PFAM Domains • Naiadella fluitans ATCC 64713 v1.0
Annotations/GenomesAgahy1Hetpy1Naifl1Rhomi1Spoli1Trisp1TotalAnnotation Description
PFAMs
5,7225,5786,4786,1746,4235,57735,952
1127 transmembrane receptor (rhodopsin family)
303340363432205ATPase family associated with various cellular activities (AAA)
302853344568258ABC transporter
44444424ATP synthase alpha/beta family, nucleotide-binding domain
112EGF-like domain
13141313131379Elongation factor Tu GTP binding domain
99101011958Helix-loop-helix DNA-binding domain
11226Hsp20/alpha crystallin family
87989748Hsp70 protein
88988748KH domain
111115SH2 domain
232522222420136SH3 domain
9989111056Actin
171721201916110Ankyrin repeat
224PAN domain
77887744ADP-ribosylation factor family
1113191324686Eukaryotic aspartyl protease
33333318Cyclic nucleotide-binding domain
1113Cytochrome b(C-terminal)/b6/petD
1124Cytochrome b/b6/petB
1111116Cytochrome c
111115Double-stranded RNA binding motif
201620181515104EF hand
11111164Fe-4S binding domain
111216Fibronectin type III domain
11Globin
7461015951Glutathione S-transferase, C-terminal domain
1111116Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
881656548Homeodomain
1113Laminin EGF domain
22222212lactate/malate dehydrogenase, NAD binding domain
55555631Myosin head (motor domain)
131022242631126Cytochrome P450
10814210710511495671Protein kinase domain
11111413171076Pyridine nucleotide-disulphide oxidoreductase
252528252526154Ras family
1114101621476Response regulator receiver domain
221553532RNase H
556461606059359RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
21328Copper/zinc superoxide dismutase (SODC)
2111128Iron/manganese superoxide dismutases, alpha-hairpin domain
4579355101Subtilase family
342211211817123Sugar (and other) transporter
111114118964Thioredoxin
45433625Tubulin/FtsZ family, GTPase domain
24221213von Willebrand factor type A domain
303530324137205Zinc finger, C2H2 type
343150404530230Zinc finger, C3HC4 type (RING finger)
9165314615113Zinc knuckle
25422318Protein-tyrosine phosphatase
512939696542295short chain dehydrogenase
221921372527151Zinc-binding dehydrogenase
34465729Thiolase, N-terminal domain
11111510Beta-ketoacyl synthase, N-terminal domain
544434242Fe-2S iron-sulfur cluster binding domain
1121117Enolase, C-terminal TIM barrel domain
1146Cytochrome C and Quinol oxidase polypeptide I
1113Cytochrome C oxidase subunit II, periplasmic domain
68778743Glutamine amidotransferase class-I
9101010101059TCP-1/cpn60 chaperonin family
112ATP synthase A chain
22432114Glutamine synthetase, catalytic domain
1111127Triosephosphate isomerase
8121314151274E1-E2 ATPase
152913182613114Core histone H2A/H2B/H3/H4
11Copper binding proteins, plastocyanin/azurin family
13375120Alpha amylase, catalytic domain
23455322Phorbol esters/diacylglycerol binding domain (C1 domain)
65966537Bacterial transferase hexapeptide (six repeats)
23332518tRNA synthetases class I (I, L, M and V)
119141012965Cyclin, N-terminal domain
391559344Carboxylesterase family
44444424DNA polymerase family B
33333419ATP synthase subunit C
11Legume lectin domain
12222110Peroxidase
2233616Beta-lactamase
2226C-5 cytosine-specific DNA methylase
2114NADH dehydrogenase
211822202018119Calcineurin-like phosphoesterase
21468324Cellulase (glycosyl hydrolase family 5)
54554831tRNA synthetases class II (D, K and N)
333334373436207Mitochondrial carrier protein
16151615151188Aminotransferase class I and II
66777740Phosphoribosyl transferase domain
13131011121372Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11Ribosome inactivating protein
1111116Phosphoglycerate kinase
22222212Ribosomal protein S4/S9 N-terminal domain
22222212Ribosomal protein S12/S23
112Bacterial regulatory helix-turn-helix proteins, AraC family
1111116Chaperonin 10 Kd subunit
13141310131275C2 domain
202017181720112PH domain
7911710650bZIP transcription factor
10121012131067Aldehyde dehydrogenase family
525440573848289Fungal Zn(2)-Cys(6) binuclear cluster domain
171719212121116Cytochrome b5-like Heme/Steroid binding domain
2237Oxidoreductase molybdopterin binding domain
67777741Oxidoreductase NAD-binding domain
182017192318115SNF2 family N-terminal domain
22222212Ribosomal protein S7p/S5e
171725162019114Ubiquitin-conjugating enzyme
55555530Isocitrate/isopropylmalate dehydrogenase
22222212Ribosomal Proteins L2, RNA binding domain
22322213Hsp90 protein
22222212Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111116Dihydrofolate reductase
11Chitin recognition protein
5433318Cysteine-rich secretory protein family
1111116Ribosomal protein S3, C-terminal domain
1326Cupin
11114Annexin
22Eukaryotic-type carbonic anhydrase
22Bacterial regulatory proteins, luxR family
233233162-oxoacid dehydrogenases acyltransferase (catalytic domain)
21232111Catalase
1121117Disintegrin
1113UDP-glucoronosyl and UDP-glucosyl transferase
76584535Aminotransferase class-III
22222212Ribosomal protein S19
1111116DNA gyrase B
31243316Thiamine pyrophosphate enzyme, central domain
33433319Lyase
12222110Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11Sodium:neurotransmitter symporter family
1211117Adenylate and Guanylate cyclase catalytic domain
1111116ATP synthase delta (OSCP) subunit
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
2111117Indole-3-glycerol phosphate synthase
111115Aromatic amino acid lyase
1111116Pyruvate kinase, barrel domain
991188651Kinesin motor domain
262432313125169DnaJ domain
14141414141484Proteasome subunit
23399228Major intrinsic protein
1111116ATP synthase
1113Glycosyl hydrolase family 1
1111153'5'-cyclic nucleotide phosphodiesterase
1111116Profilin
1121229Ribosomal protein L22p/L17e
22222212Ribosomal protein L14p/L23e
1210151416774Ubiquitin family
44443423Cofilin/tropomyosin-type actin-binding protein
2252211414-3-3 protein
21433316Alkaline phosphatase
111137Zinc carboxypeptidase
22101021141289Aldo/keto reductase family
121414811968Myb-like DNA-binding domain
54345324Forkhead domain
11114Glycosyl hydrolases family 32 N-terminal domain
1111116Ribosomal protein L16p/L10e
22221211Ribosomal protein S14p/S29e
43544222FKBP-type peptidyl-prolyl cis-trans isomerase
1111116Glutathione peroxidase
1111127
46444729Flavodoxin
1111116Calreticulin family
11Common central domain of tyrosinase
55355326Aminotransferase class-V
2111229Ribonucleotide reductase, small chain
363950384735245DEAD/DEAH box helicase
647084667965428Helicase conserved C-terminal domain
11Fructose-bisphosphate aldolase class-I
1111116EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22221211Ribosomal protein L23
1111116Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1211117Ribosomal protein L5
53555528Pyridoxal-dependent decarboxylase conserved domain
12322212Citrate synthase, C-terminal domain
55555429GHMP kinases N terminal domain
45545730Biotin carboxylase, N-terminal domain
1121128Tryptophan synthase alpha chain
76787944Pyridoxal-phosphate dependent enzyme
11'Paired box' domain
11101114181478NUDIX domain
43445424pfkB family carbohydrate kinase
33Glycosyl hydrolases family 28
11Luciferase-like monooxygenase
22222212Ribosomal protein L3
21222211Ribosomal protein L11, RNA binding domain
1391911141379Histidine phosphatase superfamily (branch 1)
1111116Thymidylate synthase
44444424ATP synthase alpha/beta chain, C terminal domain
44443423Calponin homology (CH) domain
44455426Glutamine amidotransferases class-II
23222213Ribosomal protein S15
221229'Cold-shock' DNA-binding domain
3328Thaumatin family
1111116Fructose-1-6-bisphosphatase, N-terminal domain
2111117Ribonucleotide reductase, all-alpha domain
22222212Ribosomal protein S2
34333925SRF-type transcription factor (DNA-binding and dimerisation domain)
10109610752GATA zinc finger
14211311151185Amino acid permease
55455529Prolyl oligopeptidase family
1111127Ribosomal protein L30p/L7e
641257337Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
44546427Aconitase family (aconitate hydratase)
121149Glycosyl hydrolases family 17
22222212Ribosomal protein S5, N-terminal domain
12222110Nucleoside diphosphate kinase
123Tetraspanin family
1111217Ribosomal protein S10p/S20e
34257223Arrestin (or S-antigen), N-terminal domain
1111116Phosphoglucose isomerase
1111116Carbohydrate phosphorylase
1111116SecY translocase
1111116Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222212Ribosomal protein L6
33333419Polyprenyl synthetase
22222212Hexokinase
55534325Dynamin family
1111127Transcription factor TFIID (or TATA-binding protein, TBP)
42443118Rieske [2Fe-2S] domain
4228Proton-conducting membrane transporter
57757940Biotin-requiring enzyme
1111116Phosphofructokinase
22222212Ribosomal protein S17
1121117Hydroxymethylglutaryl-coenzyme A reductase
32322214FGGY family of carbohydrate kinases, N-terminal domain
112Sodium:dicarboxylate symporter family
478712846Enoyl-CoA hydratase/isomerase
22222212Ribosomal protein S9/S16
32231213Transcription factor TFIIB repeat
56765534Cytidine and deoxycytidylate deaminase zinc-binding region
1111116Molybdopterin oxidoreductase
65554429Chromo (CHRromatin Organisation MOdifier) domain
21213211Phosphatidylinositol-specific phospholipase C, Y domain
22213212Phosphatidylinositol-specific phospholipase C, X domain
96476638D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
1221219Malic enzyme, N-terminal domain
21122196-phosphogluconate dehydrogenase, C-terminal domain
43721118Multicopper oxidase
96987645WW domain
1112218Ribosomal RNA adenine dimethylase
9897104101103105608WD domain, G-beta repeat
14265523Heavy-metal-associated domain
33433319Adenylate kinase
21222211Phosphoglucomutase/phosphomannomutase, C-terminal domain
21122210Ribosomal protein S8
1111116Ribosomal protein S11
65866536LIM domain
42112313Regulator of chromosome condensation (RCC1) repeat
22422214Ribosomal protein S13/S18
2114NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
1221118chorismate binding enzyme
3333331860s Acidic ribosomal protein
57444428Prenyltransferase and squalene oxidase repeat
67655534Protein kinase C terminal domain
1211117Single-strand binding protein family
1111116S-adenosylmethionine synthetase, N-terminal domain
898881051Bromodomain
28108121151Acyl-CoA dehydrogenase, C-terminal domain
16151313171286Ubiquitin carboxyl-terminal hydrolase
112116Ribosomal protein L36
111216Ribonuclease T2 family
67854737HSF-type DNA-binding
22222212SRP54-type protein, GTPase domain
111115Urease alpha-subunit, N-terminal domain
753274358Serine carboxypeptidase
87899950Phosphatidylinositol 3- and 4-kinase
2111117Transketolase, thiamine diphosphate binding domain
1124WHEP-TRS domain
32134215Inositol monophosphatase family
54455427Glutaredoxin
22234215Isocitrate lyase family
1111116Serine hydroxymethyltransferase
11233111Iron-containing alcohol dehydrogenase
12222211Ribosomal protein L10
46654328KOW motif
11114Ribosomal protein L34
11114Ribosomal protein L33
32332215RF-1 domain
211127Sodium:solute symporter family
1111116Imidazoleglycerol-phosphate dehydratase
1111116DNA polymerase family A
1111116IMP dehydrogenase / GMP reductase domain
1121117Glucose-6-phosphate dehydrogenase, NAD binding domain
561255639Protein phosphatase 2C
22222111Nucleotidyl transferase
31414114Carbonic anhydrase
1111116Phosphoribulokinase / Uridine kinase family
55556632Fatty acid desaturase
66666838MutS domain V
1111116Delta-aminolevulinic acid dehydratase
2211219Arginase family
66866638MCM P-loop domain
21222211Squalene/phytoene synthase
88866642FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
81218172423102AMP-binding enzyme
911966546G-protein alpha subunit
8137861052HMG (high mobility group) box
1113NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
11Cytochrome c oxidase subunit III
71161321159His Kinase A (phospho-acceptor) domain
23342216Armadillo/beta-catenin-like repeat
242324162723137Tetratricopeptide repeat
21232111Ion transport protein
1111116DNA gyrase/topoisomerase IV, subunit A
1086109750BRCA1 C Terminus (BRCT) domain
655513438Glycosyl transferases group 1
33449124Glycosyl transferase family 2
1214SAM domain (Sterile alpha motif)
113117linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
1313ribonuclease
112116Urease, gamma subunit
33335522CoA-ligase
32344420Phosphopantetheine attachment site
32323316Formyl transferase
79778745Metallopeptidase family M24
15161613201393Leucine Rich Repeat
201525212415120alpha/beta hydrolase fold
33333318RNA polymerase Rpb2, domain 6
23446221PB1 domain
23222112Staphylococcal nuclease homologue
9981010854Rab-GTPase-TBC domain
111115Tudor domain
1111116WH1 domain
33533219Zinc finger, ZZ type
1111116HRDC domain
77988746CBS domain
22222212Ribosomal protein L13
22222212Ribosomal protein L4/L1 family
1113Clp protease
44334220S1 RNA binding domain
112127HIUase/Transthyretin family
33342419AhpC/TSA family
44444424tRNA synthetases class I (W and Y)
221218UvrD/REP helicase N-terminal domain
45455427Rhodanese-like domain
52251217Universal stress protein family
161524313413133Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
1111116C-terminal regulatory domain of Threonine dehydratase
22322213AIR synthase related protein, N-terminal domain
76775739tRNA synthetase class II core domain (G, H, P, S and T)
11SpoU rRNA Methylase family
22422214Tetrapyrrole (Corrin/Porphyrin) Methylases
1112117Glycosyl transferase family, a/b domain
23123213Class II Aldolase and Adducin N-terminal domain
31221211Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
53333219Fes/CIP4, and EFC/F-BAR homology domain
36225220IQ calmodulin-binding motif
22322213Phosphoinositide 3-kinase family, accessory domain (PIK domain)
33343319Phospholipase D Active site motif
1121117Regulator of G protein signaling domain
34444423GTPase-activator protein for Ras-like GTPase
44444323RasGEF domain
44444323RasGEF N-terminal motif
1312912131170RhoGAP domain
128912121063RhoGEF domain
33333318SPRY domain
33333318RNA polymerase Rpb1, domain 2
1111116Guanylate kinase
34333218Gelsolin repeat
779910951UBA/TS-N domain
16181616151697PHD-finger
112GGL domain
46445528HECT-domain (ubiquitin-transferase)
2244113Helix-hairpin-helix motif
11BRCA2 repeat
1111116MSP (Major sperm protein) domain
33265221Ribonuclease III domain
32222213Region in Clathrin and VPS
33333318RanBP1 domain
12412212PPIC-type PPIASE domain
1113Zn-finger in Ran binding protein and others
15141613171388Zinc finger C-x8-C-x5-C-x3-H type (and similar)
52119Poly(ADP-ribose) polymerase catalytic domain
1112117Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
363439484635238F-box domain
1111116Elongation factor 1 gamma, conserved domain
141118Calpain family cysteine protease
23141112Copper fist DNA binding domain
8814910756CRAL/TRIO domain
16644425BTB/POZ domain
123Ricin-type beta-trefoil lectin domain
1111116Inhibitor of Apoptosis domain
32333317Voltage gated chloride channel
1231119Caspase domain
24986332GDSL-like Lipase/Acylhydrolase
1111116Poly-adenylate binding protein, unique domain
1111116POLO box duplicated region
112NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
14918152634116ABC transporter transmembrane region
33333318FAD binding domain
22116Condensation domain
1111116S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1111116HAMP domain
12222110ribosomal L5P family C-terminus
656761141Insulinase (Peptidase family M16)
23424318Dehydrogenase E1 component
1111116Lumazine binding domain
55555530Elongation factor G C-terminus
34544424HMGL-like
44443423DnaJ central domain
11Sulfotransferase domain
11Starch binding domain
22122211Ribosomal protein L1p/L10e family
45765532Cation transporting ATPase, C-terminus
561179644Cation transporter/ATPase, N-terminus
1111116dUTPase
44546427Aconitase C-terminal domain
33334319Amino acid kinase family
1111116N-(5'phosphoribosyl)anthranilate (PRA) isomerase
21121411Acyl transferase domain
112116Urease beta subunit
11221310Dihydrodipicolinate synthetase family
222526282925155haloacid dehalogenase-like hydrolase
111115Glycosyl hydrolases family 2
64253222Glycosyl hydrolases family 18
1121117Proliferating cell nuclear antigen, N-terminal domain
111115Acylphosphatase
1111116Adenylosuccinate synthetase
2111128Asparaginase, N-terminal
22422315Peptidase S24-like
1111116Inorganic pyrophosphatase
63643426Glycosyl hydrolases family 16
2212119Glycosyl hydrolases family 15
21263923NADH:flavin oxidoreductase / NADH oxidase family
12221193-hydroxyacyl-CoA dehydrogenase, C-terminal domain
2231210Glycosyl hydrolase family 20, catalytic domain
52456325HhH-GPD superfamily base excision DNA repair protein
1111116AIR carboxylase
112714227GMC oxidoreductase
22232213Asparagine synthase
1225Fungal cellulose binding domain
55655531Septin
1211117EF-1 guanine nucleotide exchange domain
1111116Homoserine dehydrogenase
11316Flavin-binding monooxygenase-like
33332317tRNA synthetases class I (E and Q), catalytic domain
1211117tRNA synthetases class I (R)
55556531XPG N-terminal domain
96798746Metallo-beta-lactamase superfamily
11F5/8 type C domain
34444423Choline/Carnitine o-acyltransferase
1111116Putative esterase
41218Glycosyl hydrolase family 9
1111116Ferrochelatase
32222213Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1111116Arginosuccinate synthase
1111116Electron transfer flavoprotein FAD-binding domain
33333318RNB domain
21142212Dioxygenase
22233416CNH domain
22222212Diacylglycerol kinase catalytic domain
86677640Dual specificity phosphatase, catalytic domain
1113MyTH4 domain
33344421P21-Rho-binding domain
14111315121580PX domain
34323318Ras association (RalGDS/AF-6) domain
44444323UBX domain
45555529VHS domain
1121117Phosphoinositide 3-kinase C2
22222212DAHP synthetase I family
44666531Carbon-nitrogen hydrolase
11259N-acetyltransferase
1111116Prephenate dehydratase
54355426Syntaxin
45554427Pumilio-family RNA binding repeat
65557634Histone-like transcription factor (CBF/NF-Y) and archaeal histone
1121117Pterin binding enzyme
1111116ER lumen protein retaining receptor
22221110Glycoprotease family
11121410Histidinol dehydrogenase
43444423impB/mucB/samB family
1111116
1111116Ribosomal L15
1111116Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
112Ribosomal prokaryotic L21 protein
11114Ribosomal L28 family
1111116Ribosomal L29 protein
111115Ribosomal L39 protein
1111116Ribosomal S17
1111116Ribulose-phosphate 3 epimerase family
1111116Translationally controlled tumour protein
11322110RNA pseudouridylate synthase
56666534Histone deacetylase domain
211116POT family
31212110PWWP domain
138131312867SET domain
12232313Isochorismatase family
112127Permease family
1211117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
55555631XPG I-region
1113Acetokinase family
3342113DNA photolyase
11114Cation-independent mannose-6-phosphate receptor repeat
1113Cytosol aminopeptidase family, catalytic domain
22133213Sulfatase
11211176,7-dimethyl-8-ribityllumazine synthase
1113Ribosomal protein S16
33333217Acyl CoA binding protein
54454426Cullin family
11Elongation factor TS
35244826FAD binding domain
21115O-methyltransferase domain
43443826EamA-like transporter family
22321212
88988849ThiF family
1111116Ribosomal family S4e
1123119Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
32244217Ammonium Transporter Family
33433420Sulfate permease family
1111318MATH domain
12121310Dehydratase family
22222313Transaldolase/Fructose-6-phosphate aldolase
21531113Mechanosensitive ion channel
1121117GTP cyclohydrolase II
11111163,4-dihydroxy-2-butanone 4-phosphate synthase
44444424Adaptor complexes medium subunit family
87666639Exonuclease
1111116Dipeptidyl peptidase IV (DPP IV) N-terminal region
41422316Glycosyl hydrolase family 3 N terminal domain
1111116Ribosomal protein L44
1111116DNA-dependent RNA polymerase
11FAD binding domain in molybdopterin dehydrogenase
1111116Glycosyl transferase family 4
1111116HCO3- transporter family
22222212Nucleosome assembly protein (NAP)
54344424Synaptobrevin
1111116GMP synthase C terminal domain
213LAGLIDADG endonuclease
33211212Adenosine/AMP deaminase
44453323Oxidoreductase FAD-binding domain
33Thioesterase domain
22222212Histidine biosynthesis protein
22333316Glycosyltransferase family 20
1111116UDP-glucose/GDP-mannose dehydrogenase family, central domain
22222212Carbamoyl-phosphate synthase small chain, CPSase domain
1214PAS fold
21222211Probable molybdopterin binding domain
44544425Sec1 family
22222212GDP dissociation inhibitor
54557531Sodium/hydrogen exchanger family
22222212RNA polymerase Rpb3/RpoA insert domain
34344422Initiation factor 2 subunit family
11PQQ enzyme repeat
22222212Electron transfer flavoprotein domain
1113Uricase
1111116Ribosomal S3Ae family
1111116Ribosomal L27 protein
111115GTP1/OBG
32233114Gamma-glutamyltranspeptidase
1111116GrpE
23323316TatD related DNase
1111116Inhibitor of apoptosis-promoting Bax1
1111116Eukaryotic DNA topoisomerase I, catalytic core
2233