domain
213EGF-like domain
151524171516915126Elongation factor Tu GTP binding domain
131114151415912103Helix-loop-helix DNA-binding domain
97971095763Hsp20/alpha crystallin family
8829923898102Hsp70 protein
7898783757KH domain
11211118SH2 domain
2934313628291527229SH3 domain
131219111515712104Actin
33276211129241327326Ankyrin repeat
2114PAN domain
67781284759ADP-ribosylation factor family
291932393320724203Eukaryotic aspartyl protease
4433342326Cyclic nucleotide-binding domain
111121119Cytochrome c
66131111112565Double-stranded RNA binding motif
202018173819916157EF hand
23132122164Fe-4S binding domain
11111117Fibronectin type III domain
8725131518910105Glutathione S-transferase, C-terminal domain
111121119Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
123Hemopexin
911119181211081Homeodomain
22Laminin EGF domain
3333122320lactate/malate dehydrogenase, NAD binding domain
5597759451Myosin head (motor domain)
2461663192632673122091181,900Cytochrome P450
154158272186261261991231,514Protein kinase domain
171520332518715150Pyridine nucleotide-disulphide oxidoreductase
2225332833281824211Ras family
11101111171051186Response regulator receiver domain
623653681296RNase H
7172797596732968563RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
27139471Reverse transcriptase (RNA-dependent DNA polymerase)
48315Copper/zinc superoxide dismutase (SODC)
2222242319Iron/manganese superoxide dismutases, alpha-hairpin domain
6635697547Subtilase family
4346775468436233426Sugar (and other) transporter
12141212121110992Thioredoxin
55126865552Tubulin/FtsZ family, GTPase domain
331514125254von Willebrand factor type A domain
569796101117741127579Zinc finger, C2H2 type
46677974102621039479Zinc finger, C3HC4 type (RING finger)
19517284736312314391Zinc knuckle
2226112218Protein-tyrosine phosphatase
12295161152143965163883short chain dehydrogenase
4139925971481645411Zinc-binding dehydrogenase
4455645437Thiolase, N-terminal domain
651010646552Beta-ketoacyl synthase, N-terminal domain
23433313222Fe-2S iron-sulfur cluster binding domain
112Papain family cysteine protease
111121119Enolase, C-terminal TIM barrel domain
8797896862Glutamine amidotransferase class-I
111010121010101083TCP-1/cpn60 chaperonin family
54431142437Glutamine synthetase, catalytic domain
111111118Triosephosphate isomerase
12141212151412899E1-E2 ATPase
1618392729151016170Core histone H2A/H2B/H3/H4
432211Copper binding proteins, plastocyanin/azurin family
121118121773989Alpha amylase, catalytic domain
3665862541Phorbol esters/diacylglycerol binding domain (C1 domain)
356512102548Bacterial transferase hexapeptide (six repeats)
5344537334tRNA synthetases class I (I, L, M and V)
61124151812213101Cyclin, N-terminal domain
3333814876514820390Carboxylesterase family
4454542432DNA polymerase family B
3333631325ATP synthase subunit C
10633131268795Peroxidase
12145665241Beta-lactamase
5557984346C-5 cytosine-specific DNA methylase
2527313030321025210Calcineurin-like phosphoesterase
1161416101271086Cellulase (glycosyl hydrolase family 5)
5578568650tRNA synthetases class II (D, K and N)
3242404051444335327Mitochondrial carrier protein
11recA bacterial DNA recombination protein
1416192319201316140Aminotransferase class I and II
6767874651Phosphoribosyl transferase domain
1214172017141011115Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
111211119Phosphoglycerate kinase
121242214Ribosomal protein S4/S9 N-terminal domain
2222222216Ribosomal protein S12/S23
2211111110Chaperonin 10 Kd subunit
141521171818816127C2 domain
172020201620416133PH domain
77581392960bZIP transcription factor
2021223754262315218Aldehyde dehydrogenase family
48113134108118101730659Fungal Zn(2)-Cys(6) binuclear cluster domain
2322322232231018182Cytochrome b5-like Heme/Steroid binding domain
2232432321Oxidoreductase molybdopterin binding domain
881812101131080Oxidoreductase NAD-binding domain
2326282933241924206SNF2 family N-terminal domain
2212232115Ribosomal protein S7p/S5e
2121272528221321178Ubiquitin-conjugating enzyme
5577563644Isocitrate/isopropylmalate dehydrogenase
2232222217Ribosomal Proteins L2, RNA binding domain
2292224225Hsp90 protein
222322215Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111116Dihydrofolate reductase
314Chitin recognition protein
6664875446Cysteine-rich secretory protein family
111111118Ribosomal protein S3, C-terminal domain
63103622234Cupin
1126111215Annexin
1539Eukaryotic-type carbonic anhydrase
33334353272-oxoacid dehydrogenases acyltransferase (catalytic domain)
5435435332Catalase
11113119Disintegrin
2121112113556UDP-glucoronosyl and UDP-glucosyl transferase
6645753541Aminotransferase class-III
222222214Ribosomal protein S19
1122111110DNA gyrase B
3534531327Thiamine pyrophosphate enzyme, central domain
5444351430Lyase
42322222248Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11221119Adenylate and Guanylate cyclase catalytic domain
11111117ATP synthase delta (OSCP) subunit
111121119Orotidine 5'-phosphate decarboxylase / HUMPS family
2222222216Indole-3-glycerol phosphate synthase
3323373226Aromatic amino acid lyase
111111118Pyruvate kinase, barrel domain
12101511998983Kinesin motor domain
2930333133321326227DnaJ domain
141417141615914113Proteasome subunit
6466544338Major intrinsic protein
1122111110ATP synthase
104113337344Glycosyl hydrolase family 1
1111111183'5'-cyclic nucleotide phosphodiesterase
1111311110Profilin
1212121212Ribosomal protein L22p/L17e
1222221214Ribosomal protein L14p/L23e
151822154213414143Ubiquitin family
6555652539Cofilin/tropomyosin-type actin-binding protein
227222122014-3-3 protein
4312434122Alkaline phosphatase
111121119Zinc carboxypeptidase
5039876576513743448Aldo/keto reductase family
101321221515617119Myb-like DNA-binding domain
67581074350Forkhead domain
2215Glycosyl hydrolases family 32 N-terminal domain
11112118Ribosomal protein L16p/L10e
222221213Ribosomal protein S14p/S29e
554464432FKBP-type peptidyl-prolyl cis-trans isomerase
12111118Glutathione peroxidase
11111117
861271082760Flavodoxin
112Protamine P1
1111212110Calreticulin family
117213143546Common central domain of tyrosinase
78712875660Aminotransferase class-V
2265622227Ribonucleotide reductase, small chain
4645865278402749423DEAD/DEAH box helicase
868512098125803483711Helicase conserved C-terminal domain
111115Fructose-bisphosphate aldolase class-I
11111117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222221213Ribosomal protein L23
112321313Pyridoxal-dependent decarboxylase, C-terminal sheet domain
111121119Ribosomal protein L5
5375463437Pyridoxal-dependent decarboxylase conserved domain
3343344327Citrate synthase, C-terminal domain
4566652539GHMP kinases N terminal domain
7666683648Biotin carboxylase, N-terminal domain
1112131111Tryptophan synthase alpha chain
7889151210776Pyridoxal-phosphate dependent enzyme
101518181417612110NUDIX domain
4565751336pfkB family carbohydrate kinase
2116191911848106Glycosyl hydrolases family 28
22172222231Ribosomal protein L3
222222214Ribosomal protein L11, RNA binding domain
51014111086670Histidine phosphatase superfamily (branch 1)
111111118Thymidylate synthase
123Lipoxygenase
4444442430ATP synthase alpha/beta chain, C terminal domain
3555453535Calponin homology (CH) domain
5466678547Glutamine amidotransferases class-II
3222321217Ribosomal protein S15
54911947352Thaumatin family
111121119Fructose-1-6-bisphosphatase, N-terminal domain
1171311217Ribonucleotide reductase, all-alpha domain
2222242218Ribosomal protein S2
2263441224SRF-type transcription factor (DNA-binding and dimerisation domain)
81020221918510112GATA zinc finger
2129413439242220230Amino acid permease
33Bacterial regulatory proteins, crp family
55156733549Prolyl oligopeptidase family
1111212110Ribosomal protein L30p/L7e
99121410135880Histidine phosphatase superfamily (branch 2)
111111118Respiratory-chain NADH dehydrogenase, 30 Kd subunit
5555753540Aconitase family (aconitate hydratase)
64751149450Glycosyl hydrolase family 10
124432218Glycosyl hydrolases family 17
2222121214Ribosomal protein S5, N-terminal domain
2232121215Nucleoside diphosphate kinase
1123119Tetraspanin family
112212211Ribosomal protein S10p/S20e
1222131214Arrestin (or S-antigen), N-terminal domain
111111219Phosphoglucose isomerase
2121114113Carbohydrate phosphorylase
111111118SecY translocase
11211118Respiratory-chain NADH dehydrogenase, 49 Kd subunit
2222622220Ribosomal protein L6
124610665756Polyprenyl synthetase
2222223217Hexokinase
681071371456Dynamin family
111162113Transcription factor TFIID (or TATA-binding protein, TBP)
2253442325Rieske [2Fe-2S] domain
1113Phytochrome region
889910136871Biotin-requiring enzyme
1111113110Phosphofructokinase
1222221113Ribosomal protein S17
11121211120Hydroxymethylglutaryl-coenzyme A reductase
4344432428FGGY family of carbohydrate kinases, N-terminal domain
11Sodium:dicarboxylate symporter family
108101413931077Enoyl-CoA hydratase/isomerase
2222221215Ribosomal protein S9/S16
2322223218Transcription factor TFIIB repeat
310681361350Cytidine and deoxycytidylate deaminase zinc-binding region
111111118Molybdopterin oxidoreductase
6571610316297171Chromo (CHRromatin Organisation MOdifier) domain
333333220Phosphatidylinositol-specific phospholipase C, Y domain
3343432325Phosphatidylinositol-specific phospholipase C, X domain
5696862749D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
323353221Malic enzyme, N-terminal domain
1112111196-phosphogluconate dehydrogenase, C-terminal domain
261925192623188164Multicopper oxidase
11Granulin
101081210122872WW domain
1252221116Ribosomal RNA adenine dimethylase
102113261406162124701141,352WD domain, G-beta repeat
3544231224Heavy-metal-associated domain
3343531325Adenylate kinase
11111218Phosphoglucomutase/phosphomannomutase, C-terminal domain
111111118Ribosomal protein S8
2222331217Ribosomal protein S11
2646662537LIM domain
11Matrixin
4433531528Regulator of chromosome condensation (RCC1) repeat
2222222216Ribosomal protein S13/S18
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
11REV protein (anti-repression trans-activator protein)
2222222317chorismate binding enzyme
334433132460s Acidic ribosomal protein
3444546535Prenyltransferase and squalene oxidase repeat
6687672850Protein kinase C terminal domain
11111117Single-strand binding protein family
111111118S-adenosylmethionine synthetase, N-terminal domain
11101411151061087Bromodomain
11Bacterial regulatory proteins, tetR family
7710119104765Acyl-CoA dehydrogenase, C-terminal domain
161515152315415118Ubiquitin carboxyl-terminal hydrolase
111216Ribosomal protein L36
2233421118Ribonuclease T2 family
55551133441HSF-type DNA-binding
2222221215SRP54-type protein, GTPase domain
111111118Urease alpha-subunit, N-terminal domain
1816221518172112139Serine carboxypeptidase
11Apoptosis regulator proteins, Bcl-2 family
88158874866Phosphatidylinositol 3- and 4-kinase
5413635330Transketolase, thiamine diphosphate binding domain
26411216Glycosyl hydrolases family 11
11114WHEP-TRS domain
4453223326Inositol monophosphatase family
555575537Glutaredoxin
3365884340Isocitrate lyase family
3214121115Serine hydroxymethyltransferase
4733422328Iron-containing alcohol dehydrogenase
111322111Ribosomal protein L10
5555452536KOW motif
111115Ribosomal protein L34
122222213RF-1 domain
144261321Sodium:solute symporter family
1111127Imidazoleglycerol-phosphate dehydratase
11211118DNA polymerase family A
111111219IMP dehydrogenase / GMP reductase domain
1125111315Glucose-6-phosphate dehydrogenase, NAD binding domain
810151319105989Protein phosphatase 2C
2333321219Nucleotidyl transferase
7344942235Carbonic anhydrase
11111117Phosphoribulokinase / Uridine kinase family
15152091910913110Fatty acid desaturase
6697566651MutS domain V
111111118Delta-aminolevulinic acid dehydratase
5655744541Arginase family
66761166654MCM P-loop domain
111111219Squalene/phytoene synthase
911151422741193FHA domain
5646677758543236426AMP-binding enzyme
1915302519261314161G-protein alpha subunit
262125284724414189HMG (high mobility group) box
6788872854His Kinase A (phospho-acceptor) domain
33212322229Armadillo/beta-catenin-like repeat
32311026437311825340Tetratricopeptide repeat
3433332324Ion transport protein
1124111112DNA gyrase/topoisomerase IV, subunit A
11Binding-protein-dependent transport system inner membrane component
81112915106879BRCA1 C Terminus (BRCT) domain
8688673652Glycosyl transferases group 1
444664331Glycosyl transferase family 2
122222213SAM domain (Sterile alpha motif)
443443325linker histone H1 and H5 family
111111118Ribosomal protein L7/L12 C-terminal domain
523837129Pectate lyase
1213311113ribonuclease
111111118Urease, gamma subunit
3344433327CoA-ligase
131224161212614109Phosphopantetheine attachment site
2322221115Formyl transferase
991110141281083Metallopeptidase family M24
81217202116615115Leucine Rich Repeat
5949735467622337424alpha/beta hydrolase fold
3333333324RNA polymerase Rpb2, domain 6
5564463437PB1 domain
2222221215Staphylococcal nuclease homologue
711111312112976Rab-GTPase-TBC domain
111111118Tudor domain
1111116WH1 domain
3544451329Zinc finger, ZZ type
11112118HRDC domain
7101081094866CBS domain
2222222216Ribosomal protein L13
2222521218Ribosomal protein L4/L1 family
1111116Clp protease
236343324S1 RNA binding domain
21111118HIUase/Transthyretin family
87910554654AhpC/TSA family
5454344433tRNA synthetases class I (W and Y)
1111116UvrD/REP helicase N-terminal domain
36467101441Rhodanese-like domain
2222221215Universal stress protein family
222755405936920268Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
2222221215AIR synthase related protein, N-terminal domain
7676662646tRNA synthetase class II core domain (G, H, P, S and T)
112Phage integrase family
2344231322Tetrapyrrole (Corrin/Porphyrin) Methylases
1122121111Glycosyl transferase family, a/b domain
23106153232Class II Aldolase and Adducin N-terminal domain
3444642431Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
6666664545Fes/CIP4, and EFC/F-BAR homology domain
4343441326IQ calmodulin-binding motif
2272221220Phosphoinositide 3-kinase family, accessory domain (PIK domain)
3344431325Phospholipase D Active site motif
1121211110Regulator of G protein signaling domain
3446442431GTPase-activator protein for Ras-like GTPase
7696773651RasGEF domain
7777872752RasGEF N-terminal motif
13111211151471194RhoGAP domain
141519191520413119RhoGEF domain
4454543332SPRY domain
3385332330RNA polymerase Rpb1, domain 2
11111117Guanylate kinase
4434441428Gelsolin repeat
98791094965UBA/TS-N domain
121621172419314126PHD-finger
1113GGL domain
5556554540HECT-domain (ubiquitin-transferase)
3211221113Helix-hairpin-helix motif
111142111MSP (Major sperm protein) domain
681010473553Ribonuclease III domain
22142221227Region in Clathrin and VPS
3333431222RanBP1 domain
221232214PPIC-type PPIASE domain
233433321Zn-finger in Ran binding protein and others
242930282925719191Zinc finger C-x8-C-x5-C-x3-H type (and similar)
111115B-box zinc finger
34125454340Poly(ADP-ribose) polymerase catalytic domain
1252231117Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
9712624618538317426471,284F-box domain
1141211112Elongation factor 1 gamma, conserved domain
1212245219Calpain family cysteine protease
2333213Copper fist DNA binding domain
57937787888CRAL/TRIO domain
1913111021111793BTB/POZ domain
41746402367Ricin-type beta-trefoil lectin domain
11111117Inhibitor of Apoptosis domain
2333333323Voltage gated chloride channel
9529132016926190Caspase domain
88121115103572GDSL-like Lipase/Acylhydrolase
212221212Poly-adenylate binding protein, unique domain
11211118POLO box duplicated region
2119463029301521211ABC transporter transmembrane region
659417122Integrase core domain
4464572537FAD binding domain
11104322326Condensation domain
111111118S-adenosyl-L-homocysteine hydrolase, NAD binding domain
331241115HAMP domain
2222321216ribosomal L5P family C-terminus
5596472543Insulinase (Peptidase family M16)
4444542431Dehydrogenase E1 component
111111219Lumazine binding domain
77138773759Elongation factor G C-terminus
5545564539HMGL-like
2444441427DnaJ central domain
3344332325Starch binding domain
4322321219Ribosomal protein L1p/L10e family
6745787448Cation transporting ATPase, C-terminus
67776103551Cation transporter/ATPase, N-terminus
11111117dUTPase
5565552538Aconitase C-terminal domain
2333633326Amino acid kinase family
11111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
851612847565Acyl transferase domain
11111117Urease beta subunit
364323324Dihydrodipicolinate synthetase family
3336353630351524244haloacid dehalogenase-like hydrolase
2233233321Glycosyl hydrolases family 2
121115132717159119Glycosyl hydrolases family 18
11111218Proliferating cell nuclear antigen, N-terminal domain
2111212111Adenylosuccinate synthetase
11111117Asparaginase, N-terminal
11Beta defensin
2323332119Peptidase S24-like
11211118Inorganic pyrophosphatase
6510101282659Glycosyl hydrolases family 16
5364523331Glycosyl hydrolases family 15
3716582727121916212NADH:flavin oxidoreductase / NADH oxidase family
11121173-hydroxyacyl-CoA dehydrogenase, C-terminal domain
2234722325Glycosyl hydrolase family 20, catalytic domain
4555541433HhH-GPD superfamily base excision DNA repair protein
111111118AIR carboxylase
5839487162705423425GMC oxidoreductase
1222245220Asparagine synthase
1093432219315133Fungal cellulose binding domain
67771274656Septin
11112118EF-1 guanine nucleotide exchange domain
111111118Homoserine dehydrogenase
4677481340Flavin-binding monooxygenase-like
11LPXTG cell wall anchor motif
3343431324tRNA synthetases class I (E and Q), catalytic domain
1121211110tRNA synthetases class I (R)
55551262545XPG N-terminal domain
13131618191359106Metallo-beta-lactamase superfamily
12111118F5/8 type C domain
6544545437Choline/Carnitine o-acyltransferase
111111118Putative esterase
111111219Glycosyl hydrolase family 9
111111118Ferrochelatase
2222221215Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
111111219Arginosuccinate synthase
111111118Electron transfer flavoprotein FAD-binding domain
3334433326RNB domain
221645762567Dioxygenase
34811471442CNH domain
122222213Diacylglycerol kinase catalytic domain
111315121915811104Dual specificity phosphatase, catalytic domain
11111117MyTH4 domain
4543541329P21-Rho-binding domain
111517141414513103PX domain
333823325Ras association (RalGDS/AF-6) domain
4444541329UBX domain
4545