PFAM Domains • Rhizopus microsporus ATCC11559 v1.0
Annotations/GenomesBacci1Hesve1Lichy1Morel1Mucci2Phybl2Rhich1Rhimi1_1Rhimi_ATCC11559_1Rhimi_ATCC52814_1Rhior3Umbra1TotalAnnotation Description
PFAMs
13,4788,54510,46610,1449,5849,21615,2568,6268,4788,51212,2188,515123,038
521543531313367 transmembrane sweet-taste receptor of 3 GCPR
534345474448653837375140548ATPase family associated with various cellular activities (AAA)
673960945248603432334435598ABC transporter
12956912478611796ATP synthase alpha/beta family, nucleotide-binding domain
1313211113EGF-like domain
251819191721301817192418245Elongation factor Tu GTP binding domain
753051263735743942405231532Helix-loop-helix DNA-binding domain
4247147773257Hsp20/alpha crystallin family
19101414111218101010189155Hsp70 protein
191515131412221314131613179KH domain
11Ribulose bisphosphate carboxylase large chain, catalytic domain
1111111111111SH2 domain
894865384137914848505545655SH3 domain
161012111111181111111510147Actin
714551604237954546496564670Ankyrin repeat
15101120121013998119137ADP-ribosylation factor family
352627372733382020203523341Eukaryotic aspartyl protease
769577127779689Cyclic nucleotide-binding domain
11Cystatin domain
112Cytochrome b(C-terminal)/b6/petD
11136Cytochrome b/b6/petB
21331132122122Cytochrome c
12331111111218Double-stranded RNA binding motif
543244434335553331344834486EF hand
112111411151204Fe-4S binding domain
2121111111113Fibronectin type III domain
4222242222125Globin
2014121413719111091215156Glutathione S-transferase, C-terminal domain
62223363334138Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
552437122728512928293718375Homeodomain
55Kazal-type serine protease inhibitor domain
84655563334355lactate/malate dehydrogenase, NAD binding domain
22Lectin C-type domain
2113157171628161616198192Myosin head (motor domain)
853764284154633531314849566Cytochrome P450
3582052772012372203862102072112961652,973Protein kinase domain
231319111816281515152116210Pyridine nucleotide-disulphide oxidoreductase
824259406054855151516539679Ras family
301633201518271716162120249Response regulator receiver domain
122221111RNase H
13782109878897165969895112951,261RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
14950Retroviral aspartyl protease
123454703524Reverse transcriptase (RNA-dependent DNA polymerase)
53353263335243Copper/zinc superoxide dismutase (SODC)
11122121112116Iron/manganese superoxide dismutases, alpha-hairpin domain
311519221624271515162411235Subtilase family
662846144728422222224647430Sugar (and other) transporter
181214191513241614151513188Thioredoxin
11Thyroglobulin type-1 repeat
1214Trefoil (P-type) domain
53554253334648Trypsin
137136899888116106Tubulin/FtsZ family, GTPase domain
33von Willebrand factor type A domain
174100127104140203147878688138691,463Zinc finger, C2H2 type
966370676455776048504162753Zinc finger, C3HC4 type (RING finger)
1810211745703723182013219430Zinc knuckle
75336585558363Protein-tyrosine phosphatase
493845504533492727263171491short chain dehydrogenase
461928302923392322232834344Zinc-binding dehydrogenase
9666105115557681Thiolase, N-terminal domain
32223232333230Beta-ketoacyl synthase, N-terminal domain
534744844452542Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
32322242222127Enolase, C-terminal TIM barrel domain
2215Cytochrome C and Quinol oxidase polypeptide I
11114Cytochrome C oxidase subunit II, periplasmic domain
13811109101799998122Glutamine amidotransferase class-I
151113121115161110111811154TCP-1/cpn60 chaperonin family
11ATP synthase A chain
957556105556472Glutamine synthetase, catalytic domain
21121121111115Triosephosphate isomerase
493426353026482625263425384E1-E2 ATPase
21132414142013141413209189Core histone H2A/H2B/H3/H4
213Copper binding proteins, plastocyanin/azurin family
22331141223630Alpha amylase, catalytic domain
171214947241113131310147Phorbol esters/diacylglycerol binding domain (C1 domain)
89868517876910101Bacterial transferase hexapeptide (six repeats)
64454484447458tRNA synthetases class I (I, L, M and V)
181521151818332018191716228Cyclin, N-terminal domain
21303121223653Carboxylesterase family
55455484446559DNA polymerase family B
83365484445458ATP synthase subunit C
111111111110Legume lectin domain
43214263333236Peroxidase
1231812111434Beta-lactamase
12332421111223C-5 cytosine-specific DNA methylase
1113NADH dehydrogenase
493439353734503330313729438Calcineurin-like phosphoesterase
56563464444859Cellulase (glycosyl hydrolase family 5)
876666106667680tRNA synthetases class II (D, K and N)
805466616354905254536345735Mitochondrial carrier protein
11recA bacterial DNA recombination protein
271921172020341818182215249Aminotransferase class I and II
149138131116101010159138Phosphoribosyl transferase domain
151315151514271618171711193Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11212121112116Phosphoglycerate kinase
33443323435340Ribosomal protein S4/S9 N-terminal domain
43434464446349Ribosomal protein S12/S23
22Bacterial regulatory helix-turn-helix proteins, AraC family
11112211111114Chaperonin 10 Kd subunit
361832312322412020202619308C2 domain
8548793244481025350536045699PH domain
481732152819492630293813344bZIP transcription factor
201725161512221212121513191Aldehyde dehydrogenase family
925880384647775237463060663Fungal Zn(2)-Cys(6) binuclear cluster domain
603342284139693739384130497Cytochrome b5-like Heme/Steroid binding domain
2234211111220Oxidoreductase molybdopterin binding domain
191517131613231313131414183Oxidoreductase NAD-binding domain
262424222020362222222621285SNF2 family N-terminal domain
43524363335344Ribosomal protein S7p/S5e
262023252220432222222620291Ubiquitin-conjugating enzyme
11610788127779698Isocitrate/isopropylmalate dehydrogenase
63435444445450Ribosomal Proteins L2, RNA binding domain
53534484445352Hsp90 protein
43233642224237Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
22212242221224Dihydrofolate reductase
22Chitin recognition protein
418116142222346Cysteine-rich secretory protein family
53415433443241Ribosomal protein S3, C-terminal domain
22Annexin
22Eukaryotic-type carbonic anhydrase
645564644464582-oxoacid dehydrogenases acyltransferase (catalytic domain)
72334263334343Catalase
62243222223333Disintegrin
20351011175712586UDP-glucoronosyl and UDP-glucosyl transferase
86546695556570Aminotransferase class-III
73434443235345Ribosomal protein S19
11111121111113DNA gyrase B
73216343335343Thiamine pyrophosphate enzyme, central domain
45454463334449Lyase
52343373333342Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11232232223427Ferritin-like domain
42322242223129Adenylate and Guanylate cyclase catalytic domain
21221121112117ATP synthase delta (OSCP) subunit
11111111111112Orotidine 5'-phosphate decarboxylase / HUMPS family
21111111111113Indole-3-glycerol phosphate synthase
43433363335242Pyruvate kinase, barrel domain
362629152820462826283318333Kinesin motor domain
453535333934673735353830463DnaJ domain
171414141414261414142613194Proteasome subunit
12272211112426Major intrinsic protein
2112222111217ATP synthase
22Glycosyl hydrolase family 1
1258386966683803'5'-cyclic nucleotide phosphodiesterase
11121132222119Profilin
53434584445251Ribosomal protein L22p/L17e
43433343336342Ribosomal protein L14p/L23e
311823252223352120192820285Ubiquitin family
768764126668682Cofilin/tropomyosin-type actin-binding protein
6364338444735514-3-3 protein
53544353334244Alkaline phosphatase
527Zinc carboxypeptidase
421629172620341818181928285Aldo/keto reductase family
393137372320613331313325401Myb-like DNA-binding domain
1410108101013677127114Forkhead domain
11125Glycosyl hydrolases family 32 N-terminal domain
11111121112114Ribosomal protein L16p/L10e
53424423334340Ribosomal protein S14p/S29e
977966105556782FKBP-type peptidyl-prolyl cis-trans isomerase
21221232223123Glutathione peroxidase
54435364344348
21171761513201110111414169Flavodoxin
11Tropomyosin
11151221112119Calreticulin family
956117595455778Aminotransferase class-V
31223121112120Ribonucleotide reductase, small chain
524851564847854747495745632DEAD/DEAH box helicase
99848893817412877787884751,039Helicase conserved C-terminal domain
21111121111114EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
53434343335343Ribosomal protein L23
3134111112119Pyridoxal-dependent decarboxylase, C-terminal sheet domain
53433554447350Ribosomal protein L5
63454553334651Pyridoxal-dependent decarboxylase conserved domain
21221221111117Citrate synthase, C-terminal domain
766666126666679GHMP kinases N terminal domain
12811811111688998119Biotin carboxylase, N-terminal domain
11111121112114Tryptophan synthase alpha chain
12999109159991011121Pyridoxal-phosphate dependent enzyme
156'Paired box' domain
261818172316392020212315256NUDIX domain
1066476106666679pfkB family carbohydrate kinase
55129775518367Glycosyl hydrolases family 28
53224353335240Ribosomal protein L3
65434574447457Ribosomal protein L11, RNA binding domain
138118111116101010710125Histidine phosphatase superfamily (branch 1)
11111121111113Thymidylate synthase
11886912376611794ATP synthase alpha/beta chain, C terminal domain
1310161312921129998141Calponin homology (CH) domain
21115Bacterial dnaA protein
10791012696668594Glutamine amidotransferases class-II
32423263335339Ribosomal protein S15
2133222111220'Cold-shock' DNA-binding domain
7584584446459Thaumatin family
11111121112114Fructose-1-6-bisphosphatase, N-terminal domain
52334263333239Ribonucleotide reductase, all-alpha domain
73334443326345Ribosomal protein S2
1471341071499996111SRF-type transcription factor (DNA-binding and dimerisation domain)
653043243635683937403922478GATA zinc finger
352319382119341818182425292Amino acid permease
9851066126667889Prolyl oligopeptidase family
63625584447155Ribosomal protein L30p/L7e
635115274555563Histidine phosphatase superfamily (branch 2)
21211121111115Respiratory-chain NADH dehydrogenase, 30 Kd subunit
64666595556669Aconitase family (aconitate hydratase)
11Glycosyl hydrolase family 10
42453123222535Glycosyl hydrolases family 17
53534533336346Ribosomal protein S5, N-terminal domain
65426495555359Nucleoside diphosphate kinase
74646523441450Tetraspanin family
33323363336240Ribosomal protein S10p/S20e
461725122222322016161720265Arrestin (or S-antigen), N-terminal domain
11311121111115Phosphoglucose isomerase
321232222120Carbohydrate phosphorylase
41212242233127SecY translocase
11111121112114Respiratory-chain NADH dehydrogenase, 49 Kd subunit
43443463334344Ribosomal protein L6
65535495555360Polyprenyl synthetase
17812611716888118120Hexokinase
9681178137778697Dynamin family
11121121112115Biopterin-dependent aromatic amino acid hydroxylase
31212211112118Transcription factor TFIID (or TATA-binding protein, TBP)
53565554344453Rieske [2Fe-2S] domain
12148Proton-conducting membrane transporter
15111391210191011111210143Biotin-requiring enzyme
42212242222227Phosphofructokinase
32232212223226Ribosomal protein S17
22313132222124Hydroxymethylglutaryl-coenzyme A reductase
945366126667575FGGY family of carbohydrate kinases, N-terminal domain
3131212111117Sodium:dicarboxylate symporter family
171214101411231212121312162Enoyl-CoA hydratase/isomerase
53334484446351Ribosomal protein S9/S16
32253342223334Transcription factor TFIIB repeat
10510694106665784Cytidine and deoxycytidylate deaminase zinc-binding region
2113121112116Molybdopterin oxidoreductase
23141516922371812172396428Chromo (CHRromatin Organisation MOdifier) domain
11Phosphatidylinositol-specific phospholipase C, Y domain
11Phosphatidylinositol-specific phospholipase C, X domain
65655585556566D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
74625485555359Malic enzyme, N-terminal domain
213PEP-utilising enzyme, mobile domain
312132422231266-phosphogluconate dehydrogenase, C-terminal domain
77865573545567Multicopper oxidase
2613161787251313121712179WW domain
32333363333338Ribosomal RNA adenine dimethylase
2041571713491581622881571581611731452,283WD domain, G-beta repeat
11ATP synthase, Delta/Epsilon chain, long alpha-helix domain
112Calponin family repeat
54475453333450Heavy-metal-associated domain
845465105555466Adenylate kinase
22322242223228Phosphoglucomutase/phosphomannomutase, C-terminal domain
53433363335243Ribosomal protein S8
43334363333341Ribosomal protein S11
19141291314241514121112169LIM domain
35331484446449Regulator of chromosome condensation (RCC1) repeat
44434244445345Ribosomal protein S13/S18
211112111112Tau and MAP protein, tubulin-binding repeat
112NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
42222232222227chorismate binding enzyme
15996871377711510460s Acidic ribosomal protein
22CUB domain
45444484444453Prenyltransferase and squalene oxidase repeat
1710149911171010101410141Protein kinase C terminal domain
11Spectrin repeat
11121121112115Single-strand binding protein family
21111121112115S-adenosylmethionine synthetase, N-terminal domain
231617162014271816161812213Bromodomain
211620181516251716172012213Acyl-CoA dehydrogenase, C-terminal domain
271923252621432222212519293Ubiquitin carboxyl-terminal hydrolase
1111111119Ribosomal protein L36
24231443122331Ribonuclease T2 family
29112472014251414151812203HSF-type DNA-binding
22222242222226SRP54-type protein, GTPase domain
32112221111118Urease alpha-subunit, N-terminal domain
712945774447373Serine carboxypeptidase
15121011131021121112129148Phosphatidylinositol 3- and 4-kinase
62322232222230Transketolase, thiamine diphosphate binding domain
121121111213WHEP-TRS domain
22222242222226Inositol monophosphatase family
8586105136666685Glutaredoxin
42212142222226Isocitrate lyase family
22222242222226Serine hydroxymethyltransferase
21111121112115Iron-containing alcohol dehydrogenase
34124253335136Ribosomal protein L10
147591087666237108KOW motif
11111121111113Ribosomal protein L34
11211118Ribosomal protein L33
33333253333236RF-1 domain
1112121111113Sodium:solute symporter family
21111121111114Imidazoleglycerol-phosphate dehydratase
11111111111112DNA polymerase family A
31112121112117IMP dehydrogenase / GMP reductase domain
53433342224237Glucose-6-phosphate dehydrogenase, NAD binding domain
1781111101118111010176140Protein phosphatase 2C
757364116566571Nucleotidyl transferase
32232211111120Carbonic anhydrase
32222142223227Phosphoribulokinase / Uridine kinase family
13771181614777106113Fatty acid desaturase
667676106665677MutS domain V
11112121111114Delta-aminolevulinic acid dehydratase
33522342223334Arginase family
66686696667678MCM P-loop domain
33313463334238Squalene/phytoene synthase
291825171718321517172014239FHA domain
112NADH-ubiquinone/plastoquinone oxidoreductase chain 6
572847353736573032303925453AMP-binding enzyme
1713148121014888119132G-protein alpha subunit
311233132123371920202916274HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
112Cytochrome c oxidase subunit III
157181378138871212128His Kinase A (phospho-acceptor) domain
1988710101889897121Armadillo/beta-catenin-like repeat
57414439