PFAM Domains • Lentinula raphanica INPA1820 v1.0
Annotations/GenomesLenafn1Lenafn_TMI1502_1Lened_B_1_1Lenedo1Lenlat1Lennov1Lenra_T_1Lenrap1Lenrap1_155LraINPA1820_1TotalAnnotation Description
PFAMs
10,2109,6699,08310,2079,8989,65310,10910,41010,10410,31499,657
2211177 transmembrane receptor (Secretin family)
43414345414139384041412ATPase family associated with various cellular activities (AAA)
46425749444344444441454ABC transporter
443654544443ATP synthase alpha/beta family, nucleotide-binding domain
15161715151515171716158Elongation factor Tu GTP binding domain
14131013121312141212125Helix-loop-helix DNA-binding domain
987988999985Hsp20/alpha crystallin family
11917610119881099Hsp70 protein
778777778772KH domain
19171321171816171817173SH3 domain
14121414121211141312128Actin
581113101215142745160Ankyrin repeat
888888999984ADP-ribosylation factor family
33323529313028292829304Eukaryotic aspartyl protease
333333333330Cyclic nucleotide-binding domain
1111111119Cytochrome c
88499811981185Double-stranded RNA binding motif
112111211112EF hand
9889107665775Glutathione S-transferase, C-terminal domain
111111111110Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
139715119888896Homeodomain
222222212219lactate/malate dehydrogenase, NAD binding domain
677766566561Myosin head (motor domain)
1281291391281331291411431351411,346Cytochrome P450
2011991782032011891982112062021,988Protein kinase domain
13141413141414141414138Pyridine nucleotide-disulphide oxidoreductase
26262626252628272727264Ras family
11107991112111011101Response regulator receiver domain
2029115221520303317202RNase H
66615868656467686466647RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
11Reverse transcriptase (RNA-dependent DNA polymerase)
222222222220Iron/manganese superoxide dismutases, alpha-hairpin domain
1312911121113151414124Subtilase family
49485247494847474748482Sugar (and other) transporter
11111210111011101012108Thioredoxin
656554657554Tubulin/FtsZ family, GTPase domain
1111217von Willebrand factor type A domain
33261730302431312631279Zinc finger, C2H2 type
201611161813101288132Zinc finger, C3HC4 type (RING finger)
12911871415131620125Zinc knuckle
322222222221Protein-tyrosine phosphatase
96768590858189867982849short chain dehydrogenase
52484251535150504950496Zinc-binding dehydrogenase
556555555551Thiolase, N-terminal domain
675955486762Beta-ketoacyl synthase, N-terminal domain
1112111111112Fe-2S iron-sulfur cluster binding domain
111111111110Enolase, C-terminal TIM barrel domain
999888888984Glutamine amidotransferase class-I
11101910101110101210113TCP-1/cpn60 chaperonin family
333333333330Glutamine synthetase, catalytic domain
111111112111Triosephosphate isomerase
17151516151514181615156E1-E2 ATPase
16181617171918181818175Core histone H2A/H2B/H3/H4
12121112121213111111117Alpha amylase, catalytic domain
654655555551Phorbol esters/diacylglycerol binding domain (C1 domain)
545554655549Bacterial transferase hexapeptide (six repeats)
446446444444tRNA synthetases class I (I, L, M and V)
16171116161514141515149Cyclin, N-terminal domain
20192323201927292727234Carboxylesterase family
547564445549DNA polymerase family B
433332332329ATP synthase subunit C
11101011111010101010103Peroxidase
333333222226Beta-lactamase
444444444440C-5 cytosine-specific DNA methylase
23242125252523232223234Calcineurin-like phosphoesterase
22212021222120202020207Cellulase (glycosyl hydrolase family 5)
857765776664tRNA synthetases class II (D, K and N)
38373738373837373737373Mitochondrial carrier protein
111115recA bacterial DNA recombination protein
15151416161518181718162Aminotransferase class I and II
434444344337Phosphoribosyl transferase domain
15151615151515151616153Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
111111111110Phosphoglycerate kinase
222222222220Ribosomal protein S4/S9 N-terminal domain
222222222220Ribosomal protein S12/S23
111111111110Chaperonin 10 Kd subunit
16151215151516141516149C2 domain
10968910777780PH domain
16171415151615151616155bZIP transcription factor
19182321201819191819194Aldehyde dehydrogenase family
72476482775281756181692Fungal Zn(2)-Cys(6) binuclear cluster domain
24231926232324252626239Cytochrome b5-like Heme/Steroid binding domain
222322222221Oxidoreductase molybdopterin binding domain
885988988980Oxidoreductase NAD-binding domain
28272633282628252526272SNF2 family N-terminal domain
222222323222Ribosomal protein S7p/S5e
22222222222221242221220Ubiquitin-conjugating enzyme
668566666661Isocitrate/isopropylmalate dehydrogenase
221222222219Ribosomal Proteins L2, RNA binding domain
322232232425Hsp90 protein
222222222220Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111111111110Dihydrofolate reductase
332333333329Cysteine-rich secretory protein family
111111112111Ribosomal protein S3, C-terminal domain
11111221111Cupin
222332222222Annexin
3343334344342-oxoacid dehydrogenases acyltransferase (catalytic domain)
211111222215Catalase
1111111119Disintegrin
7687761010111183UDP-glucoronosyl and UDP-glucosyl transferase
555555555550Aminotransferase class-III
221222222219Ribosomal protein S19
111111111110DNA gyrase B
232333444331Thiamine pyrophosphate enzyme, central domain
445444544442Lyase
222222222220Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
111111111110Adenylate and Guanylate cyclase catalytic domain
111111111110ATP synthase delta (OSCP) subunit
111111111110Orotidine 5'-phosphate decarboxylase / HUMPS family
222222222220Indole-3-glycerol phosphate synthase
222222222220Aromatic amino acid lyase
111111111110Pyruvate kinase, barrel domain
13121212121210999110Kinesin motor domain
34322833323031313029310DnaJ domain
15151516151514141516150Proteasome subunit
221332444429Major intrinsic protein
111111111110ATP synthase
333233333329Glycosyl hydrolase family 1
1111111111103'5'-cyclic nucleotide phosphodiesterase
111111111110Profilin
222222222220Ribosomal protein L22p/L17e
222222222220Ribosomal protein L14p/L23e
17171317161717202118173Ubiquitin family
555555555550Cofilin/tropomyosin-type actin-binding protein
22222255533014-3-3 protein
44434343454347454547445Aldo/keto reductase family
109799910991091Myb-like DNA-binding domain
767657686765Forkhead domain
222222222220Ribosomal protein L16p/L10e
221222222219Ribosomal protein S14p/S29e
333333333330FKBP-type peptidyl-prolyl cis-trans isomerase
111111111110Glutathione peroxidase
11Dehydrin
553655768555Flavodoxin
111111211212Calreticulin family
444444222232Common central domain of tyrosinase
10111110101010101010102Aminotransferase class-V
324322463332Ribonucleotide reductase, small chain
61574863575565747280632DEAD/DEAH box helicase
9487819286869410098106924Helicase conserved C-terminal domain
1111111119Fructose-bisphosphate aldolase class-I
111111111211EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
221222222219Ribosomal protein L23
111111111110Pyridoxal-dependent decarboxylase, C-terminal sheet domain
111111152216Ribosomal protein L5
556755555654Pyridoxal-dependent decarboxylase conserved domain
447444444443Citrate synthase, C-terminal domain
554555555549GHMP kinases N terminal domain
665666667660Biotin carboxylase, N-terminal domain
111111111110Tryptophan synthase alpha chain
9912999888889Pyridoxal-phosphate dependent enzyme
1714916171615171515151NUDIX domain
655666666658pfkB family carbohydrate kinase
16131213151512111111129Glycosyl hydrolases family 28
222122222219Ribosomal protein L3
221222232220Ribosomal protein L11, RNA binding domain
11121212121111121212117Histidine phosphatase superfamily (branch 1)
211111111111Thymidylate synthase
111111111110Lipoxygenase
442554444440ATP synthase alpha/beta chain, C terminal domain
444444545543Calponin homology (CH) domain
333333333330Glutamine amidotransferases class-II
222222222220Ribosomal protein S15
434544333336Thaumatin family
111111111110Fructose-1-6-bisphosphatase, N-terminal domain
4123112115Ribonucleotide reductase, all-alpha domain
222222222220Ribosomal protein S2
333333333431SRF-type transcription factor (DNA-binding and dimerisation domain)
18161615131312111312139GATA zinc finger
8797777108878Amino acid permease
898888789982Prolyl oligopeptidase family
221222333323Ribosomal protein L30p/L7e
1091111101010101011102Histidine phosphatase superfamily (branch 2)
111111111110Respiratory-chain NADH dehydrogenase, 30 Kd subunit
746444444445Aconitase family (aconitate hydratase)
334333333331Glycosyl hydrolase family 10
443334443335Glycosyl hydrolases family 17
222222222220Ribosomal protein S5, N-terminal domain
22222222218Nucleoside diphosphate kinase
442444433335Tetraspanin family
222222122219Ribosomal protein S10p/S20e
121121343321Arrestin (or S-antigen), N-terminal domain
111111111110Phosphoglucose isomerase
111111111110Carbohydrate phosphorylase
112111111111SecY translocase
112111111111Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222222321Ribosomal protein L6
668766777767Polyprenyl synthetase
222222222220Hexokinase
1010101299999996Dynamin family
111111111110Transcription factor TFIID (or TATA-binding protein, TBP)
333333323329Rieske [2Fe-2S] domain
111112119Phytochrome region
8959898108882Biotin-requiring enzyme
111111111110Phosphofructokinase
22222221116Ribosomal protein S17
111211111111Hydroxymethylglutaryl-coenzyme A reductase
444444444440FGGY family of carbohydrate kinases, N-terminal domain
1198101010999994Enoyl-CoA hydratase/isomerase
222222222220Ribosomal protein S9/S16
322222322222Transcription factor TFIIB repeat
666666666660Cytidine and deoxycytidylate deaminase zinc-binding region
111111111110Molybdopterin oxidoreductase
87797987101082Chromo (CHRromatin Organisation MOdifier) domain
333333333330Phosphatidylinositol-specific phospholipase C, Y domain
775666777765Phosphatidylinositol-specific phospholipase C, X domain
887988888880D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
333333333330Malic enzyme, N-terminal domain
1111111111106-phosphogluconate dehydrogenase, C-terminal domain
14141314141415151515143Multicopper oxidase
889888887880WW domain
222222222220Ribosomal RNA adenine dimethylase
1431261211441231261431321381381,334WD domain, G-beta repeat
443544343337Heavy-metal-associated domain
432343333331Adenylate kinase
222222333324Phosphoglucomutase/phosphomannomutase, C-terminal domain
222222122219Ribosomal protein S8
433333222227Ribosomal protein S11
654665776658LIM domain
666666666660Regulator of chromosome condensation (RCC1) repeat
222322222221Ribosomal protein S13/S18
222222222220chorismate binding enzyme
43334433433460s Acidic ribosomal protein
334442233331Prenyltransferase and squalene oxidase repeat
554555666653Protein kinase C terminal domain
111111111110Single-strand binding protein family
111111111110S-adenosylmethionine synthetase, N-terminal domain
11111011111114151313120Bromodomain
777777788772Acyl-CoA dehydrogenase, C-terminal domain
14141516141415161415147Ubiquitin carboxyl-terminal hydrolase
111111118Ribosomal protein L36
222222222220Ribonuclease T2 family
444444444440HSF-type DNA-binding
232222222221SRP54-type protein, GTPase domain
111111111211Urease alpha-subunit, N-terminal domain
15111613121213111213128Serine carboxypeptidase
8811988888884Phosphatidylinositol 3- and 4-kinase
222222222220Transketolase, thiamine diphosphate binding domain
222222222220Glycosyl hydrolases family 11
11114WHEP-TRS domain
333333222226Inositol monophosphatase family
555554656652Glutaredoxin
222222222321Isocitrate lyase family
113111111112Serine hydroxymethyltransferase
222222222220Iron-containing alcohol dehydrogenase
222222223221Ribosomal protein L10
564556555652KOW motif
111111111110Ribosomal protein L34
111111111110Ribosomal protein L33
332333333329RF-1 domain
331333332327Sodium:solute symporter family
111111111110Imidazoleglycerol-phosphate dehydratase
111111111110DNA polymerase family A
111111112111IMP dehydrogenase / GMP reductase domain
111111111110Glucose-6-phosphate dehydrogenase, NAD binding domain
12111212111212131312120Protein phosphatase 2C
332333333329Nucleotidyl transferase
555545554548Carbonic anhydrase
111111111110Phosphoribulokinase / Uridine kinase family
13131213121311121312124Fatty acid desaturase
667666667662MutS domain V
111111111110Delta-aminolevulinic acid dehydratase
444444444440Arginase family
668666676764MCM P-loop domain
222222222321Squalene/phytoene synthase
1011913151213121313121FHA domain
41404140383838384040394AMP-binding enzyme
15141614141416151615149G-protein alpha subunit
25221424242423212223222HMG (high mobility group) box
664646675555His Kinase A (phospho-acceptor) domain
222222342425Armadillo/beta-catenin-like repeat
17151415191517201719168Tetratricopeptide repeat
333332373333Ion transport protein
122111111112DNA gyrase/topoisomerase IV, subunit A
99912881098890BRCA1 C Terminus (BRCT) domain
666766666661Glycosyl transferases group 1
333333333330Glycosyl transferase family 2
421222222221SAM domain (Sterile alpha motif)
543444444440linker histone H1 and H5 family
111111111110Ribosomal protein L7/L12 C-terminal domain
111111222214Pectate lyase
221222222219ribonuclease
111111111110Urease, gamma subunit
334333444435CoA-ligase
1213813111213131216123Phosphopantetheine attachment site
221222222219Formyl transferase
11111111111112111211112Metallopeptidase family M24
111111121212Leucine Rich Repeat
7946998910980alpha/beta hydrolase fold
334343445437RNA polymerase Rpb2, domain 6
555556565552PB1 domain
222222222220Staphylococcal nuclease homologue
12121112121212121212119Rab-GTPase-TBC domain
111111111110Tudor domain
112122222217WH1 domain
333333333330Zinc finger, ZZ type
111111111110HRDC domain
868866777568CBS domain
222222222220Ribosomal protein L13
322233232224Ribosomal protein L4/L1 family
111111121111Clp protease
433444456441S1 RNA binding domain
111111112111HIUase/Transthyretin family
555545657653AhpC/TSA family
445444444441tRNA synthetases class I (W and Y)
222222233323UvrD/REP helicase N-terminal domain
8988888891084Rhodanese-like domain
22222222218Universal stress protein family
24241921262524242223232Acetyltransferase (GNAT) family
111111111110SecE/Sec61-gamma subunits of protein translocation complex
111111111110C-terminal regulatory domain of Threonine dehydratase
221222222219AIR synthase related protein, N-terminal domain
545554586653tRNA synthetase class II core domain (G, H, P, S and T)
433444333334Tetrapyrrole (Corrin/Porphyrin) Methylases
221222222219Glycosyl transferase family, a/b domain
443444444439Class II Aldolase and Adducin N-terminal domain
444444444440Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
665666566658Fes/CIP4, and EFC/F-BAR homology domain
222222222220IQ calmodulin-binding motif
222322224223Phosphoinositide 3-kinase family, accessory domain (PIK domain)
231223222221Phospholipase D Active site motif
334333222227Regulator of G protein signaling domain
443444444439GTPase-activator protein for Ras-like GTPase
778977776772RasGEF domain
663676656657RasGEF N-terminal motif
11111111111113131412118RhoGAP domain
17161417161615151617159RhoGEF domain
443444333335SPRY domain
333333343331RNA polymerase Rpb1, domain 2
111111111110Guanylate kinase
433333444435Gelsolin repeat
455556455549UBA/TS-N domain
15161015141615151515146PHD-finger
222222222220GGL domain
755755565555HECT-domain (ubiquitin-transferase)
11111117Helix-hairpin-helix motif
111111111110MSP (Major sperm protein) domain
335333343333Ribonuclease III domain
443544754545Region in Clathrin and VPS
655656444449RanBP1 domain
112122221216PPIC-type PPIASE domain
232222233223Zn-finger in Ran binding protein and others
1210710121011111112106Zinc finger C-x8-C-x5-C-x3-H type (and similar)
111111111110B-box zinc finger
654665545551Poly(ADP-ribose) polymerase catalytic domain
222222222220Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
31211928241934333128268F-box domain
111111