PFAM Domains • Rhodotorula sp. J31 v1.0
Annotations/GenomesHetpy1Hyabl1Leucr1Mereb1Micvi1Rhoba1_1RhodotJ31_1Rhoto1Spopa1Sporo1TotalAnnotation Description
PFAMs
5,5785,6218,6307,8996,2645,9497,2016,4587,3494,22265,171
117 transmembrane receptor (rhodopsin family)
33333037343233363129328ATPase family associated with various cellular activities (AAA)
28304143303129303031323ABC transporter
444444454441ATP synthase alpha/beta family, nucleotide-binding domain
11114EGF-like domain
14141513131314131414137Elongation factor Tu GTP binding domain
91081097898381Helix-loop-helix DNA-binding domain
8210Hsp20/alpha crystallin family
779977888676Hsp70 protein
886899676976KH domain
111115SH2 domain
25231322262112231417196SH3 domain
9910109910910792Actin
17173191918219413131Ankyrin repeat
11PAN domain
777777777770ADP-ribosylation factor family
13131530181112121512151Eukaryotic aspartyl protease
333443333332Cyclic nucleotide-binding domain
11Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
111111118Cytochrome c
1124123115Double-stranded RNA binding motif
16162181614215417120EF hand
1112221104Fe-4S binding domain
11111121110Fibronectin type III domain
112Globin
4411188104156585Glutathione S-transferase, C-terminal domain
112322221117Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
884845466457Homeodomain
1113Laminin EGF domain
222222222220lactate/malate dehydrogenase, NAD binding domain
565555555551Myosin head (motor domain)
101230291011101586141Cytochrome P450
14214810711311099100101100921,112Protein kinase domain
11111515141310131111124Pyridine nucleotide-disulphide oxidoreductase
25262528262424232524250Ras family
14152425151518171312168Response regulator receiver domain
22145281126RNase H
64666161595553565752584RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
1313Reverse transcriptase (RNA-dependent DNA polymerase)
11211112111Iron/manganese superoxide dismutases, alpha-hairpin domain
5573163366357Subtilase family
22246575283036374042399Sugar (and other) transporter
1111121312131414136119Thioredoxin
556665554451Tubulin/FtsZ family, GTPase domain
432442221von Willebrand factor type A domain
35351877302813341526311Zinc finger, C2H2 type
313410414233539514254Zinc finger, C3HC4 type (RING finger)
16118916951469103Zinc knuckle
552822324134Protein-tyrosine phosphatase
293067108484539513731485short chain dehydrogenase
19173150283123322731289Zinc-binding dehydrogenase
4571087666665Thiolase, N-terminal domain
111111111110Beta-ketoacyl synthase, N-terminal domain
4435443434382Fe-2S iron-sulfur cluster binding domain
111111212112Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
889888888679Glutamine amidotransferase class-I
101110101091111109101TCP-1/cpn60 chaperonin family
223222222221Glutamine synthetase, catalytic domain
111211211112Triosephosphate isomerase
12121415131013121210123E1-E2 ATPase
29202527231915151622211Core histone H2A/H2B/H3/H4
111111118Copper binding proteins, plastocyanin/azurin family
3341472433346Alpha amylase, catalytic domain
342352353131Phorbol esters/diacylglycerol binding domain (C1 domain)
556887867565Bacterial transferase hexapeptide (six repeats)
334333534637tRNA synthetases class I (I, L, M and V)
98109129111110897Cyclin, N-terminal domain
9101312791088591Carboxylesterase family
444464454443DNA polymerase family B
333433333432ATP synthase subunit C
222222222220Peroxidase
22982344337Beta-lactamase
222322223121C-5 cytosine-specific DNA methylase
18171622241717211614182Calcineurin-like phosphoesterase
1110512711139Cellulase (glycosyl hydrolase family 5)
444444444440tRNA synthetases class II (D, K and N)
33344144403537363734371Mitochondrial carrier protein
11recA bacterial DNA recombination protein
15151718151718191615165Aminotransferase class I and II
664666363652Phosphoribosyl transferase domain
13131112121212121211120Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
111111111110Phosphoglycerate kinase
222321222220Ribosomal protein S4/S9 N-terminal domain
222322222221Ribosomal protein S12/S23
11Bacterial regulatory helix-turn-helix proteins, AraC family
111111111110Chaperonin 10 Kd subunit
141511161410101298119C2 domain
20201123221810221012168PH domain
91019119101113114107bZIP transcription factor
12112127151113121111144Aldehyde dehydrogenase family
5446111193646350764723727Fungal Zn(2)-Cys(6) binuclear cluster domain
17182330222121231818211Cytochrome b5-like Heme/Steroid binding domain
212121514Oxidoreductase molybdopterin binding domain
777777685566Oxidoreductase NAD-binding domain
20202423242221222317216SNF2 family N-terminal domain
222221232220Ribosomal protein S7p/S5e
17172021222019192017192Ubiquitin-conjugating enzyme
556655755554Isocitrate/isopropylmalate dehydrogenase
222222222220Ribosomal Proteins L2, RNA binding domain
222222332222Hsp90 protein
221232222321Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111111111110Dihydrofolate reductase
11Chitin recognition protein
45352233330Cysteine-rich secretory protein family
111111111110Ribosomal protein S3, C-terminal domain
11Cupin
111227Annexin
2215Eukaryotic-type carbonic anhydrase
3333343444342-oxoacid dehydrogenases acyltransferase (catalytic domain)
114213222119Catalase
111111111110Disintegrin
31116UDP-glucoronosyl and UDP-glucosyl transferase
667955555558Aminotransferase class-III
232212222220Ribosomal protein S19
111121111111DNA gyrase B
113434433329Thiamine pyrophosphate enzyme, central domain
333353333332Lyase
221222222219Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
112Sodium:neurotransmitter symporter family
221111111112Adenylate and Guanylate cyclase catalytic domain
111111111110ATP synthase delta (OSCP) subunit
111111111110Orotidine 5'-phosphate decarboxylase / HUMPS family
111112121112Indole-3-glycerol phosphate synthase
112111111111Aromatic amino acid lyase
111111111110Pyruvate kinase, barrel domain
999988888884Kinesin motor domain
24222327272729292722257DnaJ domain
14151314141514151414142Proteasome subunit
338545865552Major intrinsic protein
111111111110ATP synthase
11114Glycosyl hydrolase family 1
1111111111103'5'-cyclic nucleotide phosphodiesterase
121111111111Profilin
112111212113Ribosomal protein L22p/L17e
222222223221Ribosomal protein L14p/L23e
10101914111513221611141Ubiquitin family
453455444240Cofilin/tropomyosin-type actin-binding protein
22222222222014-3-3 protein
113443232225Alkaline phosphatase
111111111110Zinc carboxypeptidase
10103136181816171513184Aldo/keto reductase family
1412833131161166120Myb-like DNA-binding domain
443342222127Forkhead domain
11111117Glycosyl hydrolases family 32 N-terminal domain
112111212113Ribosomal protein L16p/L10e
222222222119Ribosomal protein S14p/S29e
333543333333FKBP-type peptidyl-prolyl cis-trans isomerase
111111111110Glutathione peroxidase
11111218
663444343340Flavodoxin
111111111110Calreticulin family
557765656355Aminotransferase class-V
112222222218Ribonucleotide reductase, small chain
39404945454148444947447DEAD/DEAH box helicase
70717778777574767367738Helicase conserved C-terminal domain
111111111110EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
221222222219Ribosomal protein L23
111111111110Pyridoxal-dependent decarboxylase, C-terminal sheet domain
221111111112Ribosomal protein L5
335545555545Pyridoxal-dependent decarboxylase conserved domain
223222333224Citrate synthase, C-terminal domain
564545555448GHMP kinases N terminal domain
555676666658Biotin carboxylase, N-terminal domain
11111112110Tryptophan synthase alpha chain
667967686566Pyridoxal-phosphate dependent enzyme
1010101211912121311110NUDIX domain
335534444338pfkB family carbohydrate kinase
451111Glycosyl hydrolases family 28
711110Luciferase-like monooxygenase
222222222220Ribosomal protein L3
112222222218Ribosomal protein L11, RNA binding domain
9914139101111105101Histidine phosphatase superfamily (branch 1)
111111121111Thymidylate synthase
444444364441ATP synthase alpha/beta chain, C terminal domain
444344444439Calponin homology (CH) domain
442474242437Glutamine amidotransferases class-II
323222321222Ribosomal protein S15
224243253229'Cold-shock' DNA-binding domain
33684345440Thaumatin family
111111111110Fructose-1-6-bisphosphatase, N-terminal domain
111111111110Ribonucleotide reductase, all-alpha domain
223232222222Ribosomal protein S2
444444444339SRF-type transcription factor (DNA-binding and dimerisation domain)
10111291081112127102GATA zinc finger
212324371718921916195Amino acid permease
557546558353Prolyl oligopeptidase family
112111212113Ribosomal protein L30p/L7e
4477107676462Histidine phosphatase superfamily (branch 2)
111111111110Respiratory-chain NADH dehydrogenase, 30 Kd subunit
445644444443Aconitase family (aconitate hydratase)
223111111Glycosyl hydrolases family 17
222222222220Ribosomal protein S5, N-terminal domain
222212222219Nucleoside diphosphate kinase
11Tetraspanin family
112111212214Ribosomal protein S10p/S20e
443524644137Arrestin (or S-antigen), N-terminal domain
111111111110Phosphoglucose isomerase
111111111110Carbohydrate phosphorylase
111111111110SecY translocase
111111111110Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222222220Ribosomal protein L6
333343333331Polyprenyl synthetase
232232222222Hexokinase
544333635440Dynamin family
111111111110Transcription factor TFIID (or TATA-binding protein, TBP)
224435342231Rieske [2Fe-2S] domain
411111110Phytochrome region
777688797874Biotin-requiring enzyme
111111211111Phosphofructokinase
222222212118Ribosomal protein S17
111111111110Hydroxymethylglutaryl-coenzyme A reductase
224332222224FGGY family of carbohydrate kinases, N-terminal domain
112Sodium:dicarboxylate symporter family
7791288877780Enoyl-CoA hydratase/isomerase
222222222119Ribosomal protein S9/S16
222322222221Transcription factor TFIIB repeat
6610777897471Cytidine and deoxycytidylate deaminase zinc-binding region
111112221113Molybdopterin oxidoreductase
524874686353Chromo (CHRromatin Organisation MOdifier) domain
11112111110Phosphatidylinositol-specific phospholipase C, Y domain
22112121113Phosphatidylinositol-specific phospholipase C, X domain
67131456746573D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
222222222220Malic enzyme, N-terminal domain
1111111111106-phosphogluconate dehydrogenase, C-terminal domain
335542441132Multicopper oxidase
22Granulin
6691167586872WW domain
112212212216Ribosomal RNA adenine dimethylase
9797106108121105100107102951,038WD domain, G-beta repeat
442332222226Heavy-metal-associated domain
332333333329Adenylate kinase
113222223220Phosphoglucomutase/phosphomannomutase, C-terminal domain
112211222216Ribosomal protein S8
111111211111Ribosomal protein S11
543675566350LIM domain
224334437234Regulator of chromosome condensation (RCC1) repeat
232222222221Ribosomal protein S13/S18
11REV protein (anti-repression trans-activator protein)
222222222220chorismate binding enzyme
33333333333060s Acidic ribosomal protein
773543243442Prenyltransferase and squalene oxidase repeat
776776474459Protein kinase C terminal domain
221111111112Single-strand binding protein family
111121111111S-adenosylmethionine synthetase, N-terminal domain
999999989787Bromodomain
881116121111121013112Acyl-CoA dehydrogenase, C-terminal domain
15151517141315161612148Ubiquitin carboxyl-terminal hydrolase
111111118Ribosomal protein L36
1132111111Ribonuclease T2 family
76151487131010494HSF-type DNA-binding
221222222219SRP54-type protein, GTPase domain
111121111111Urease alpha-subunit, N-terminal domain
554684445449Serine carboxypeptidase
778898788777Phosphatidylinositol 3- and 4-kinase
112311211114Transketolase, thiamine diphosphate binding domain
111122122215WHEP-TRS domain
223323333327Inositol monophosphatase family
444655554244Glutaredoxin
232422222223Isocitrate lyase family
111111111110Serine hydroxymethyltransferase
112212232218Iron-containing alcohol dehydrogenase
222122222219Ribosomal protein L10
653524454745KOW motif
1111116Ribosomal protein L34
111115Ribosomal protein L33
223312323122RF-1 domain
4522223222Sodium:solute symporter family
111121111111Imidazoleglycerol-phosphate dehydratase
111111111110DNA polymerase family A
121111111111IMP dehydrogenase / GMP reductase domain
111111111110Glucose-6-phosphate dehydrogenase, NAD binding domain
665676666559Protein phosphatase 2C
223232222222Nucleotidyl transferase
113413232222Carbonic anhydrase
112111212113Phosphoribulokinase / Uridine kinase family
558954455555Fatty acid desaturase
665666667761MutS domain V
111111111110Delta-aminolevulinic acid dehydratase
224312222222Arginase family
666666666660MCM P-loop domain
111122323218Squalene/phytoene synthase
876877969572FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
12122529231714161514177AMP-binding enzyme
1113111186479888G-protein alpha subunit
13146111187911797HMG (high mobility group) box
11Cytochrome c oxidase subunit III
1111212211131414109136His Kinase A (phospho-acceptor) domain
33333233225Armadillo/beta-catenin-like repeat
23241023242612311225210Tetratricopeptide repeat
112532333326Ion transport protein
111121111111DNA gyrase/topoisomerase IV, subunit A
89991079108584BRCA1 C Terminus (BRCT) domain
55611811988475Glycosyl transferases group 1
3341066445449Glycosyl transferase family 2
11111128SAM domain (Sterile alpha motif)
1212112111linker histone H1 and H5 family
111111111110Ribosomal protein L7/L12 C-terminal domain
11Pectate lyase
111121111111Urease, gamma subunit
333533333332CoA-ligase
225434333332Phosphopantetheine attachment site
222232222120Formyl transferase
99101010991010793Metallopeptidase family M24
16181171615316313118Leucine Rich Repeat
1515741222142577164alpha/beta hydrolase fold
333333333330RNA polymerase Rpb2, domain 6
327564565346PB1 domain
332221222120Staphylococcal nuclease homologue
9912111110129127102Rab-GTPase-TBC domain
111111111110Tudor domain
111111111110WH1 domain
323332232225Zinc finger, ZZ type
112132111HRDC domain
776997585467CBS domain
221222222219Ribosomal protein L13
222222222119Ribosomal protein L4/L1 family
1111111119Clp protease
442444444337S1 RNA binding domain
111111111110HIUase/Transthyretin family
333423333330AhpC/TSA family
444444444440tRNA synthetases class I (W and Y)
22232112116UvrD/REP helicase N-terminal domain
5510443939254Rhodanese-like domain
212522222121Universal stress protein family
15142026151716221518178Acetyltransferase (GNAT) family
111111111110SecE/Sec61-gamma subunits of protein translocation complex
111111111110C-terminal regulatory domain of Threonine dehydratase
222222222220AIR synthase related protein, N-terminal domain
665677565659tRNA synthetase class II core domain (G, H, P, S and T)
11Phage integrase family
232222222221Tetrapyrrole (Corrin/Porphyrin) Methylases
111111111110Glycosyl transferase family, a/b domain
11114PDZ domain
334723333334Class II Aldolase and Adducin N-terminal domain
1112121211Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
334433424232Fes/CIP4, and EFC/F-BAR homology domain
671333152637IQ calmodulin-binding motif
223222322222Phosphoinositide 3-kinase family, accessory domain (PIK domain)
332334242430Phospholipase D Active site motif
114111415120Regulator of G protein signaling domain
444453343337GTPase-activator protein for Ras-like GTPase
455554444343RasGEF domain
455564444142RasGEF N-terminal motif
12131315141312141211129RhoGAP domain
89121212101211128106RhoGEF domain
333333332228SPRY domain
333333333330RNA polymerase Rpb1, domain 2
111111111110Guanylate kinase
445533233335Gelsolin repeat
796966697368UBA/TS-N domain
18151518171614191411157PHD-finger
11111117GGL domain
666746666659HECT-domain (ubiquitin-transferase)
24121111Helix-hairpin-helix motif
112BRCA2 repeat
111111111110MSP (Major sperm protein) domain
3328471676359Ribonuclease III domain
224222525228Region in Clathrin and VPS
333222333327RanBP1 domain
221212221217PPIC-type PPIASE domain
11114Zn-finger in Ran binding protein and others
141481415151214810124Zinc finger C-x8-C-x5-C-x3-H type (and similar)
221211111