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PFAM Domains • Trichoderma guizhouense NJAU 4742
Annotations/GenomesTrias1Triasp1Triat2Trici4Trigam1Trigui1Triha1Trihar1Trilo3Trire2TriviGv29_8_2TotalAnnotation Description
PFAMs
9,1179,0729,1407,92911,20511,89310,18510,2017,5216,5079,844102,614
1127 transmembrane receptor (rhodopsin family)
22157 transmembrane receptor (Secretin family)
4648514651565253444449540ATPase family associated with various cellular activities (AAA)
5653474848586162474662588ABC transporter
4443644434444ATP synthase alpha/beta family, nucleotide-binding domain
1414131415161514141414157Elongation factor Tu GTP binding domain
1211108111011119910112Helix-loop-helix DNA-binding domain
5553534433545Hsp20/alpha crystallin family
8888141499878101Hsp70 protein
98910888898994KH domain
1111111119SH2 domain
2222212214132222222422226SH3 domain
1010109101010101079105Actin
11711713582485015416080631711,177Ankyrin repeat
4422214422431PAN domain
7677677777775ADP-ribosylation factor family
2020201923252222161621224Eukaryotic aspartyl protease
4444444444444Cyclic nucleotide-binding domain
11Cytochrome b(C-terminal)/b6/petD
1111111111111Cytochrome c
12111112111Double-stranded RNA binding motif
18191816121716162018161EF hand
11111111111114Fe-4S binding domain
4332112221223Fibronectin type III domain
2223222222223Globin
1822231318183130131027223Glutathione S-transferase, C-terminal domain
1111122211215Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
1311107451010851194Homeodomain
3332333322330lactate/malate dehydrogenase, NAD binding domain
112Lipocalin / cytosolic fatty-acid binding protein family
4454554444548Myosin head (motor domain)
72756673711101161176669118953Cytochrome P450
1051081121071111201111121011061261,219Protein kinase domain
2221221517202525151425221Pyridine nucleotide-disulphide oxidoreductase
2425242324252424222325263Ras family
1516151315141414131314156Response regulator receiver domain
2132733132532RNase H
5961605553525858565957628RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
41117Reverse transcriptase (RNA-dependent DNA polymerase)
2221322222222Copper/zinc superoxide dismutase (SODC)
2222223322325Iron/manganese superoxide dismutases, alpha-hairpin domain
2723361846433429151529315Subtilase family
7879746089969090547686872Sugar (and other) transporter
1212121112131313111114134Thioredoxin
2222123321222Trypsin
5555555556556Tubulin/FtsZ family, GTPase domain
445414442436von Willebrand factor type A domain
6466625315187375556763611Zinc finger, C2H2 type
39393839543939393238351Zinc finger, C3HC4 type (RING finger)
55956610735970Zinc knuckle
3332333322229Protein-tyrosine phosphatase
1601621701241671841992021161181811,783short chain dehydrogenase
797788597990106105495392877Zinc-binding dehydrogenase
6655775556562Thiolase, N-terminal domain
2022221823303233161726259Beta-ketoacyl synthase, N-terminal domain
55553345555502Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
2221121111216Enolase, C-terminal TIM barrel domain
11125Cytochrome C and Quinol oxidase polypeptide I
8889891111871097Glutamine amidotransferase class-I
1010101010101010101010110TCP-1/cpn60 chaperonin family
2322256622436Glutamine synthetase, catalytic domain
2222222222222Triosephosphate isomerase
1718161621221818181619199E1-E2 ATPase
8778799977987Core histone H2A/H2B/H3/H4
1113Copper binding proteins, plastocyanin/azurin family
5544866644557Alpha amylase, catalytic domain
1121221122217Phorbol esters/diacylglycerol binding domain (C1 domain)
108128981096812100Bacterial transferase hexapeptide (six repeats)
4443664436448tRNA synthetases class I (I, L, M and V)
8887778877984Cyclin, N-terminal domain
2020191421303333141228244Carboxylesterase family
4444444444444DNA polymerase family B
4463644444447ATP synthase subunit C
6666688856772Peroxidase
1618197172019208818170Beta-lactamase
2222222221221C-5 cytosine-specific DNA methylase
2931302527272729282732312Calcineurin-like phosphoesterase
1111107111199641099Cellulase (glycosyl hydrolase family 5)
8879989978890tRNA synthetases class II (D, K and N)
3838383437364039353538408Mitochondrial carrier protein
2122201825252828181629250Aminotransferase class I and II
88108858988888Phosphoribosyl transferase domain
101110910101010101010110Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111111111111Phosphoglycerate kinase
2222222212221Ribosomal protein S4/S9 N-terminal domain
2222222222323Ribosomal protein S12/S23
4441333311229Bacterial regulatory helix-turn-helix proteins, AraC family
1111111111111Chaperonin 10 Kd subunit
14141213991414151413141C2 domain
19181720881919161917180PH domain
1211121119181313121114146bZIP transcription factor
2625252327423939192031316Aldehyde dehydrogenase family
3253182762142082114054212131923103,093Fungal Zn(2)-Cys(6) binuclear cluster domain
2423242124252727192125260Cytochrome b5-like Heme/Steroid binding domain
4334344444441Oxidoreductase molybdopterin binding domain
2020181816202121161423207Oxidoreductase NAD-binding domain
2625272426272829252527289SNF2 family N-terminal domain
2222222222222Ribosomal protein S7p/S5e
1920201920202021212020220Ubiquitin-conjugating enzyme
7777879977883Isocitrate/isopropylmalate dehydrogenase
2222222222222Ribosomal Proteins L2, RNA binding domain
1111111111111Hsp90 protein
2222222212221Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111111111111Dihydrofolate reductase
6551335512541Chitin recognition protein
3333323333332Cysteine-rich secretory protein family
111111111110Ribosomal protein S3, C-terminal domain
4453544443444Cupin
3332333322229Annexin
1111111111111Eukaryotic-type carbonic anhydrase
33433333334352-oxoacid dehydrogenases acyltransferase (catalytic domain)
7877887777780Catalase
111211111111Disintegrin
1267221223UDP-glucoronosyl and UDP-glucosyl transferase
1088991211118810104Aminotransferase class-III
2222222222222Ribosomal protein S19
1111111111111DNA gyrase B
91084988854982Thiamine pyrophosphate enzyme, central domain
4334445533341Lyase
2222222222222Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1111111111111Adenylate and Guanylate cyclase catalytic domain
1111111111111ATP synthase delta (OSCP) subunit
1111111111111Orotidine 5'-phosphate decarboxylase / HUMPS family
1111111111111Indole-3-glycerol phosphate synthase
111115Aromatic amino acid lyase
1111111111111Pyruvate kinase, barrel domain
9810910101010101110107Kinesin motor domain
2524262626252626262625281DnaJ domain
1414141414141414141414154Proteasome subunit
6677778877878Major intrinsic protein
1111111111111ATP synthase
2342334422231Glycosyl hydrolase family 1
11111111111113'5'-cyclic nucleotide phosphodiesterase
1111111111111Profilin
1111221111113Ribosomal protein L22p/L17e
2222222222222Ribosomal protein L14p/L23e
11121210811121113812120Ubiquitin family
5555555543552Cofilin/tropomyosin-type actin-binding protein
222233222232514-3-3 protein
2223123323326Alkaline phosphatase
4444444444444Zinc carboxypeptidase
3638362940474647282745419Aldo/keto reductase family
14151314791514131415143Myb-like DNA-binding domain
4444444444444Forkhead domain
221218Glycosyl hydrolases family 32 N-terminal domain
1111221111113Ribosomal protein L16p/L10e
2222222221221Ribosomal protein S14p/S29e
3333333343334FKBP-type peptidyl-prolyl cis-trans isomerase
1111111111111Glutathione peroxidase
22222222218
8977678877882Flavodoxin
1111111111111Calreticulin family
4434423332436Common central domain of tyrosinase
998889101073889Aminotransferase class-V
1111111111111Ribonucleotide reductase, small chain
3838373848443837364936439DEAD/DEAH box helicase
7274747373737974757573815Helicase conserved C-terminal domain
1111111111111EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
2222222222222Ribosomal protein L23
1111111111111Pyridoxal-dependent decarboxylase, C-terminal sheet domain
2221222212220Ribosomal protein L5
9785987746777Pyridoxal-dependent decarboxylase conserved domain
3322332222226Citrate synthase, C-terminal domain
5555555535553GHMP kinases N terminal domain
5564687735763Biotin carboxylase, N-terminal domain
1111111111111Tryptophan synthase alpha chain
1414131213151515121215150Pyridoxal-phosphate dependent enzyme
1817181516162121151522194NUDIX domain
4546454564552pfkB family carbohydrate kinase
5565664444655Glycosyl hydrolases family 28
347Luciferase-like monooxygenase
2222222222222Ribosomal protein L3
2222222222222Ribosomal protein L11, RNA binding domain
11111111111414149612124Histidine phosphatase superfamily (branch 1)
1111111111111Thymidylate synthase
1111217Lipoxygenase
4443644434444ATP synthase alpha/beta chain, C terminal domain
5555555545554Calponin homology (CH) domain
4555236654651Glutamine amidotransferases class-II
2222222222222Ribosomal protein S15
111111111110Thaumatin family
2222222222222Fructose-1-6-bisphosphatase, N-terminal domain
1111111111111Ribonucleotide reductase, all-alpha domain
2222222222222Ribosomal protein S2
3122322322224SRF-type transcription factor (DNA-binding and dimerisation domain)
8888788886885GATA zinc finger
3634353518213940323336359Amino acid permease
3334677641549Prolyl oligopeptidase family
2222222222222Ribosomal protein L30p/L7e
8886678874878Histidine phosphatase superfamily (branch 2)
1111111111111Respiratory-chain NADH dehydrogenase, 30 Kd subunit
6665667744663Aconitase family (aconitate hydratase)
2311322211220Glycosyl hydrolase family 10
3333112221324Glycosyl hydrolases family 17
2222222222222Ribosomal protein S5, N-terminal domain
1111111111111Nucleoside diphosphate kinase
11Tetraspanin family
1111221111113Ribosomal protein S10p/S20e
3223332233228Arrestin (or S-antigen), N-terminal domain
1111111111111Phosphoglucose isomerase
1111111111111Carbohydrate phosphorylase
1111111111111SecY translocase
1111111111111Respiratory-chain NADH dehydrogenase, 49 Kd subunit
2223222222223Ribosomal protein L6
4534344433340Polyprenyl synthetase
4443455544547Hexokinase
1010109111111108911110Dynamin family
2111111111112Transcription factor TFIID (or TATA-binding protein, TBP)
4444234444441Rieske [2Fe-2S] domain
1113Phytochrome region
22Proton-conducting membrane transporter
778781099661087Biotin-requiring enzyme
1111111111111Phosphofructokinase
2222222222222Ribosomal protein S17
1111111111111Hydroxymethylglutaryl-coenzyme A reductase
3333333333333FGGY family of carbohydrate kinases, N-terminal domain
1515151517222223141218188Enoyl-CoA hydratase/isomerase
2222222222222Ribosomal protein S9/S16
2222232222223Transcription factor TFIIB repeat
6775777756670Cytidine and deoxycytidylate deaminase zinc-binding region
1111111121112Molybdopterin oxidoreductase
6677767661968Chromo (CHRromatin Organisation MOdifier) domain
4442444444442Phosphatidylinositol-specific phospholipase C, Y domain
5553665556657Phosphatidylinositol-specific phospholipase C, X domain
1010108131313135512112D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2222222222222Malic enzyme, N-terminal domain
1111116PEP-utilising enzyme, mobile domain
22212222111186-phosphogluconate dehydrogenase, C-terminal domain
10101091088878997Multicopper oxidase
111011111010101081010111WW domain
1111211111112Ribosomal RNA adenine dimethylase
111112119Yeast PIR protein repeat
1281281381181241211471481141231481,437WD domain, G-beta repeat
5554444455550Heavy-metal-associated domain
4334445444342Adenylate kinase
2222222222222Phosphoglucomutase/phosphomannomutase, C-terminal domain
1211222222219Ribosomal protein S8
1111221111113Ribosomal protein S11
4434344434441LIM domain
112111551523Matrixin
2221251121120Regulator of chromosome condensation (RCC1) repeat
2222222222222Ribosomal protein S13/S18
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
2222222222222chorismate binding enzyme
333333333333360s Acidic ribosomal protein
4444344444443Prenyltransferase and squalene oxidase repeat
6676366675866Protein kinase C terminal domain
1111311111113Single-strand binding protein family
1111111111111S-adenosylmethionine synthetase, N-terminal domain
7777887777779Bromodomain
109108101011115810102Acyl-CoA dehydrogenase, C-terminal domain
1414131413131414141514152Ubiquitin carboxyl-terminal hydrolase
1111111111111Ribosomal protein L36
3343444433540Ribonuclease T2 family
3333333333434HSF-type DNA-binding
2221222222221SRP54-type protein, GTPase domain
111211111111Urease alpha-subunit, N-terminal domain
6775888845773Serine carboxypeptidase
8887888888887Phosphatidylinositol 3- and 4-kinase
2222333322226Transketolase, thiamine diphosphate binding domain
4443444433441Glycosyl hydrolases family 11
4344455544547Inositol monophosphatase family
4444444443443Glutaredoxin
5543225532440Isocitrate lyase family
2222322222223Serine hydroxymethyltransferase
2222236622332Iron-containing alcohol dehydrogenase
2222222212221Ribosomal protein L10
3333223326333KOW motif
11Ribosomal protein L34
11Negative factor, (F-Protein) or Nef
3323233332330RF-1 domain
5544455555552Sodium:solute symporter family
1111111111111Imidazoleglycerol-phosphate dehydratase
1111111111111DNA polymerase family A
1111111111111IMP dehydrogenase / GMP reductase domain
1111111111111Glucose-6-phosphate dehydrogenase, NAD binding domain
6667667756769Protein phosphatase 2C
3333433323333Nucleotidyl transferase
7694551314541082Carbonic anhydrase
1111121112113Phosphoribulokinase / Uridine kinase family
7777976656673Fatty acid desaturase
6666666666666MutS domain V
1111111111111Delta-aminolevulinic acid dehydratase
5433455533444Arginase family
6665666666665MCM P-loop domain
1111221111113Squalene/phytoene synthase
9910981210108812105FHA domain
5859494349545757323764559AMP-binding enzyme
3333333333333G-protein alpha subunit
76687877871081HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
121212101211111191011121His Kinase A (phospho-acceptor) domain
3333323333332Armadillo/beta-catenin-like repeat
2931352114143631222440297Tetratricopeptide repeat
4444233345440Ion transport protein
1111111111111DNA gyrase/topoisomerase IV, subunit A
111211111091111111111119BRCA1 C Terminus (BRCT) domain
6666656666665Glycosyl transferases group 1
3344224443336Glycosyl transferase family 2
1111111113113SAM domain (Sterile alpha motif)
1111111111111linker histone H1 and H5 family
1111111111111Ribosomal protein L7/L12 C-terminal domain
112Pectate lyase
3322222211222ribonuclease
1112111111112Urease, gamma subunit
5555555545554CoA-ligase
3331292337454240141943356Phosphopantetheine attachment site
3334333333334Formyl transferase
981110111110109810107Metallopeptidase family M24
15151416431414141613138Leucine Rich Repeat
5763694016238080382277565alpha/beta hydrolase fold
3333333333333RNA polymerase Rpb2, domain 6
3444444444443PB1 domain
2221222222221Staphylococcal nuclease homologue
101010111212101091010114Rab-GTPase-TBC domain
111111111110Tudor domain
111211111111WH1 domain
4545345445346Zinc finger, ZZ type
1111111111111HRDC domain
9998769999993CBS domain
2222222222222Ribosomal protein L13
2222222222222Ribosomal protein L4/L1 family
1111111111111Clp protease
5555555555555S1 RNA binding domain
1111111111111HIUase/Transthyretin family
5343464633445AhpC/TSA family
4444444444444tRNA synthetases class I (W and Y)
11215UvrD/REP helicase N-terminal domain
664710139964882Rhodanese-like domain
2222222222222Universal stress protein family
5556524531376161444065547Acetyltransferase (GNAT) family
1111111111111SecE/Sec61-gamma subunits of protein translocation complex
1111111111111C-terminal regulatory domain of Threonine dehydratase
2222222222222AIR synthase related protein, N-terminal domain
98109779998994tRNA synthetase class II core domain (G, H, P, S and T)
1111111111111SpoU rRNA Methylase family
2223222222223Tetrapyrrole (Corrin/Porphyrin) Methylases
1111111111111Glycosyl transferase family, a/b domain
1111111119PDZ domain
4442533333337Class II Aldolase and Adducin N-terminal domain
4443444444443Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
553