PFAM Domains • Lentinula edodes Le(Bin) 0899 ss11 v1.0
Annotations/GenomesGyman1Gymear1Gymlu1Lenafn1Lenedo1Lenlat1Lenrap1Ompol1Rhobut1_1TotalAnnotation Description
PFAMs
11,68913,64110,67410,21010,2079,89810,4106,93912,57296,240
117 transmembrane receptor (rhodopsin family)
21147 transmembrane receptor (Secretin family)
584642434541384241396ATPase family associated with various cellular activities (AAA)
827660464944444454499ABC transporter
512446544549ATP synthase alpha/beta family, nucleotide-binding domain
242517151515171520163Elongation factor Tu GTP binding domain
141415141312141221129Helix-loop-helix DNA-binding domain
99799897572Hsp20/alpha crystallin family
29299116108816126Hsp70 protein
97877777766KH domain
2114SH2 domain
312036192117172714202SH3 domain
191811141412141214128Actin
6210111151310142753396Ankyrin repeat
22PAN domain
711888897773ADP-ribosylation factor family
324439332931292428289Eukaryotic aspartyl protease
33333333327Cyclic nucleotide-binding domain
1111111119Cytochrome c
13101189995983Double-stranded RNA binding motif
18117111116157EF hand
13264Fe-4S binding domain
11114Fibronectin type III domain
251513991061021118Glutathione S-transferase, C-terminal domain
12111111110Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
11Hemopexin
11891315118101196Homeodomain
32322213220lactate/malate dehydrogenase, NAD binding domain
977676641062Myosin head (motor domain)
3192272631281281331431182561,715Cytochrome P450
2722711862012032012111232741,942Protein kinase domain
201533131314141512149Pyridine nucleotide-disulphide oxidoreductase
333628262625272428253Ras family
111211119911111398Response regulator receiver domain
3622520152230210162RNase H
796875666865686865622RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
1146Reverse transcriptase (RNA-dependent DNA polymerase)
22222223219Iron/manganese superoxide dismutases, alpha-hairpin domain
326513111215525115Subtilase family
776554494749473350471Sugar (and other) transporter
12171211101110915107Thioredoxin
125665555554Tubulin/FtsZ family, GTPase domain
15114112236von Willebrand factor type A domain
9647101333030312737432Zinc finger, C2H2 type
79197420161812399286Zinc finger, C3HC4 type (RING finger)
2817471287131416162Zinc knuckle
23632222426Protein-tyrosine phosphatase
1611121529690858663106951short chain dehydrogenase
926559525153504556523Zinc-binding dehydrogenase
56555554444Thiolase, N-terminal domain
1071069585868Beta-ketoacyl synthase, N-terminal domain
413121132182Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
11111111210Enolase, C-terminal TIM barrel domain
997988881076Glutamine amidotransferase class-I
10111211101010101195TCP-1/cpn60 chaperonin family
44333334330Glutamine synthetase, catalytic domain
1111111119Triosephosphate isomerase
12171217161518820135E1-E2 ATPase
392427161717181623197Core histone H2A/H2B/H3/H4
22Copper binding proteins, plastocyanin/azurin family
1820121212121197113Alpha amylase, catalytic domain
65566555548Phorbol esters/diacylglycerol binding domain (C1 domain)
65555555647Bacterial transferase hexapeptide (six repeats)
49444443440tRNA synthetases class I (I, L, M and V)
241115161616141316141Cyclin, N-terminal domain
814648202320292037324Carboxylesterase family
56455644544DNA polymerase family B
33343333328ATP synthase subunit C
3318131111111077121Peroxidase
1415533322653Beta-lactamase
547444431348C-5 cytosine-specific DNA methylase
313130232525232535248Calcineurin-like phosphoesterase
142916222122201020174Cellulase (glycosyl hydrolase family 5)
76887676661tRNA synthetases class II (D, K and N)
404240383837373540347Mitochondrial carrier protein
1113recA bacterial DNA recombination protein
192823151616181620171Aminotransferase class I and II
66744446546Phosphoribosyl transferase domain
171720151515151116141Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11211111110Phosphoglycerate kinase
12222222217Ribosomal protein S4/S9 N-terminal domain
22222222218Ribosomal protein S12/S23
1111111119Chaperonin 10 Kd subunit
211517161515141615144C2 domain
20112010897168109PH domain
517816151515919119bZIP transcription factor
221837192120191523194Aldehyde dehydrogenase family
13499108728277753071748Fungal Zn(2)-Cys(6) binuclear cluster domain
323122242623251824225Cytochrome b5-like Heme/Steroid binding domain
33223223222Oxidoreductase molybdopterin binding domain
181712898810999Oxidoreductase NAD-binding domain
282729283328252432254SNF2 family N-terminal domain
13222221217Ribosomal protein S7p/S5e
272425222222242124211Ubiquitin-conjugating enzyme
78765666657Isocitrate/isopropylmalate dehydrogenase
32222222219Ribosomal Proteins L2, RNA binding domain
95232332231Hsp90 protein
22322222219Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111111119Dihydrofolate reductase
62433334331Cysteine-rich secretory protein family
1111111119Ribosomal protein S3, C-terminal domain
109311122332Cupin
22623322527Annexin
11Eukaryotic-type carbonic anhydrase
333333333272-oxoacid dehydrogenases acyltransferase (catalytic domain)
37521123125Catalase
1111111119Disintegrin
2117117771051499UDP-glucoronosyl and UDP-glucosyl transferase
413555555552Aminotransferase class-III
22222222218Ribosomal protein S19
21211111111DNA gyrase B
36423343533Thiamine pyrophosphate enzyme, central domain
44444444537Lyase
324222222250Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
22211111112Adenylate and Guanylate cyclase catalytic domain
1111111119ATP synthase delta (OSCP) subunit
1111111119Orotidine 5'-phosphate decarboxylase / HUMPS family
24222222321Indole-3-glycerol phosphate synthase
22322222724Aromatic amino acid lyase
1111111119Pyruvate kinase, barrel domain
1511111312129912104Kinesin motor domain
333431343332312632286DnaJ domain
171514151615141414134Proteasome subunit
68623343540Major intrinsic protein
21211111111ATP synthase
113332333334Glycosyl hydrolase family 1
121111111103'5'-cyclic nucleotide phosphodiesterase
1111111119Profilin
12222222217Ribosomal protein L22p/L17e
22222222218Ribosomal protein L14p/L23e
222415171716201422167Ubiquitin family
55555555646Cofilin/tropomyosin-type actin-binding protein
7222225222614-3-3 protein
1214Alkaline phosphatase
111115Zinc carboxypeptidase
877665444345454364512Aldo/keto reductase family
211022109991715122Myb-like DNA-binding domain
56876583755Forkhead domain
2619Glycosyl hydrolases family 32 N-terminal domain
12122221215Ribosomal protein L16p/L10e
22222222218Ribosomal protein S14p/S29e
44433334533FKBP-type peptidyl-prolyl cis-trans isomerase
1111111119Glutathione peroxidase
1113
11Dehydrin
126756567458Flavodoxin
11Protamine P1
12111111110Calreticulin family
271344425243Common central domain of tyrosinase
710121010101061489Aminotransferase class-V
685332621045Ribonucleotide reductase, small chain
869752616357744995634DEAD/DEAH box helicase
1201159894928610083117905Helicase conserved C-terminal domain
111111118Fructose-bisphosphate aldolase class-I
1111111119EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22222222218Ribosomal protein L23
23311113116Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11111151113Ribosomal protein L5
75557554346Pyridoxal-dependent decarboxylase conserved domain
47344443437Citrate synthase, C-terminal domain
65655555749GHMP kinases N terminal domain
66666666654Biotin carboxylase, N-terminal domain
12211111212Tryptophan synthase alpha chain
89999987775Pyridoxal-phosphate dependent enzyme
181918171617171216150NUDIX domain
67566663651pfkB family carbohydrate kinase
19171916131511814132Glycosyl hydrolases family 28
172221222232Ribosomal protein L3
22222232219Ribosomal protein L11, RNA binding domain
14171111121212613108Histidine phosphatase superfamily (branch 1)
11121111110Thymidylate synthase
1211117Lipoxygenase
45445544540ATP synthase alpha/beta chain, C terminal domain
54544445540Calponin homology (CH) domain
63633335436Glutamine amidotransferases class-II
22222222218Ribosomal protein S15
971145433753Thaumatin family
1111111119Fructose-1-6-bisphosphatase, N-terminal domain
72142322225Ribonucleotide reductase, all-alpha domain
22222222218Ribosomal protein S2
64333332229SRF-type transcription factor (DNA-binding and dimerisation domain)
202222181513111016147GATA zinc finger
411234877102011150Amino acid permease
15206888851189Prolyl oligopeptidase family
12122231216Ribosomal protein L30p/L7e
1211141011101081298Histidine phosphatase superfamily (branch 2)
1111111119Respiratory-chain NADH dehydrogenase, 30 Kd subunit
55574445645Aconitase family (aconitate hydratase)
75533334336Glycosyl hydrolase family 10
43443342431Glycosyl hydrolases family 17
22222222218Ribosomal protein S5, N-terminal domain
33222222220Nucleoside diphosphate kinase
22344431326Tetraspanin family
22222222218Ribosomal protein S10p/S20e
22211242218Arrestin (or S-antigen), N-terminal domain
1111111119Phosphoglucose isomerase
23111111112Carbohydrate phosphorylase
12111111110SecY translocase
21111111110Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222222218Ribosomal protein L6
691067677967Polyprenyl synthetase
22222222218Hexokinase
101271012994982Dynamin family
1111111119Transcription factor TFIID (or TATA-binding protein, TBP)
53333323328Rieske [2Fe-2S] domain
11111218Phytochrome region
999898108878Biotin-requiring enzyme
1111111119Phosphofructokinase
22222221217Ribosomal protein S17
122112111122Hydroxymethylglutaryl-coenzyme A reductase
44444444436FGGY family of carbohydrate kinases, N-terminal domain
109141110109101699Enoyl-CoA hydratase/isomerase
22222222218Ribosomal protein S9/S16
24232222221Transcription factor TFIIB repeat
67866663654Cytidine and deoxycytidylate deaminase zinc-binding region
1111111119Molybdopterin oxidoreductase
161110897771388Chromo (CHRromatin Organisation MOdifier) domain
33333332326Phosphatidylinositol-specific phospholipase C, Y domain
45376673546Phosphatidylinositol-specific phospholipase C, X domain
917689887779D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
32333332426Malic enzyme, N-terminal domain
122111111116-phosphogluconate dehydrogenase, C-terminal domain
25211914141415820150Multicopper oxidase
891288888776WW domain
52222221220Ribosomal RNA adenine dimethylase
2611854061431441231321141781,686WD domain, G-beta repeat
44445442435Heavy-metal-associated domain
44343433331Adenylate kinase
13122231217Phosphoglucomutase/phosphomannomutase, C-terminal domain
12122221215Ribosomal protein S8
22243322222Ribosomal protein S11
46666675753LIM domain
11Matrixin
310366665348Regulator of chromosome condensation (RCC1) repeat
22223222219Ribosomal protein S13/S18
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
11REV protein (anti-repression trans-activator protein)
22222223219chorismate binding enzyme
4544343333360s Acidic ribosomal protein
45434435335Prenyltransferase and squalene oxidase repeat
85755568655Protein kinase C terminal domain
1111111119Single-strand binding protein family
12111111110S-adenosylmethionine synthetase, N-terminal domain
141611111111151011110Bromodomain
10811777871075Acyl-CoA dehydrogenase, C-terminal domain
151515141614161512132Ubiquitin carboxyl-terminal hydrolase
11111117Ribosomal protein L36
33322221119Ribonuclease T2 family
54544444438HSF-type DNA-binding
22222222218SRP54-type protein, GTPase domain
11111111210Urease alpha-subunit, N-terminal domain
221315151312111214127Serine carboxypeptidase
159889888881Phosphatidylinositol 3- and 4-kinase
12322223118Transketolase, thiamine diphosphate binding domain
6642222428Glycosyl hydrolases family 11
11114WHEP-TRS domain
54333323430Inositol monophosphatase family
55555555545Glutaredoxin
62522223226Isocitrate lyase family
11411111112Serine hydroxymethyltransferase
32322223322Iron-containing alcohol dehydrogenase
12322221116Ribosomal protein L10
522555555663KOW motif
11111117Ribosomal protein L34
1111116Ribosomal protein L33
23233332324RF-1 domain
43233333226Sodium:solute symporter family
111111118Imidazoleglycerol-phosphate dehydratase
21111111110DNA polymerase family A
1111111119IMP dehydrogenase / GMP reductase domain
21511113116Glucose-6-phosphate dehydrogenase, NAD binding domain
15151312121113927127Protein phosphatase 2C
34333332327Nucleotidyl transferase
44455452538Carbonic anhydrase
1111111119Phosphoribulokinase / Uridine kinase family
20159131312121316123Fatty acid desaturase
99766666762MutS domain V
1111111119Delta-aminolevulinic acid dehydratase
57544445543Arginase family
77666676657MCM P-loop domain
12122221316Squalene/phytoene synthase
151614101315121123129FHA domain
677077414038383682489AMP-binding enzyme
302625151414151423176G-protein alpha subunit
252228252424211430213HMG (high mobility group) box
87866478660His Kinase A (phospho-acceptor) domain
221222242230Armadillo/beta-catenin-like repeat
1021964171519202519300Tetratricopeptide repeat
34333373332Ion transport protein
22411111114DNA gyrase/topoisomerase IV, subunit A
1299912898783BRCA1 C Terminus (BRCT) domain
87867666660Glycosyl transferases group 1
42633333532Glycosyl transferase family 2
21242222219SAM domain (Sterile alpha motif)
34454443334linker histone H1 and H5 family
1111111119Ribosomal protein L7/L12 C-terminal domain
3111219Pectate lyase
1132222114ribonuclease
11111111311Urease, gamma subunit
44433343432CoA-ligase
241716121311131414134Phosphopantetheine attachment site
22222221217Formyl transferase
111110111111111016102Metallopeptidase family M24
17620111215366Leucine Rich Repeat
73165476993716227alpha/beta hydrolase fold
35333443331RNA polymerase Rpb2, domain 6
66455564950PB1 domain
22222222218Staphylococcal nuclease homologue
11131312121212915109Rab-GTPase-TBC domain
1111111119Tudor domain
1311122213WH1 domain
44433333532Zinc finger, ZZ type
1111111119HRDC domain
1058886781070CBS domain
22222222218Ribosomal protein L13
22232332221Ribosomal protein L4/L1 family
111111219Clp protease
64344453437S1 RNA binding domain
1111111119HIUase/Transthyretin family
961055456858AhpC/TSA family
54444444538tRNA synthetases class I (W and Y)
13122231217UvrD/REP helicase N-terminal domain
49688884964Rhodanese-like domain
22222222218Universal stress protein family
552840242126242025263Acetyltransferase (GNAT) family
111111118SecE/Sec61-gamma subunits of protein translocation complex
1111111119C-terminal regulatory domain of Threonine dehydratase
22222222218AIR synthase related protein, N-terminal domain
77655586554tRNA synthetase class II core domain (G, H, P, S and T)
11Phage integrase family
42444433230Tetrapyrrole (Corrin/Porphyrin) Methylases
22222221217Glycosyl transferase family, a/b domain
104644442543Class II Aldolase and Adducin N-terminal domain
44444444537Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
66666665653Fes/CIP4, and EFC/F-BAR homology domain
42322223222IQ calmodulin-binding motif
74223222226Phosphoinositide 3-kinase family, accessory domain (PIK domain)
42422223122Phospholipase D Active site motif
22133321421Regulator of G protein signaling domain
44644444438GTPase-activator protein for Ras-like GTPase
99679776666RasGEF domain
78766757558RasGEF N-terminal motif
121111111111131113104RhoGAP domain
191619171716151322154RhoGEF domain
54444433536SPRY domain
84533343336RNA polymerase Rpb1, domain 2
1111111119Guanylate kinase
33443344432Gelsolin repeat
79945559659UBA/TS-N domain
211517151514151414140PHD-finger
212222213GGL domain
56677565653HECT-domain (ubiquitin-transferase)
11111117Helix-hairpin-helix motif
1111111119MSP (Major sperm protein) domain
1051033345447Ribonuclease III domain
145245452445Region in Clathrin and VPS
33366542537RanBP1 domain
12211222215PPIC-type PPIASE domain
33422233224Zn-finger in Ran binding protein and others
301428121012111911147Zinc finger C-x8-C-x5-C-x3-H type (and similar)
111111118B-box zinc finger
129566643960Poly(ADP-ribose) polymerase catalytic domain
53222221221Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
24626185312824334765685F-box domain
42111111113Elongation factor 1 gamma, conserved domain
12211242116Calpain family cysteine protease
3333333324Copper fist DNA binding domain
983777778898CRAL/TRIO domain
11271015161517723141BTB/POZ domain
7141211320Ricin-type beta-trefoil lectin domain
1111111119Inhibitor of Apoptosis domain
33333333327Voltage gated chloride channel
138206665638108Caspase domain
121211111291051395GDSL-like Lipase/Acylhydrolase
22222222218Poly-adenylate binding protein, unique domain
22111111111POLO box duplicated region
464230232322202123250ABC transporter transmembrane region
9716Integrase core domain
65445455442FAD binding domain
102422213531Condensation domain
1111111119S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11211111211HAMP domain
22222252221ribosomal L5P family C-terminus
95655555550Insulinase (Peptidase family M16)
44454444538Dehydrogenase E1 component
1111111119Lumazine binding domain
1398777771075Elongation factor G C-terminus
45565555444HMGL-like
44444444436DnaJ central domain
47455543542Starch binding domain
23233432426Ribosomal protein L1p/L10e family
44555554845Cation transporting ATPase, C-terminus
76755555954Cation transporter/ATPase, N-terminus
14111111213dUTPase
65564445544Aconitase C-terminal domain
35333343330Amino acid kinase family
1111111119N-(5'phosphoribosyl)anthranilate (PRA) isomerase
16101268585676Acyl transferase domain
11111111311Urease beta subunit
43322233224Dihydrodipicolinate synthetase family
351236121312142415173haloacid dehalogenase-like hydrolase
33333333