PFAM Domains • Vuilleminia comedens VcCUCC2015_SSI6 v1.0
Annotations/GenomesGlotr1_1Helsul1Jaaar1Neole1Punst1Thega1Vuicom1TotalAnnotation Description
PFAMs
7,9067,9718,6367,8647,9087,15713,28360,725
117 transmembrane receptor (rhodopsin family)
50474945414249323ATPase family associated with various cellular activities (AAA)
35404440433472308ABC transporter
446454431ATP synthase alpha/beta family, nucleotide-binding domain
11125EGF-like domain
14141514141515101Elongation factor Tu GTP binding domain
1111121011111278Helix-loop-helix DNA-binding domain
14978871265Hsp20/alpha crystallin family
971179171676Hsp70 protein
8897781057KH domain
1111116SH2 domain
25262727282619178SH3 domain
1211111111111481Actin
29232923222320169Ankyrin repeat
11PAN domain
779788955ADP-ribosylation factor family
31314326441359247Eukaryotic aspartyl protease
333334322Cyclic nucleotide-binding domain
11Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
11111117Cytochrome c
711241367775Double-stranded RNA binding motif
181820211919115EF hand
11121174Fe-4S binding domain
1111116Fibronectin type III domain
3115Globin
1820111918632124Glutathione S-transferase, C-terminal domain
11211118Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
11Hemopexin
1010119861064Homeodomain
232222316lactate/malate dehydrogenase, NAD binding domain
666655539Myosin head (motor domain)
11913111312213883245951Cytochrome P450
1481753031802144054141,839Protein kinase domain
18151418151115106Pyridine nucleotide-disulphide oxidoreductase
26252528262730187Ras family
9917921112298Response regulator receiver domain
1449171112581RNase H
68666966646867468RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
33Retroviral aspartyl protease
1111228Copper/zinc superoxide dismutase (SODC)
233222317Iron/manganese superoxide dismutases, alpha-hairpin domain
33244253071Subtilase family
42363330301343227Sugar (and other) transporter
991189111168Thioredoxin
11Trypsin
555465535Tubulin/FtsZ family, GTPase domain
23621519von Willebrand factor type A domain
48498056665049398Zinc finger, C2H2 type
51586359575615359Zinc finger, C3HC4 type (RING finger)
30152614271011133Zinc knuckle
222222416Protein-tyrosine phosphatase
949998929851185717short chain dehydrogenase
58554858512360353Zinc-binding dehydrogenase
444555532Thiolase, N-terminal domain
13644671555Beta-ketoacyl synthase, N-terminal domain
3333321182Fe-2S iron-sulfur cluster binding domain
11211118Enolase, C-terminal TIM barrel domain
777778851Glutamine amidotransferase class-I
1110101010111577TCP-1/cpn60 chaperonin family
343334424Glutamine synthetase, catalytic domain
11111117Triosephosphate isomerase
1113141110111787E1-E2 ATPase
14152218141214109Core histone H2A/H2B/H3/H4
1113Copper binding proteins, plastocyanin/azurin family
89879101162Alpha amylase, catalytic domain
666655640Phorbol esters/diacylglycerol binding domain (C1 domain)
445373228Bacterial transferase hexapeptide (six repeats)
333333422tRNA synthetases class I (I, L, M and V)
1420111492018106Cyclin, N-terminal domain
1718111925731128Carboxylesterase family
444446430DNA polymerase family B
333333321ATP synthase subunit C
11211312039Peroxidase
589481246Beta-lactamase
444444731C-5 cytosine-specific DNA methylase
24273026251927178Calcineurin-like phosphoesterase
111324169525103Cellulase (glycosyl hydrolase family 5)
777667646tRNA synthetases class II (D, K and N)
37373837383341261Mitochondrial carrier protein
18161816161419117Aminotransferase class I and II
677856443Phosphoribosyl transferase domain
1313161313141496Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
222222214Ribosomal protein S4/S9 N-terminal domain
222222214Ribosomal protein S12/S23
11111117Chaperonin 10 Kd subunit
14161916181317113C2 domain
1718191721228122PH domain
6667651450bZIP transcription factor
13152014151420111Aldehyde dehydrogenase family
55777087557178493Fungal Zn(2)-Cys(6) binuclear cluster domain
28232125212023161Cytochrome b5-like Heme/Steroid binding domain
53354323Oxidoreductase molybdopterin binding domain
10810101113870Oxidoreductase NAD-binding domain
25242226232335178SNF2 family N-terminal domain
222222820Ribosomal protein S7p/S5e
22202222192122148Ubiquitin-conjugating enzyme
666655539Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
222223215Hsp90 protein
222222214Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
22Chitin recognition protein
233311114Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
442446327Cupin
3333444242-oxoacid dehydrogenases acyltransferase (catalytic domain)
442323321Catalase
11111117Disintegrin
121417UDP-glucoronosyl and UDP-glucosyl transferase
666765642Aminotransferase class-III
222222214Ribosomal protein S19
11111117DNA gyrase B
444333324Thiamine pyrophosphate enzyme, central domain
344443426Lyase
222221314Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11111117Adenylate and Guanylate cyclase catalytic domain
11111117ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
223231417Indole-3-glycerol phosphate synthase
1111111521Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
101091011111475Kinesin motor domain
30313532283130217DnaJ domain
1414141414141599Proteasome subunit
666745640Major intrinsic protein
11111117ATP synthase
543211218Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
11111117Profilin
122121211Ribosomal protein L22p/L17e
222222214Ribosomal protein L14p/L23e
14151816121419108Ubiquitin family
555555535Cofilin/tropomyosin-type actin-binding protein
1121121914-3-3 protein
221229Alkaline phosphatase
11111117Zinc carboxypeptidase
62584952542683384Aldo/keto reductase family
131514141222797Myb-like DNA-binding domain
5555551141Forkhead domain
11114Glycosyl hydrolases family 32 N-terminal domain
1111127Ribosomal protein L16p/L10e
222212213Ribosomal protein S14p/S29e
343333423FKBP-type peptidyl-prolyl cis-trans isomerase
11111117Glutathione peroxidase
22122110
776776545Flavodoxin
112Tropomyosin
11111117Calreticulin family
223339426Common central domain of tyrosinase
768657847Aminotransferase class-V
2232121830Ribonucleotide reductase, small chain
50455146504380365DEAD/DEAH box helicase
868192828778111617Helicase conserved C-terminal domain
22228Fructose-bisphosphate aldolase class-I
11111117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222214Ribosomal protein L23
11111117Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11111117Ribosomal protein L5
544444732Pyridoxal-dependent decarboxylase conserved domain
333333422Citrate synthase, C-terminal domain
555554534GHMP kinases N terminal domain
667665642Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
9999871162Pyridoxal-phosphate dependent enzyme
15181717141417112NUDIX domain
544444530pfkB family carbohydrate kinase
1097101311464Glycosyl hydrolases family 28
222222214Ribosomal protein L3
222212213Ribosomal protein L11, RNA binding domain
771061061157Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
444444428ATP synthase alpha/beta chain, C terminal domain
455544431Calponin homology (CH) domain
555545332Glutamine amidotransferases class-II
222321214Ribosomal protein S15
8103842944Thaumatin family
11111117Fructose-1-6-bisphosphatase, N-terminal domain
11112129Ribonucleotide reductase, all-alpha domain
222212213Ribosomal protein S2
333352423SRF-type transcription factor (DNA-binding and dimerisation domain)
1010101012101274GATA zinc finger
25232225221312142Amino acid permease
6675410745Prolyl oligopeptidase family
111122210Ribosomal protein L30p/L7e
121412101191381Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
444444428Aconitase family (aconitate hydratase)
34525524Glycosyl hydrolase family 10
11111117Glycosyl hydrolases family 17
222222214Ribosomal protein S5, N-terminal domain
222222214Nucleoside diphosphate kinase
112122615Tetraspanin family
221212212Ribosomal protein S10p/S20e
236493330Arrestin (or S-antigen), N-terminal domain
11211118Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
11111117SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222214Ribosomal protein L6
544543631Polyprenyl synthetase
222222315Hexokinase
6698861558Dynamin family
1131118Transcription factor TFIID (or TATA-binding protein, TBP)
555442328Rieske [2Fe-2S] domain
21115Phytochrome region
11Proton-conducting membrane transporter
889898858Biotin-requiring enzyme
11111117Phosphofructokinase
222222214Ribosomal protein S17
11111117Hydroxymethylglutaryl-coenzyme A reductase
343343323FGGY family of carbohydrate kinases, N-terminal domain
878768751Enoyl-CoA hydratase/isomerase
222222214Ribosomal protein S9/S16
212212212Transcription factor TFIIB repeat
688867851Cytidine and deoxycytidylate deaminase zinc-binding region
11111117Molybdopterin oxidoreductase
711911156867Chromo (CHRromatin Organisation MOdifier) domain
222221213Phosphatidylinositol-specific phospholipase C, Y domain
222222214Phosphatidylinositol-specific phospholipase C, X domain
666654538D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
222222214Malic enzyme, N-terminal domain
2222112126-phosphogluconate dehydrogenase, C-terminal domain
56351321852Multicopper oxidase
991411108869WW domain
322222215Ribosomal RNA adenine dimethylase
123125156121172135150982WD domain, G-beta repeat
333334322Heavy-metal-associated domain
333333321Adenylate kinase
111122210Phosphoglucomutase/phosphomannomutase, C-terminal domain
11111128Ribosomal protein S8
222222214Ribosomal protein S11
665665640LIM domain
334343525Regulator of chromosome condensation (RCC1) repeat
222212213Ribosomal protein S13/S18
222212112chorismate binding enzyme
33332332060s Acidic ribosomal protein
444445530Prenyltransferase and squalene oxidase repeat
677867546Protein kinase C terminal domain
11111117Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
10101110711968Bromodomain
108101078962Acyl-CoA dehydrogenase, C-terminal domain
14141714142415112Ubiquitin carboxyl-terminal hydrolase
1111116Ribosomal protein L36
333342422Ribonuclease T2 family
554545432HSF-type DNA-binding
222222214SRP54-type protein, GTPase domain
11111117Urease alpha-subunit, N-terminal domain
16151717221326126Serine carboxypeptidase
889887957Phosphatidylinositol 3- and 4-kinase
222222214Transketolase, thiamine diphosphate binding domain
112Glycosyl hydrolases family 11
1113WHEP-TRS domain
222223114Inositol monophosphatase family
444454429Glutaredoxin
444442224Isocitrate lyase family
11111117Serine hydroxymethyltransferase
455622327Iron-containing alcohol dehydrogenase
222222214Ribosomal protein L10
555555434KOW motif
11111117Ribosomal protein L34
11Ribosomal protein L33
222322417RF-1 domain
455531528Sodium:solute symporter family
1111116Imidazoleglycerol-phosphate dehydratase
21111129DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
11111117Glucose-6-phosphate dehydrogenase, NAD binding domain
66106138958Protein phosphatase 2C
333323320Nucleotidyl transferase
324266427Carbonic anhydrase
11111117Phosphoribulokinase / Uridine kinase family
13121112961073Fatty acid desaturase
666666642MutS domain V
11121118Delta-aminolevulinic acid dehydratase
564751533Arginase family
666667643MCM P-loop domain
121111310Squalene/phytoene synthase
99119871669FHA domain
33342537293346237AMP-binding enzyme
14141914142217114G-protein alpha subunit
14161714131427115HMG (high mobility group) box
651461661467His Kinase A (phospho-acceptor) domain
444443326Armadillo/beta-catenin-like repeat
29294128342715203Tetratricopeptide repeat
333425323Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
11VPR/VPX protein
131010101111974BRCA1 C Terminus (BRCT) domain
778789854Glycosyl transferases group 1
344444629Glycosyl transferase family 2
1111116SAM domain (Sterile alpha motif)
444432223linker histone H1 and H5 family
11111117Ribosomal protein L7/L12 C-terminal domain
325Pectate lyase
1112229ribonuclease
11111117Urease, gamma subunit
333323320CoA-ligase
1411613973090Phosphopantetheine attachment site
222222214Formyl transferase
11delta endotoxin
10910911121374Metallopeptidase family M24
2016221615161106Leucine Rich Repeat
33393227443016221alpha/beta hydrolase fold
333333321RNA polymerase Rpb2, domain 6
6556751145PB1 domain
222222214Staphylococcal nuclease homologue
91210911111274Rab-GTPase-TBC domain
11111117Tudor domain
332311114WH1 domain
5596731247Zinc finger, ZZ type
11111117HRDC domain
1089879657CBS domain
222222214Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
11111117Clp protease
545453531S1 RNA binding domain
11112118HIUase/Transthyretin family
444444428AhpC/TSA family
444444630tRNA synthetases class I (W and Y)
12112310UvrD/REP helicase N-terminal domain
443446934Rhodanese-like domain
222222214Universal stress protein family
34353630301729211Acetyltransferase (GNAT) family
11111117SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
222222214AIR synthase related protein, N-terminal domain
666666642tRNA synthetase class II core domain (G, H, P, S and T)
11136Phage integrase family
223222215Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
21212311Class II Aldolase and Adducin N-terminal domain
343333423Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
555554534Fes/CIP4, and EFC/F-BAR homology domain
334544225IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
444433224Phospholipase D Active site motif
111111814Regulator of G protein signaling domain
444744431GTPase-activator protein for Ras-like GTPase
9787951257RasGEF domain
9999116760RasGEF N-terminal motif
1312131211111486RhoGAP domain
1412121314121693RhoGEF domain
444444428SPRY domain
333333321RNA polymerase Rpb1, domain 2
11111117Guanylate kinase
444443427Gelsolin repeat
109118910663UBA/TS-N domain
16191720171817124PHD-finger
11111139GGL domain
557645436HECT-domain (ubiquitin-transferase)
11111319Helix-hairpin-helix motif
11211118MSP (Major sperm protein) domain
679678750Ribonuclease III domain
222222517Region in Clathrin and VPS
343423322RanBP1 domain
222222315PPIC-type PPIASE domain
333335121Zn-finger in Ran binding protein and others
23243224222014159Zinc finger C-x8-C-x5-C-x3-H type (and similar)
1111116B-box zinc finger
33102210939Poly(ADP-ribose) polymerase catalytic domain
122212515Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
901042121027116853800F-box domain
11113119Elongation factor 1 gamma, conserved domain
335531727Calpain family cysteine protease
223212214Copper fist DNA binding domain
566677744CRAL/TRIO domain
182354222232131302BTB/POZ domain
211141616Ricin-type beta-trefoil lectin domain
11111117Inhibitor of Apoptosis domain
333323320Voltage gated chloride channel
68199641769Caspase domain
68781241358GDSL-like Lipase/Acylhydrolase
11111117Poly-adenylate binding protein, unique domain
11111117POLO box duplicated region
16211820261345159ABC transporter transmembrane region
611017Integrase core domain
443454529FAD binding domain
21314112Condensation domain
11111218S-adenosyl-L-homocysteine hydrolase, NAD binding domain
12111118HAMP domain
222222214ribosomal L5P family C-terminus
555556839Insulinase (Peptidase family M16)
445444530Dehydrogenase E1 component
11111117Lumazine binding domain
666665641Elongation factor G C-terminus
444434629HMGL-like
444444428DnaJ central domain
233241520Starch binding domain
222223316Ribosomal protein L1p/L10e family
447444532Cation transporting ATPase, C-terminus
678665846Cation transporter/ATPase, N-terminus
11111117dUTPase
444444428Aconitase C-terminal domain
333333321Amino acid kinase family
21211119N-(5'phosphoribosyl)anthranilate (PRA) isomerase
9544691451Acyl transferase domain
11111117Urease beta subunit
222222214Dihydrodipicolinate synthetase family
29313228272216185haloacid dehalogenase-like hydrolase
22222212Glycosyl hydrolases family 2
910891071871Glycosyl hydrolases family 18
11211219Proliferating cell nuclear antigen, N-terminal domain
11Translation initiation factor IF-3, C-terminal domain
11111117Acylphosphatase
11111117Adenylosuccinate synthetase
11111117Asparaginase, N-terminal
323312418Peptidase S24-like
11111117Inorganic pyrophosphatase
5665551951Glycosyl hydrolases family 16
222242620Glycosyl hydrolases family 15
2017202113415110NADH:flavin oxidoreductase / NADH oxidase family
111111173-hydroxyacyl-CoA dehydrogenase, C-terminal domain
442461425Glycosyl hydrolase family 20, catalytic domain
666655640HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
2228192723242163GMC oxidoreductase
222222214Asparagine synthase
124213177Fungal cellulose binding domain
656666641Septin
11111218EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
422132418Flavin-binding monooxygenase-like
333335626tRNA synthetases class I (E and Q), catalytic domain
212111311tRNA synthetases class I (R)
855755540XPG N-terminal domain
141512131471792Metallo-beta-lactamase superfamily
11114F5/8 type C domain
446445431Choline/Carnitine o-acyltransferase
11111117Putative esterase
11111117Glycosyl hydrolase family 9
11211118Ferrochelatase
222222214Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
11111117Arginosuccinate synthase
1111116Electron transfer flavoprotein FAD-binding domain
11Ezrin/radixin/moesin family
333333321RNB domain
542251423Dioxygenase
3454414741CNH domain
222212213Diacylglycerol kinase catalytic domain
1413141211111186Dual specificity phosphatase, catalytic domain
11111117MyTH4 domain
335226324P21-Rho-binding domain
1415131612131598PX domain
433433222Ras association (RalGDS/AF-6) domain
344434426UBX domain
555555434VHS domain
11111117Phosphoinositide 3-kinase C2
222222315DAHP synthetase I family
574755740Carbon-nitrogen hydrolase
11316N-acetyltransferase
1111116Prephenate dehydratase
564545433Syntaxin
555545433Pumilio-family RNA binding repeat
6775761250Histone-like transcription factor (CBF/NF-Y) and archaeal histone
21111118Pterin binding enzyme
221121413ER lumen protein retaining receptor
222212213Glycoprotease family
11111117Histidinol dehydrogenase
333333321impB/mucB/samB family
1111116
11111117Ribosomal L15
11111139Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
11111117Ribosomal prokaryotic L21 protein
11111117Ribosomal L28 family
11111117Ribosomal L29 protein
11121118Ribosomal L39 protein
11111117Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
55414Glycosyl hydrolase family 7
222232720RNA pseudouridylate synthase
8777881055Histone deacetylase domain
333323118POT family
111121310PWWP domain
14161715151335125SET domain
546475536Isochorismatase family
222222214Permease family
11111117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
9810665650XPG I-region
115119Acetokinase family
12111118DNA photolyase
1111116Cation-independent mannose-6-phosphate receptor repeat
11111117Cytosol aminopeptidase family, catalytic domain
11114Sulfatase
111111176,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
333333321Acyl CoA binding protein
5554451139Cullin family
11111218Elongation factor TS
888693648FAD binding domain
16137229429100O-methyltransferase domain
763643534EamA-like transporter family
23223214
898887957ThiF family
11111117Ribosomal family S4e
1