PFAM Domains • Rhodosporidium toruloides APA 2687 v1.0
Please note that this organism is for archival use only. Please see the current Rhodosporidium toruloides IFO0880 v4.0 site for the latest data and information.
Annotations/GenomesHetpy1Hyabl1Leucr1Mereb1Micvi1Rhoba1_1RhodotJ31_1Rhoglu1Rhomuc1Rhoto1Rhoto1_APA2687_1Rhoto_ATCC26217_1Rhoto_IFO0880_2Spopa1Sporo1TotalAnnotation Description
PFAMs
5,5785,6218,6307,8996,2645,9497,2017,5707,1466,4587,6457,6766,2927,3494,222101,500
117 transmembrane receptor (rhodopsin family)
333330373432333432363434363129498ATPase family associated with various cellular activities (AAA)
283041433031293030303030303031473ABC transporter
44444444454544462ATP synthase alpha/beta family, nucleotide-binding domain
111115EGF-like domain
141415131313141414131414131414206Elongation factor Tu GTP binding domain
910810978779771083119Helix-loop-helix DNA-binding domain
8210Hsp20/alpha crystallin family
7799778107899986120Hsp70 protein
886899656755769104KH domain
1111116SH2 domain
252313222621121513231516231417278SH3 domain
991010991010119101010107143Actin
17173191918223192218413158Ankyrin repeat
11PAN domain
777777777777777105ADP-ribosylation factor family
131315301811121212121312121512212Eukaryotic aspartyl protease
33344333333333347Cyclic nucleotide-binding domain
11Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
11111111111112Cytochrome c
112412133119Double-stranded RNA binding motif
16162181614222152214417142EF hand
11122221124Fe-4S binding domain
1111111221113Fibronectin type III domain
112Globin
44111881041241512111565139Glutathione S-transferase, C-terminal domain
11232222222221127Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
88484544566556482Homeodomain
1113Laminin EGF domain
22222222222122229lactate/malate dehydrogenase, NAD binding domain
56555555555555576Myosin head (motor domain)
1012302910111015101516141486210Cytochrome P450
1421481071131109910010798101104111100100921,632Protein kinase domain
111115151413101010131010131111177Pyridine nucleotide-disulphide oxidoreductase
252625282624242524232525232524372Ras family
141524251515181715171717161312250Response regulator receiver domain
2214521283181141RNase H
646661615955535751565654525752854RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
13720Reverse transcriptase (RNA-dependent DNA polymerase)
1121111212222120Iron/manganese superoxide dismutases, alpha-hairpin domain
557316336366666384Subtilase family
222465752830363636374241414042595Sugar (and other) transporter
11111213121314141414141413136188Thioredoxin
55666555555564477Tubulin/FtsZ family, GTPase domain
432442121225von Willebrand factor type A domain
353518773028131413341516291526398Zinc finger, C2H2 type
313410414233556394431514304Zinc finger, C3HC4 type (RING finger)
16118916955414661169135Zinc knuckle
55282233323224147Protein-tyrosine phosphatase
2930671084845394735514947533731716short chain dehydrogenase
191731502831232722322728342731427Zinc-binding dehydrogenase
457108766666666695Thiolase, N-terminal domain
11111111111111115Beta-ketoacyl synthase, N-terminal domain
443544333433434542Fe-2S iron-sulfur cluster binding domain
11111121211112118Enolase, C-terminal TIM barrel domain
112Cytochrome C and Quinol oxidase polypeptide I
112Cytochrome C oxidase subunit II, periplasmic domain
889888888888786118Glutamine amidotransferase class-I
1011101010911101011111110109153TCP-1/cpn60 chaperonin family
22322222223222232Glutamine synthetase, catalytic domain
11121121111111117Triosephosphate isomerase
121214151310131513121615101210192E1-E2 ATPase
292025272319151715152021181622302Core histone H2A/H2B/H3/H4
111111111111113Copper binding proteins, plastocyanin/azurin family
334147243433333362Alpha amylase, catalytic domain
34235232354353148Phorbol esters/diacylglycerol binding domain (C1 domain)
55688785767787599Bacterial transferase hexapeptide (six repeats)
33433354434434656tRNA synthetases class I (I, L, M and V)
9810912911111211111111108153Cyclin, N-terminal domain
91013127910710897885132Carboxylesterase family
44446444454644465DNA polymerase family B
33343333333333447ATP synthase subunit C
22222222222222230Peroxidase
2298234444443356Beta-lactamase
22232222222223131C-5 cytosine-specific DNA methylase
181716222417171718211716211614271Calcineurin-like phosphoesterase
111051278716911170Cellulase (glycosyl hydrolase family 5)
44444444444444460tRNA synthetases class II (D, K and N)
333441444035373636363736353734551Mitochondrial carrier protein
11recA bacterial DNA recombination protein
151517181517181718191719171615253Aminotransferase class I and II
66466633363363670Phosphoribosyl transferase domain
131311121212121211121212111211178Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111111111111115Phosphoglycerate kinase
22232122222222230Ribosomal protein S4/S9 N-terminal domain
22232222222222231Ribosomal protein S12/S23
11Bacterial regulatory helix-turn-helix proteins, AraC family
11111111111111115Chaperonin 10 Kd subunit
141511161410101091211111298172C2 domain
202011232218101311221212221012238PH domain
910191191011101313141411114169bZIP transcription factor
121121271511131413121414121111211Aldehyde dehydrogenase family
544611119364635056447654647547231,020Fungal Zn(2)-Cys(6) binuclear cluster domain
171823302221212319232122211818317Cytochrome b5-like Heme/Steroid binding domain
21213123321526Oxidoreductase molybdopterin binding domain
777777686888755103Oxidoreductase NAD-binding domain
202024232422212222222223222317327SNF2 family N-terminal domain
22222124233332235Ribosomal protein S7p/S5e
171720212220192019191920182017288Ubiquitin-conjugating enzyme
55665576655555581Isocitrate/isopropylmalate dehydrogenase
22222222222222230Ribosomal Proteins L2, RNA binding domain
22222232332232234Hsp90 protein
22123222222222331Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111111111111114Dihydrofolate reductase
11Chitin recognition protein
4535223333322343Cysteine-rich secretory protein family
11111111111111115Ribosomal protein S3, C-terminal domain
11Cupin
111227Annexin
2215Eukaryotic-type carbonic anhydrase
333334343454444542-oxoacid dehydrogenases acyltransferase (catalytic domain)
11421322222222129Catalase
11111112111111116Disintegrin
3111111110UDP-glucoronosyl and UDP-glucosyl transferase
66795555555555583Aminotransferase class-III
23221222222222230Ribosomal protein S19
11112111111111116DNA gyrase B
11343443433333345Thiamine pyrophosphate enzyme, central domain
33335333333333347Lyase
22122222222222229Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
112Sodium:neurotransmitter symporter family
22111111111111117Adenylate and Guanylate cyclase catalytic domain
11111111111111115ATP synthase delta (OSCP) subunit
11111111111111115Orotidine 5'-phosphate decarboxylase / HUMPS family
11111211121121118Indole-3-glycerol phosphate synthase
11211111111111116Aromatic amino acid lyase
11111111111111115Pyruvate kinase, barrel domain
999988888888888124Kinesin motor domain
242223272727292829292628282722396DnaJ domain
141513141415141315151615151414216Proteasome subunit
33854587866665585Major intrinsic protein
11111111111111115ATP synthase
11114Glycosyl hydrolase family 1
111111111111111153'5'-cyclic nucleotide phosphodiesterase
12111111111111116Profilin
11211122212212122Ribosomal protein L22p/L17e
22222222222223231Ribosomal protein L14p/L23e
101019141115131913222019191611231Ubiquitin family
45345544444434259Cofilin/tropomyosin-type actin-binding protein
2222222222222223014-3-3 protein
11344322232232236Alkaline phosphatase
11111111111111115Zinc carboxypeptidase
101031361818161714171717151513264Aldo/keto reductase family
1412833131169711881166163Myb-like DNA-binding domain
44334222222222137Forkhead domain
11111111111112Glycosyl hydrolases family 32 N-terminal domain
11211122212212122Ribosomal protein L16p/L10e
22222222222222129Ribosomal protein S14p/S29e
33354333333333348FKBP-type peptidyl-prolyl cis-trans isomerase
1111111111111114Glutathione peroxidase
111112119
66344433343333355Flavodoxin
11111111111111115Calreticulin family
55776565655656382Aminotransferase class-V
11222222222222228Ribonucleotide reductase, small chain
394049454541485048444951424947687DEAD/DEAH box helicase
7071777877757473737672757473671,105Helicase conserved C-terminal domain
11111111111111115EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22122222222222229Ribosomal protein L23
11111111111111115Pyridoxal-dependent decarboxylase, C-terminal sheet domain
22111111111111117Ribosomal protein L5
33554555556565572Pyridoxal-dependent decarboxylase conserved domain
22322233435433243Citrate synthase, C-terminal domain
56454555555555473GHMP kinases N terminal domain
55567666666666688Biotin carboxylase, N-terminal domain
1111111212121117Tryptophan synthase alpha chain
667967697878765104Pyridoxal-phosphate dependent enzyme
10101012119121212121313111311171NUDIX domain
33553444444444358pfkB family carbohydrate kinase
451111114Glycosyl hydrolases family 28
711110Luciferase-like monooxygenase
22222222222222230Ribosomal protein L3
11222222222222228Ribosomal protein L11, RNA binding domain
99141391011111111111111105156Histidine phosphatase superfamily (branch 1)
11111112122221120Thymidylate synthase
44444434564644464ATP synthase alpha/beta chain, C terminal domain
44434444444444459Calponin homology (CH) domain
44247422242242449Glutamine amidotransferases class-II
32322233123231234Ribosomal protein S15
22424325255453250'Cold-shock' DNA-binding domain
3368434344445459Thaumatin family
11111112111111116Fructose-1-6-bisphosphatase, N-terminal domain
11111111111111115Ribonucleotide reductase, all-alpha domain
22323222222222232Ribosomal protein S2
44444445444444360SRF-type transcription factor (DNA-binding and dimerisation domain)
101112910811111112111111127157GATA zinc finger
212324371718910821111418916256Amino acid permease
55754657656658383Prolyl oligopeptidase family
11211122212212122Ribosomal protein L30p/L7e
447710764574656486Histidine phosphatase superfamily (branch 2)
11111111111111115Respiratory-chain NADH dehydrogenase, 30 Kd subunit
44564444444444463Aconitase family (aconitate hydratase)
22311111111116Glycosyl hydrolases family 17
22222222222222230Ribosomal protein S5, N-terminal domain
22221222222222229Nucleoside diphosphate kinase
11Tetraspanin family
11211122212212223Ribosomal protein S10p/S20e
44352465645534161Arrestin (or S-antigen), N-terminal domain
11111111111111115Phosphoglucose isomerase
11111111111111115Carbohydrate phosphorylase
11111111111111115SecY translocase
11111111111111115Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222222222222230Ribosomal protein L6
33334333333333346Polyprenyl synthetase
23223222222222232Hexokinase
54433365536535464Dynamin family
11111111111111115Transcription factor TFIID (or TATA-binding protein, TBP)
22443532342242244Rieske [2Fe-2S] domain
4111111111114Phytochrome region
777688787989978115Biotin-requiring enzyme
11111121112121118Phosphofructokinase
22222223212222129Ribosomal protein S17
11111111211111116Hydroxymethylglutaryl-coenzyme A reductase
22433222222222234FGGY family of carbohydrate kinases, N-terminal domain
112Sodium:dicarboxylate symporter family
7791288888777777117Enoyl-CoA hydratase/isomerase
22222222222222129Ribosomal protein S9/S16
22232222222222231Transcription factor TFIIB repeat
6610777888999774112Cytidine and deoxycytidylate deaminase zinc-binding region
11111222222221123Molybdopterin oxidoreductase
524874677854106386Chromo (CHRromatin Organisation MOdifier) domain
1111211111111115Phosphatidylinositol-specific phospholipase C, Y domain
2211212211231122Phosphatidylinositol-specific phospholipase C, X domain
6713145674745456598D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
22222222222222230Malic enzyme, N-terminal domain
111111121122211196-phosphogluconate dehydrogenase, C-terminal domain
33554245445541155Multicopper oxidase
22Granulin
669116754585586899WW domain
11221222212212225Ribosomal RNA adenine dimethylase
9797106108121105100102103107104101109102951,557WD domain, G-beta repeat
44233222322222237Heavy-metal-associated domain
33233333333333344Adenylate kinase
11322222222223230Phosphoglucomutase/phosphomannomutase, C-terminal domain
11221122222222226Ribosomal protein S8
11111121312121120Ribosomal protein S11
54367556666656379LIM domain
22433445435537256Regulator of chromosome condensation (RCC1) repeat
23222222322222232Ribosomal protein S13/S18
11REV protein (anti-repression trans-activator protein)
22222222222222230chorismate binding enzyme
3333333333333334560s Acidic ribosomal protein
77354323243343457Prenyltransferase and squalene oxidase repeat
77677643474474481Protein kinase C terminal domain
22111111111111117Single-strand binding protein family
11112111111111116S-adenosylmethionine synthetase, N-terminal domain
999999999899897131Bromodomain
8811161211111110121111111013166Acyl-CoA dehydrogenase, C-terminal domain
151515171413151515161616151612225Ubiquitin carboxyl-terminal hydrolase
111111111111113Ribosomal protein L36
11321111111115Ribonuclease T2 family
761514871312141013149104156HSF-type DNA-binding
22122222222222229SRP54-type protein, GTPase domain
11112111111111116Urease alpha-subunit, N-terminal domain
5