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PFAM Domains • Xylaria arbuscula FL1030 v1.0
Annotations/GenomesAntav1Bisnum1DalEC12_1Entma1HypEC38_3XylarbFL1030Xylhyp1TotalAnnotation Description
PFAMs
10,48610,3948,53210,2119,14912,27711,45972,508
1127 transmembrane receptor (rhodopsin family)
112267 transmembrane receptor (Secretin family)
88545350586962434ATPase family associated with various cellular activities (AAA)
49384338474445304ABC transporter
444444428ATP synthase alpha/beta family, nucleotide-binding domain
14151415141515102Elongation factor Tu GTP binding domain
138101110101173Helix-loop-helix DNA-binding domain
222122112Hsp20/alpha crystallin family
8107117131571Hsp70 protein
878796752KH domain
1113SH2 domain
27122612251311126SH3 domain
9101099101067Actin
172256616895232452Ankyrin repeat
213122112PAN domain
788787752ADP-ribosylation factor family
22221722162221142Eukaryotic aspartyl protease
444444428Cyclic nucleotide-binding domain
112Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
11111117Cytochrome c
11Double-stranded RNA binding motif
172193182263EF hand
11134Fe-4S binding domain
212121110Fibronectin type III domain
222232215Globin
2081515191511103Glutathione S-transferase, C-terminal domain
21111129Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
858585544Homeodomain
322223216lactate/malate dehydrogenase, NAD binding domain
444454429Myosin head (motor domain)
2381221181291602001941,161Cytochrome P450
1811151131331251691741,010Protein kinase domain
19131714141718112Pyridine nucleotide-disulphide oxidoreductase
28282527263030194Ras family
1311131012141487Response regulator receiver domain
1252646742RNase H
60515957605649392RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
232323318Copper/zinc superoxide dismutase (SODC)
222222214Iron/manganese superoxide dismutases, alpha-hairpin domain
17252018212221144Subtilase family
59785953697659453Sugar (and other) transporter
1312111213131286Thioredoxin
4215214Trypsin
564456535Tubulin/FtsZ family, GTPase domain
514414von Willebrand factor type A domain
91236325702729328Zinc finger, C2H2 type
5474374585169Zinc finger, C3HC4 type (RING finger)
10311163337Zinc knuckle
222222214Protein-tyrosine phosphatase
2001151471171701791611,089short chain dehydrogenase
99536352717975492Zinc-binding dehydrogenase
665656640Thiolase, N-terminal domain
69342833374757305Beta-ketoacyl synthase, N-terminal domain
7485754402Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
11111117Enolase, C-terminal TIM barrel domain
112Cytochrome C and Quinol oxidase polypeptide I
119811891066Glutamine amidotransferase class-I
1010101010101070TCP-1/cpn60 chaperonin family
11ATP synthase A chain
444354327Glutamine synthetase, catalytic domain
222222214Triosephosphate isomerase
15211819182020131E1-E2 ATPase
1288888860Core histone H2A/H2B/H3/H4
11Copper binding proteins, plastocyanin/azurin family
674443533Alpha amylase, catalytic domain
222222214Phorbol esters/diacylglycerol binding domain (C1 domain)
777875849Bacterial transferase hexapeptide (six repeats)
453636532tRNA synthetases class I (I, L, M and V)
1076868853Cyclin, N-terminal domain
27181914181722135Carboxylesterase family
444544429DNA polymerase family B
645455534ATP synthase subunit C
555667640Peroxidase
1871015131918100Beta-lactamase
443334425C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
28232624252727180Calcineurin-like phosphoesterase
10151217121717100Cellulase (glycosyl hydrolase family 5)
878787752tRNA synthetases class II (D, K and N)
38373837393939267Mitochondrial carrier protein
1113recA bacterial DNA recombination protein
19181621151921129Aminotransferase class I and II
868575443Phosphoribosyl transferase domain
1010101010101070Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11215Ribosome inactivating protein
11111117Phosphoglycerate kinase
222222214Ribosomal protein S4/S9 N-terminal domain
222222214Ribosomal protein S12/S23
1111116Bacterial regulatory helix-turn-helix proteins, AraC family
11111117Chaperonin 10 Kd subunit
1311121012101078C2 domain
188198188988PH domain
11171015102017100bZIP transcription factor
20201822182523146Aldehyde dehydrogenase family
2321561701501962281901,322Fungal Zn(2)-Cys(6) binuclear cluster domain
25242323242525169Cytochrome b5-like Heme/Steroid binding domain
424333322Oxidoreductase molybdopterin binding domain
17121814181817114Oxidoreductase NAD-binding domain
33272626313531209SNF2 family N-terminal domain
222212213Ribosomal protein S7p/S5e
23212122212122151Ubiquitin-conjugating enzyme
7867610751Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
11111117Hsp90 protein
222222214Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
546157331Chitin recognition protein
223232317Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
444343325Cupin
223131113Annexin
11111117Eukaryotic-type carbonic anhydrase
211212211Chalcone and stilbene synthases, N-terminal domain
3333333212-oxoacid dehydrogenases acyltransferase (catalytic domain)
547382534Catalase
11111117Disintegrin
14215316UDP-glucoronosyl and UDP-glucosyl transferase
9117688756Aminotransferase class-III
232232216Ribosomal protein S19
11111117DNA gyrase B
744455433Thiamine pyrophosphate enzyme, central domain
453333324Lyase
222322215Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1113Sodium:neurotransmitter symporter family
11111117Adenylate and Guanylate cyclase catalytic domain
11111117ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
11111117Indole-3-glycerol phosphate synthase
2122119Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
1212121112121384Kinesin motor domain
31362628303230213DnaJ domain
1413141414141497Proteasome subunit
23422316Major intrinsic protein
11111117ATP synthase
111122210Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
11111117Profilin
121212211Ribosomal protein L22p/L17e
232222215Ribosomal protein L14p/L23e
1110910109968Ubiquitin family
555555535Cofilin/tropomyosin-type actin-binding protein
23232331814-3-3 protein
525252223Alkaline phosphatase
655656639Zinc carboxypeptidase
39323427364133242Aldo/keto reductase family
1571271710674Myb-like DNA-binding domain
844443330Forkhead domain
22113110Glycosyl hydrolases family 32 N-terminal domain
121212211Ribosomal protein L16p/L10e
322222215Ribosomal protein S14p/S29e
433333322FKBP-type peptidyl-prolyl cis-trans isomerase
11111117Glutathione peroxidase
3227
857678748Flavodoxin
11111117Calreticulin family
1491298131479Common central domain of tyrosinase
119111210111175Aminotransferase class-V
11111117Ribonucleotide reductase, small chain
41454544424647310DEAD/DEAH box helicase
93757870808280558Helicase conserved C-terminal domain
11111117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222214Ribosomal protein L23
11111117Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11211118Ribosomal protein L5
776768849Pyridoxal-dependent decarboxylase conserved domain
853436635Citrate synthase, C-terminal domain
555555535GHMP kinases N terminal domain
867666645Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
1011111112141180Pyridoxal-phosphate dependent enzyme
24181917202416138NUDIX domain
766868849pfkB family carbohydrate kinase
7637311744Glycosyl hydrolases family 28
32229Luciferase-like monooxygenase
222222214Ribosomal protein L3
222122213Ribosomal protein L11, RNA binding domain
18191617181716121Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
4413315Lipoxygenase
444444428ATP synthase alpha/beta chain, C terminal domain
554554533Calponin homology (CH) domain
524363225Glutamine amidotransferases class-II
221222213Ribosomal protein S15
21111118Thaumatin family
222222214Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
221222213Ribosomal protein S2
312222214SRF-type transcription factor (DNA-binding and dimerisation domain)
666766643GATA zinc finger
34163312371815165Amino acid permease
665658743Prolyl oligopeptidase family
222122213Ribosomal protein L30p/L7e
6710695548Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
645446534Aconitase family (aconitate hydratase)
323232217Glycosyl hydrolase family 10
424142219Glycosyl hydrolases family 17
222222214Ribosomal protein S5, N-terminal domain
11111117Nucleoside diphosphate kinase
11125Tetraspanin family
121212211Ribosomal protein S10p/S20e
333423321Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
11111117SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222214Ribosomal protein L6
1033535433Polyprenyl synthetase
445355531Hexokinase
11158129151787Dynamin family
31111119Transcription factor TFIID (or TATA-binding protein, TBP)
776768546Rieske [2Fe-2S] domain
1111116Phytochrome region
314Proton-conducting membrane transporter
989887756Biotin-requiring enzyme
11111117Phosphofructokinase
122221111Ribosomal protein S17
11111117Hydroxymethylglutaryl-coenzyme A reductase
333333220FGGY family of carbohydrate kinases, N-terminal domain
16881110121277Enoyl-CoA hydratase/isomerase
222222214Ribosomal protein S9/S16
222222214Transcription factor TFIIB repeat
898798958Cytidine and deoxycytidylate deaminase zinc-binding region
11111117Molybdopterin oxidoreductase
1269576651Chromo (CHRromatin Organisation MOdifier) domain
444444428Phosphatidylinositol-specific phospholipase C, Y domain
555656638Phosphatidylinositol-specific phospholipase C, X domain
81296711962D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
222222214Malic enzyme, N-terminal domain
2221221126-phosphogluconate dehydrogenase, C-terminal domain
14148129151385Multicopper oxidase
1111109109969WW domain
121121210Ribosomal RNA adenine dimethylase
1113Yeast PIR protein repeat
122106103106108111108764WD domain, G-beta repeat
454464431Heavy-metal-associated domain
573638638Adenylate kinase
222222214Phosphoglucomutase/phosphomannomutase, C-terminal domain
121223314Ribosomal protein S8
222222214Ribosomal protein S11
444444428LIM domain
112Matrixin
242643526Regulator of chromosome condensation (RCC1) repeat
222222214Ribosomal protein S13/S18
322422318chorismate binding enzyme
33333332160s Acidic ribosomal protein
444444529Prenyltransferase and squalene oxidase repeat
646564536Protein kinase C terminal domain
11111117Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
988989859Bromodomain
1296119121372Acyl-CoA dehydrogenase, C-terminal domain
1413141314131394Ubiquitin carboxyl-terminal hydrolase
11111117Ribosomal protein L36
422425524Ribonuclease T2 family
333333220HSF-type DNA-binding
222323317SRP54-type protein, GTPase domain
11111117Urease alpha-subunit, N-terminal domain
1079887756Serine carboxypeptidase
888888856Phosphatidylinositol 3- and 4-kinase
121213212Transketolase, thiamine diphosphate binding domain
1023323528Glycosyl hydrolases family 11
433434425Inositol monophosphatase family
444444428Glutaredoxin
525242222Isocitrate lyase family
222222214Serine hydroxymethyltransferase
224143319Iron-containing alcohol dehydrogenase
222222214Ribosomal protein L10
424444325KOW motif
11114Ribosomal protein L34
11114Ribosomal protein L33
333333321RF-1 domain
223242217Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
11111117Glucose-6-phosphate dehydrogenase, NAD binding domain
766666744Protein phosphatase 2C
222222214Nucleotidyl transferase
633335427Carbonic anhydrase
111212210Phosphoribulokinase / Uridine kinase family
785556743Fatty acid desaturase
666666642MutS domain V
11121118Delta-aminolevulinic acid dehydratase
544344428Arginase family
666666642MCM P-loop domain
232323318Squalene/phytoene synthase
91010101010968FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
79474351476859394AMP-binding enzyme
533444427G-protein alpha subunit
198810811973HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
1071089111065His Kinase A (phospho-acceptor) domain
333333321Armadillo/beta-catenin-like repeat
32112613261512135Tetratricopeptide repeat
334243322Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
10796118657BRCA1 C Terminus (BRCT) domain
656364434Glycosyl transferases group 1
423242219Glycosyl transferase family 2
131111210SAM domain (Sterile alpha motif)
11111117linker histone H1 and H5 family
11111117Ribosomal protein L7/L12 C-terminal domain
751716431Pectate lyase
433233321ribonuclease
11111117Urease, gamma subunit
444444428CoA-ligase
60372042316666322Phosphopantetheine attachment site
333423321Formyl transferase
9109119131273Metallopeptidase family M24
133153162254Leucine Rich Repeat
57103811511515197alpha/beta hydrolase fold
333333321RNA polymerase Rpb2, domain 6
444434427PB1 domain
222222214Staphylococcal nuclease homologue
9129129121275Rab-GTPase-TBC domain
11111117Tudor domain
11111117WH1 domain
443536328Zinc finger, ZZ type
222122213HRDC domain
968696650CBS domain
222222214Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
11111117Clp protease
445454430S1 RNA binding domain
11111117HIUase/Transthyretin family
535363328AhpC/TSA family
444444428tRNA synthetases class I (W and Y)
121116UvrD/REP helicase N-terminal domain
5879510852Rhodanese-like domain
222222214Universal stress protein family
56284128403733263Acetyltransferase (GNAT) family
11111117SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
222222214AIR synthase related protein, N-terminal domain
878887955tRNA synthetase class II core domain (G, H, P, S and T)
11111117SpoU rRNA Methylase family
222223215Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
1113PDZ domain
543437632Class II Aldolase and Adducin N-terminal domain
444444428Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
555555535Fes/CIP4, and EFC/F-BAR homology domain
524252222IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
535362226Phospholipase D Active site motif
151414420Regulator of G protein signaling domain
444444428GTPase-activator protein for Ras-like GTPase
443444427RasGEF domain
443444427RasGEF N-terminal motif
1099999964RhoGAP domain
666666642RhoGEF domain
333335323SPRY domain
333333321RNA polymerase Rpb1, domain 2
322323318Guanylate kinase
544344428Gelsolin repeat
646464535UBA/TS-N domain
178171517111499PHD-finger
11111117GGL domain
666666642HECT-domain (ubiquitin-transferase)
212121110Helix-hairpin-helix motif
11111117MSP (Major sperm protein) domain
534353427Ribonuclease III domain
242324421Region in Clathrin and VPS
322333319RanBP1 domain
222222214PPIC-type PPIASE domain
334232219Zn-finger in Ran binding protein and others
1810178188887Zinc finger C-x8-C-x5-C-x3-H type (and similar)
423233320Poly(ADP-ribose) polymerase catalytic domain
11111117Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
5912669661317242F-box domain
11111117Elongation factor 1 gamma, conserved domain
434445529Calpain family cysteine protease
112222212Copper fist DNA binding domain
865858747CRAL/TRIO domain
1093125141063BTB/POZ domain
222132214Ricin-type beta-trefoil lectin domain
11111128Inhibitor of Apoptosis domain
333333321Voltage gated chloride channel
835269437Caspase domain
18715715131287GDSL-like Lipase/Acylhydrolase
11111117Poly-adenylate binding protein, unique domain
29192220232623162ABC transporter transmembrane region
677578949FAD binding domain
3410913111614107Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11111117HAMP domain
222222214ribosomal L5P family C-terminus
555656638Insulinase (Peptidase family M16)
333333321Dehydrogenase E1 component
11111117Lumazine binding domain
566665640Elongation factor G C-terminus
546544432HMGL-like
444444428DnaJ central domain
11Sulfotransferase domain
322334421Starch binding domain
233323319Ribosomal protein L1p/L10e family
798779855Cation transporting ATPase, C-terminus
9101191010968Cation transporter/ATPase, N-terminus
11121118dUTPase
645446635Aconitase C-terminal domain
444444428Amino acid kinase family
11111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
66322833394860306Acyl transferase domain
11111117Urease beta subunit
685658644Dihydrodipicolinate synthetase family
35173515381715172haloacid dehalogenase-like hydrolase
866978953Glycosyl hydrolases family 2
24131616172220128Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
112116Translation initiation factor IF-3, C-terminal domain
11111117Acylphosphatase
312122213Adenylosuccinate synthetase
12112119Asparaginase, N-terminal
313233318Peptidase S24-like
11111117Inorganic pyrophosphatase
14191315131716107Glycosyl hydrolases family 16
322323318Glycosyl hydrolases family 15
1079688856NADH:flavin oxidoreductase / NADH oxidase family
111112183-hydroxyacyl-CoA dehydrogenase, C-terminal domain
333323320Glycosyl hydrolase family 20, catalytic domain
564667741HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
34302828344235231GMC oxidoreductase
332222216Asparagine synthase
2266127201790Fungal cellulose binding domain
565656639Septin
11111117EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
383242123Flavin-binding monooxygenase-like
11LPXTG cell wall anchor motif
533333424tRNA synthetases class I (E and Q), catalytic domain
311122111tRNA synthetases class I (R)
444344427XPG N-terminal domain
12676107654Metallo-beta-lactamase superfamily
1111116F5/8 type C domain
432325423Choline/Carnitine o-acyltransferase
212221111Putative esterase
11111117Ferrochelatase
222222214Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
111212412Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
333333321RNB domain
81177713861Dioxygenase
333333321CNH domain
222222214Diacylglycerol kinase catalytic domain
877777750Dual specificity phosphatase, catalytic domain
322233217P21-Rho-binding domain
1312131311131388PX domain
323233218Ras association (RalGDS/AF-6) domain
545455432UBX domain
444444428VHS domain
11111117Phosphoinositide 3-kinase C2
222222315DAHP synthetase I family
9121191110971Carbon-nitrogen hydrolase
2111229N-acetyltransferase
11Geminivirus Rep catalytic domain
11111117Prephenate dehydratase
444444428Syntaxin
545454431Pumilio-family RNA binding repeat
676777747Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
222222214ER lumen protein retaining receptor
322222215tRNA N6-adenosine threonylcarbamoyltransferase
11212119Histidinol dehydrogenase
444444428impB/mucB/samB family
1113
11111117Ribosomal L15
131414418Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
11111117Ribosomal L28 family
11111117Ribosomal L29 protein
11111117Ribosomal L39 protein
11111117Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
745555536Glycosyl hydrolase family 7
21216Ring hydroxylating alpha subunit (catalytic domain)
11111117RNA pseudouridylate synthase
444444428Histone deacetylase domain
646644535POT family