PFAM Domains • Neocosmospora boninensis NRRL 22470 v1.0
Annotations/GenomesFusso1FusspF10_1FusspF11_1FusspF23_1Necha2Neobo1TotalAnnotation Description
PFAMs
16,25211,24415,69515,88310,14215,60284,818
1127 transmembrane receptor (rhodopsin family)
41645207 transmembrane receptor (Secretin family)
595163655369360ATPase family associated with various cellular activities (AAA)
825475757671433ABC transporter
74444629ATP synthase alpha/beta family, nucleotide-binding domain
15151515141589Elongation factor Tu GTP binding domain
14131512121581Helix-loop-helix DNA-binding domain
42323418Hsp20/alpha crystallin family
1813131671279Hsp70 protein
77778945KH domain
11SH2 domain
13141214231490SH3 domain
1110101071058Actin
5127555913154377Ankyrin repeat
9381017754PAN domain
98998952ADP-ribosylation factor family
211821231820121Eukaryotic aspartyl protease
44444626Cyclic nucleotide-binding domain
1111116Cytochrome c
1113Double-stranded RNA binding motif
222221231EF hand
114Fe-4S binding domain
1111318Fibronectin type III domain
32422417Globin
191120191816103Glutathione S-transferase, C-terminal domain
1111116Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
555512537Homeodomain
42333419lactate/malate dehydrogenase, NAD binding domain
54555529Myosin head (motor domain)
15681152167142154852Cytochrome P450
1811701892191492001,108Protein kinase domain
251723232421133Pyridine nucleotide-disulphide oxidoreductase
312830302529173Ras family
191616161518100Response regulator receiver domain
33546627RNase H
535452545852323RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
43333420Copper/zinc superoxide dismutase (SODC)
32222213Iron/manganese superoxide dismutases, alpha-hairpin domain
342336442933199Subtilase family
2181042032032471981,173Sugar (and other) transporter
15141515141487Thioredoxin
22223213Trypsin
106777744Tubulin/FtsZ family, GTPase domain
121318von Willebrand factor type A domain
3723333112431279Zinc finger, C2H2 type
776838672Zinc finger, C3HC4 type (RING finger)
23436422Zinc knuckle
22222212Protein-tyrosine phosphatase
241932252502591971,265short chain dehydrogenase
11850121129155102675Zinc-binding dehydrogenase
95788744Thiolase, N-terminal domain
181416191520102Beta-ketoacyl synthase, N-terminal domain
534464262Fe-2S iron-sulfur cluster binding domain
21222211Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
13101614121479Glutamine amidotransferase class-I
1011101091060TCP-1/cpn60 chaperonin family
44444424Glutamine synthetase, catalytic domain
22222212Triosephosphate isomerase
372935352836200E1-E2 ATPase
989108953Core histone H2A/H2B/H3/H4
77878845Alpha amylase, catalytic domain
22222212Phorbol esters/diacylglycerol binding domain (C1 domain)
67879744Bacterial transferase hexapeptide (six repeats)
55657533tRNA synthetases class I (I, L, M and V)
13810912961Cyclin, N-terminal domain
481846584546261Carboxylesterase family
44444424DNA polymerase family B
55555530ATP synthase subunit C
44554426Peroxidase
391836323536196Beta-lactamase
22222212C-5 cytosine-specific DNA methylase
302831313131182Calcineurin-like phosphoesterase
18131818141697Cellulase (glycosyl hydrolase family 5)
97777744tRNA synthetases class II (D, K and N)
514046514748283Mitochondrial carrier protein
372136382538195Aminotransferase class I and II
857412541Phosphoribosyl transferase domain
11101010101162Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111116Phosphoglycerate kinase
22222212Ribosomal protein S4/S9 N-terminal domain
22222212Ribosomal protein S12/S23
2122119Bacterial regulatory helix-turn-helix proteins, AraC family
1111116Chaperonin 10 Kd subunit
16121112161279C2 domain
999917962PH domain
291317181125113bZIP transcription factor
822977666568387Aldehyde dehydrogenase family
6112865745644785673,080Fungal Zn(2)-Cys(6) binuclear cluster domain
392437353538208Cytochrome b5-like Heme/Steroid binding domain
64445831Oxidoreductase molybdopterin binding domain
291628282533159Oxidoreductase NAD-binding domain
332537363332196SNF2 family N-terminal domain
22222212Ribosomal protein S7p/S5e
212121212021125Ubiquitin-conjugating enzyme
128101091059Isocitrate/isopropylmalate dehydrogenase
22222111Ribosomal Proteins L2, RNA binding domain
1111116Hsp90 protein
22222212Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111116Dihydrofolate reductase
95104121252Chitin recognition protein
55554529Cysteine-rich secretory protein family
1111116Ribosomal protein S3, C-terminal domain
961196849Cupin
33333318Annexin
32222314Eukaryotic-type carbonic anhydrase
1122219Chalcone and stilbene synthases, N-terminal domain
545644282-oxoacid dehydrogenases acyltransferase (catalytic domain)
88988950Catalase
32333317Disintegrin
1611151411471UDP-glucoronosyl and UDP-glucosyl transferase
231219201918111Aminotransferase class-III
22222212Ribosomal protein S19
1111116DNA gyrase B
134127101561Thiamine pyrophosphate enzyme, central domain
63665733Lyase
32222314Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
32223416Sodium:neurotransmitter symporter family
11Ferritin-like domain
1111116Adenylate and Guanylate cyclase catalytic domain
3111129ATP synthase delta (OSCP) subunit
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
1111116Indole-3-glycerol phosphate synthase
1111116Aromatic amino acid lyase
1111116Pyruvate kinase, barrel domain
11111212111269Kinesin motor domain
282828292828169DnaJ domain
14141414141484Proteasome subunit
55555631Major intrinsic protein
1111116ATP synthase
94675536Glycosyl hydrolase family 1
11111163'5'-cyclic nucleotide phosphodiesterase
1111116Profilin
22221211Ribosomal protein L22p/L17e
22222212Ribosomal protein L14p/L23e
12101313111170Ubiquitin family
65653530Cofilin/tropomyosin-type actin-binding protein
8353242514-3-3 protein
22225215Alkaline phosphatase
77677842Zinc carboxypeptidase
543056585447299Aldo/keto reductase family
989812854Myb-like DNA-binding domain
44444424Forkhead domain
74676535Glycosyl hydrolases family 32 N-terminal domain
22221211Ribosomal protein L16p/L10e
22221211Ribosomal protein S14p/S29e
33333318FKBP-type peptidyl-prolyl cis-trans isomerase
1111116Glutathione peroxidase
22
11Dehydrin
1471312131372Flavodoxin
11Protamine P1
1111116Calreticulin family
1069951049Common central domain of tyrosinase
139121351264Aminotransferase class-V
1111116Ribonucleotide reductase, small chain
474252445650291DEAD/DEAH box helicase
817188798784490Helicase conserved C-terminal domain
1111116EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22222212Ribosomal protein L23
1111116Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1121218Ribosomal protein L5
10810910956Pyridoxal-dependent decarboxylase conserved domain
34443321Citrate synthase, C-terminal domain
55555530GHMP kinases N terminal domain
1079109954Biotin carboxylase, N-terminal domain
1121128Tryptophan synthase alpha chain
211624212323128Pyridoxal-phosphate dependent enzyme
11'Paired box' domain
171617171817102NUDIX domain
75874839pfkB family carbohydrate kinase
11610119956Glycosyl hydrolases family 28
11511111948Luciferase-like monooxygenase
22222212Ribosomal protein L3
22222212Ribosomal protein L11, RNA binding domain
17141717131795Histidine phosphatase superfamily (branch 1)
1111116Thymidylate synthase
32222213Lipoxygenase
74444629ATP synthase alpha/beta chain, C terminal domain
45555529Calponin homology (CH) domain
23224316Glutamine amidotransferases class-II
22222212Ribosomal protein S15
1111127Thaumatin family
22222212Fructose-1-6-bisphosphatase, N-terminal domain
1111116Ribonucleotide reductase, all-alpha domain
22222212Ribosomal protein S2
22222212SRF-type transcription factor (DNA-binding and dimerisation domain)
106768744GATA zinc finger
482844448757308Amino acid permease
10510861554Prolyl oligopeptidase family
22221211Ribosomal protein L30p/L7e
1010101081159Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
115888747Aconitase family (aconitate hydratase)
41343419Glycosyl hydrolase family 10
33232316Glycosyl hydrolases family 17
22222212Ribosomal protein S5, N-terminal domain
1111116Nucleoside diphosphate kinase
111216Tetraspanin family
22222212Ribosomal protein S10p/S20e
84565634Arrestin (or S-antigen), N-terminal domain
1111116Phosphoglucose isomerase
1111116Carbohydrate phosphorylase
1111116SecY translocase
1111116Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222212Ribosomal protein L6
33343319Polyprenyl synthetase
44454425Hexokinase
1411111391371Dynamin family
1111116Transcription factor TFIID (or TATA-binding protein, TBP)
1281213141372Rieske [2Fe-2S] domain
111115Phytochrome region
1310111491168Biotin-requiring enzyme
1111116Phosphofructokinase
22222212Ribosomal protein S17
21311210Hydroxymethylglutaryl-coenzyme A reductase
44444424FGGY family of carbohydrate kinases, N-terminal domain
1111116Sodium:dicarboxylate symporter family
251326242322133Enoyl-CoA hydratase/isomerase
22222212Ribosomal protein S9/S16
22222212Transcription factor TFIIB repeat
67878743Cytidine and deoxycytidylate deaminase zinc-binding region
1111116Molybdopterin oxidoreductase
177101141160Chromo (CHRromatin Organisation MOdifier) domain
114767641Phosphatidylinositol-specific phospholipase C, Y domain
1261099753Phosphatidylinositol-specific phospholipase C, X domain
19131819141497D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
22222212Malic enzyme, N-terminal domain
123PEP-utilising enzyme, mobile domain
31111296-phosphogluconate dehydrogenase, C-terminal domain
1491316121377Multicopper oxidase
13111213111171WW domain
1212129Ribosomal RNA adenine dimethylase
124111120119126134734WD domain, G-beta repeat
85988846Heavy-metal-associated domain
44464426Adenylate kinase
22222212Phosphoglucomutase/phosphomannomutase, C-terminal domain
32332215Ribosomal protein S8
22332214Ribosomal protein S11
65675433LIM domain
112Matrixin
33232316Regulator of chromosome condensation (RCC1) repeat
22222212Ribosomal protein S13/S18
23222213chorismate binding enzyme
3333331860s Acidic ribosomal protein
54555529Prenyltransferase and squalene oxidase repeat
54554528Protein kinase C terminal domain
1111116Single-strand binding protein family
1111116S-adenosylmethionine synthetase, N-terminal domain
981088851Bromodomain
1391519141181Acyl-CoA dehydrogenase, C-terminal domain
12131313151379Ubiquitin carboxyl-terminal hydrolase
1111116Ribosomal protein L36
1122219Ribonuclease T2 family
33333318HSF-type DNA-binding
22222212SRP54-type protein, GTPase domain
1111116Urease alpha-subunit, N-terminal domain
191019161719100Serine carboxypeptidase
88888848Phosphatidylinositol 3- and 4-kinase
82575431Transketolase, thiamine diphosphate binding domain
32333317Glycosyl hydrolases family 11
55555530Inositol monophosphatase family
44443423Glutaredoxin
22334216Isocitrate lyase family
33333318Serine hydroxymethyltransferase
85866841Iron-containing alcohol dehydrogenase
22222212Ribosomal protein L10
22226216KOW motif
111115Ribosomal protein L34
111115Ribosomal protein L33
33332317RF-1 domain
64686636Sodium:solute symporter family
1111116Imidazoleglycerol-phosphate dehydratase
1111116DNA polymerase family A
1111116IMP dehydrogenase / GMP reductase domain
1111116Glucose-6-phosphate dehydrogenase, NAD binding domain
77777843Protein phosphatase 2C
22222212Nucleotidyl transferase
63444425Carbonic anhydrase
41211211Phosphoribulokinase / Uridine kinase family
117101081056Fatty acid desaturase
66666636MutS domain V
1111116Delta-aminolevulinic acid dehydratase
73575633Arginase family
66666636MCM P-loop domain
32332316Squalene/phytoene synthase
1215121391273FHA domain
714857735061360AMP-binding enzyme
44444424G-protein alpha subunit
87886845HMG (high mobility group) box
14111212111373His Kinase A (phospho-acceptor) domain
22223213Armadillo/beta-catenin-like repeat
171619192516112Tetratricopeptide repeat
32223315Ion transport protein
1111116DNA gyrase/topoisomerase IV, subunit A
898810952BRCA1 C Terminus (BRCT) domain
77777742Glycosyl transferases group 1
22229219Glycosyl transferase family 2
22224113SAM domain (Sterile alpha motif)
1111116linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
1381213121169Pectate lyase
25231316ribonuclease
1111116Urease, gamma subunit
64554529CoA-ligase
302227321932162Phosphopantetheine attachment site
43433320Formyl transferase
12111411111574Metallopeptidase family M24
323214428Leucine Rich Repeat
211218184118128alpha/beta hydrolase fold
33333318RNA polymerase Rpb2, domain 6
44444525PB1 domain
22222212Staphylococcal nuclease homologue
12121212101270Rab-GTPase-TBC domain
1111116Tudor domain
1111116WH1 domain
54546630Zinc finger, ZZ type
3111118HRDC domain
66668638CBS domain
22222212Ribosomal protein L13
22222212Ribosomal protein L4/L1 family
1111116Clp protease
44443423S1 RNA binding domain
1111116HIUase/Transthyretin family
44445425AhpC/TSA family
44444424tRNA synthetases class I (W and Y)
22221211UvrD/REP helicase N-terminal domain
1812161561683Rhodanese-like domain
22222212Universal stress protein family
594153526150316Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
1111116C-terminal regulatory domain of Threonine dehydratase
22222212AIR synthase related protein, N-terminal domain
87889848tRNA synthetase class II core domain (G, H, P, S and T)
1111116SpoU rRNA Methylase family
22222212Tetrapyrrole (Corrin/Porphyrin) Methylases
1111116Glycosyl transferase family, a/b domain
22PDZ domain
1351212121367Class II Aldolase and Adducin N-terminal domain
65654531Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
45443424Fes/CIP4, and EFC/F-BAR homology domain
22224315IQ calmodulin-binding motif
22222212Phosphoinositide 3-kinase family, accessory domain (PIK domain)
33335320Phospholipase D Active site motif
1281092849Regulator of G protein signaling domain
44444424GTPase-activator protein for Ras-like GTPase
44444424RasGEF domain
44442422RasGEF N-terminal motif
98999953RhoGAP domain
87775741RhoGEF domain
53653527SPRY domain
33333318RNA polymerase Rpb1, domain 2
32323215Guanylate kinase
44444424Gelsolin repeat
35446527UBA/TS-N domain
11121011161272PHD-finger
111115GGL domain
66666636HECT-domain (ubiquitin-transferase)
1111217Helix-hairpin-helix motif
1111116MSP (Major sperm protein) domain
44443423Ribonuclease III domain
44441421Region in Clathrin and VPS
23222213RanBP1 domain
1111217PPIC-type PPIASE domain
22222212Zn-finger in Ran binding protein and others
988919861Zinc finger C-x8-C-x5-C-x3-H type (and similar)
42631420Poly(ADP-ribose) polymerase catalytic domain
111115Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
2314202212125225F-box domain
1111116Elongation factor 1 gamma, conserved domain
126655842Calpain family cysteine protease
33333217Copper fist DNA binding domain
65666534CRAL/TRIO domain
25182120818110BTB/POZ domain
11Ricin-type beta-trefoil lectin domain
1111116Inhibitor of Apoptosis domain
34333420Voltage gated chloride channel
112974841Caspase domain
134121021868GDSL-like Lipase/Acylhydrolase
1111116Poly-adenylate binding protein, unique domain
111115POLO box duplicated region
402537383934213ABC transporter transmembrane region
1471211121369FAD binding domain
14131114101476Condensation domain
1111116S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1111116HAMP domain
22222212ribosomal L5P family C-terminus
86665738Insulinase (Peptidase family M16)
53565428Dehydrogenase E1 component
1111116Lumazine binding domain
66666636Elongation factor G C-terminus
65676636HMGL-like
44444424DnaJ central domain
22222111Starch binding domain
33332317Ribosomal protein L1p/L10e family
201720201822117Cation transporting ATPase, C-terminus
221519211722116Cation transporter/ATPase, N-terminus
1111116dUTPase
105778744Aconitase C-terminal domain
53554426Amino acid kinase family
1111116N-(5'phosphoribosyl)anthranilate (PRA) isomerase
16121517151994Acyl transferase domain
1111116Urease beta subunit
13101314131376Dihydrodipicolinate synthetase family
312429295031194haloacid dehalogenase-like hydrolase
105109111055Glycosyl hydrolases family 2
241828212331145Glycosyl hydrolases family 18
1111116Proliferating cell nuclear antigen, N-terminal domain
1111116Translation initiation factor IF-3, C-terminal domain
111115Acylphosphatase
21222110Adenylosuccinate synthetase
65775636Asparaginase, N-terminal
22232213Peptidase S24-like
22222212Inorganic pyrophosphatase
201719201719112Glycosyl hydrolases family 16
22222212Glycosyl hydrolases family 15
261024252320128NADH:flavin oxidoreductase / NADH oxidase family
634557303-hydroxyacyl-CoA dehydrogenase, C-terminal domain
21424215Glycosyl hydrolase family 20, catalytic domain
76777741HhH-GPD superfamily base excision DNA repair protein
1111116AIR carboxylase
392133333236194GMC oxidoreductase
22222212Asparagine synthase
15121414121481Fungal cellulose binding domain
66665635Septin
21222110EF-1 guanine nucleotide exchange domain
22123212Homoserine dehydrogenase
2016192321898Flavin-binding monooxygenase-like
33333318tRNA synthetases class I (E and Q), catalytic domain
33333318tRNA synthetases class I (R)
45454426XPG N-terminal domain
30928213116135Metallo-beta-lactamase superfamily
2111319F5/8 type C domain
53444424Choline/Carnitine o-acyltransferase
33331316Putative esterase
1111116Ferrochelatase
22222212Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1122219Arginosuccinate synthase
1111116Electron transfer flavoprotein FAD-binding domain
33333318RNB domain
104127121459Dioxygenase
33332317CNH domain
22221211Diacylglycerol kinase catalytic domain
99996951Dual specificity phosphatase, catalytic domain
66
22222212P21-Rho-binding domain
14141414131382PX domain
22223213Ras association (RalGDS/AF-6) domain
44444424UBX domain
55554529VHS domain
1111116Phosphoinositide 3-kinase C2
32222213DAHP synthetase I family
22918171820104Carbon-nitrogen hydrolase
75566635N-acetyltransferase
1111116Prephenate dehydratase
1113PKD domain
33334319Syntaxin
44445425Pumilio-family RNA binding repeat
77775740Histone-like transcription factor (CBF/NF-Y) and archaeal histone
2111117Pterin binding enzyme
22222212ER lumen protein retaining receptor
22222212Glycoprotease family
32232416Histidinol dehydrogenase
44444424impB/mucB/samB family
11
1111116Ribosomal L15
33331316Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
111115Ribosomal L28 family
1111116Ribosomal L29 protein
1111116Ribosomal L39 protein
1111116Ribosomal S17
1111116Ribulose-phosphate 3 epimerase family
1111116Translationally controlled tumour protein
33333318Glycosyl hydrolase family 7
93910940Ring hydroxylating alpha subunit (catalytic domain)
1111116RNA pseudouridylate synthase
44444424Histone deacetylase domain
55555530POT family
1111116PWWP domain
231818181020107SET domain
12810117957Isochorismatase family
55553528Permease family
1111116Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
44444424XPG I-region
1111116Acetokinase family
33333318DNA photolyase
41433823Nitroreductase family
21926231925123Sulfatase
11111166,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
22222212Acyl CoA binding protein
44443423Cullin family
145131531464FAD binding domain
10910891157O-methyltransferase domain
33333419EamA-like transporter family
11
88888848ThiF family
1111116Ribosomal family S4e
122812101054Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
44444424Ammonium Transporter Family
77776842Sulfate permease family
1111116MATH domain
44444525Dehydratase family
22242214Transaldolase/Fructose-6-phosphate aldolase
22222212Mechanosensitive ion channel
32333216GTP cyclohydrolase II
11111163,4-dihydroxy-2-butanone 4-phosphate synthase
44443423Adaptor complexes medium subunit family
55675735Exonuclease
33332317Dipeptidyl peptidase IV (DPP IV) N-terminal region
105151541463NB-ARC domain
11Lamin Tail Domain
382035373832200Glycosyl hydrolase family 3 N terminal domain
1111116Ribosomal protein L44
1111116Sodium:sulfate symporter transmembrane region
1111116DNA-dependent RNA polymerase
21222211FAD binding domain in molybdopterin dehydrogenase
1111116Glycosyl transferase family 4
22322213HCO3- transporter family
22222212Nucleosome assembly protein (NAP)
54555428Synaptobrevin
21222211GMP synthase C terminal domain
32323316Phage lysozyme
9691010852Adenosine/AMP deaminase
1281412121674Oxidoreductase FAD-binding domain
32222415Thioesterase domain
22222212Histidine biosynthesis protein
33333318Glycosyltransferase family 20
43333319UDP-glucose/GDP-mannose dehydrogenase family, central domain
22222212Carbamoyl-phosphate synthase small chain, CPSase domain
11
22222212Probable molybdopterin binding domain
44444424Sec1 family
22222212GDP dissociation inhibitor
11710921049Sodium/hydrogen exchanger family
22222212RNA polymerase Rpb3/RpoA insert domain
55555530Initiation factor 2 subunit family
11PQQ enzyme repeat
22221211Electron transfer flavoprotein domain
1111116Uricase
1111116Ribosomal S3Ae family
1111116Ribosomal L27 protein
1111318GTP1/OBG
53434423Gamma-glutamyltranspeptidase
111115Ribosomal L40e family
1111116GrpE
44444424TatD related DNase
22221211Inhibitor of apoptosis-promoting Bax1
1111116Eukaryotic DNA topoisomerase I, catalytic core
118892846Dynamin central region
222222126-O-methylguanine DNA methyltransferase, DNA binding domain
83534528Bacteriorhodopsin-like protein
42444321Carboxyl transferase domain
24222315UbiA prenyltransferase family
291330273129