PFAM Domains • Climacocystis borealis CliBor001 v1.0
Annotations/GenomesBjead1_1Cerun2Clibor1Hydfim1Panru1Phchr2Trace1TotalAnnotation Description
PFAMs
8,5588,0469,6379,4837,9178,2287,49459,363
50414138454739301ATPase family associated with various cellular activities (AAA)
46463944384936298ABC transporter
444444428ATP synthase alpha/beta family, nucleotide-binding domain
1113EGF-like domain
15141514141714103Elongation factor Tu GTP binding domain
121011139111278Helix-loop-helix DNA-binding domain
7878119454Hsp20/alpha crystallin family
812121088765Hsp70 protein
889788755KH domain
111115SH2 domain
26251816252225157SH3 domain
1010111010101071Actin
222845282522134Ankyrin repeat
786777749ADP-ribosylation factor family
55334841425931309Eukaryotic aspartyl protease
333333321Cyclic nucleotide-binding domain
11Cytochrome b/b6/petB
11111117Cytochrome c
765665641Double-stranded RNA binding motif
221931192318105EF hand
1111154Fe-4S binding domain
1111116Fibronectin type III domain
211127Globin
26161118172211121Glutathione S-transferase, C-terminal domain
11112118Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
11Hemopexin
11129899967Homeodomain
11Laminin EGF domain
222222214lactate/malate dehydrogenase, NAD binding domain
5412555440Myosin head (motor domain)
18918513612711915586997Cytochrome P450
2012092272072001531551,352Protein kinase domain
22141210162515114Pyridine nucleotide-disulphide oxidoreductase
24252829252826185Ras family
1110111111111277Response regulator receiver domain
128791691475RNase H
70696663657169473RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
22Reverse transcriptase (RNA-dependent DNA polymerase)
21111118Copper/zinc superoxide dismutase (SODC)
224223217Iron/manganese superoxide dismutases, alpha-hairpin domain
3516964447Subtilase family
30333436302724214Sugar (and other) transporter
121010121210975Thioredoxin
575555537Tubulin/FtsZ family, GTPase domain
101049336von Willebrand factor type A domain
63462922585254324Zinc finger, C2H2 type
73671111696159351Zinc finger, C3HC4 type (RING finger)
2516117271412112Zinc knuckle
222322215Protein-tyrosine phosphatase
69947774988372567short chain dehydrogenase
45394444555934320Zinc-binding dehydrogenase
455456433Thiolase, N-terminal domain
543322221Beta-ketoacyl synthase, N-terminal domain
3311333172Fe-2S iron-sulfur cluster binding domain
11211219Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
889878755Glutamine amidotransferase class-I
910131010101072TCP-1/cpn60 chaperonin family
643434630Glutamine synthetase, catalytic domain
11111117Triosephosphate isomerase
1216161910121398E1-E2 ATPase
15181614171616112Core histone H2A/H2B/H3/H4
212124214Copper binding proteins, plastocyanin/azurin family
997768955Alpha amylase, catalytic domain
465566537Phorbol esters/diacylglycerol binding domain (C1 domain)
453346530Bacterial transferase hexapeptide (six repeats)
334434324tRNA synthetases class I (I, L, M and V)
1412181410101189Cyclin, N-terminal domain
16171122141212104Carboxylesterase family
444344427DNA polymerase family B
344333323ATP synthase subunit C
21201711141710110Peroxidase
727443431Beta-lactamase
544555432C-5 cytosine-specific DNA methylase
26242324252625173Calcineurin-like phosphoesterase
1210181911141498Cellulase (glycosyl hydrolase family 5)
675776644tRNA synthetases class II (D, K and N)
37393839383836265Mitochondrial carrier protein
15141515141515103Aminotransferase class I and II
773476741Phosphoribosyl transferase domain
1414161414141399Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11111117Phosphoglycerate kinase
212222213Ribosomal protein S4/S9 N-terminal domain
222222214Ribosomal protein S12/S23
11111117Chaperonin 10 Kd subunit
15161418141526118C2 domain
202298212317120PH domain
6710867549bZIP transcription factor
19171417192118125Aldehyde dehydrogenase family
69656262768674494Fungal Zn(2)-Cys(6) binuclear cluster domain
26222522232424166Cytochrome b5-like Heme/Steroid binding domain
622434425Oxidoreductase molybdopterin binding domain
121091113161283Oxidoreductase NAD-binding domain
27212523232625170SNF2 family N-terminal domain
222222214Ribosomal protein S7p/S5e
21212522212221153Ubiquitin-conjugating enzyme
555555535Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
222223215Hsp90 protein
221222213Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
642332323Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
888789755Cupin
1326Chalcone and stilbene synthases, N-terminal domain
3333323202-oxoacid dehydrogenases acyltransferase (catalytic domain)
333455326Catalase
11111117Disintegrin
965355235UDP-glucoronosyl and UDP-glucosyl transferase
575555537Aminotransferase class-III
223222215Ribosomal protein S19
11111117DNA gyrase B
343333322Thiamine pyrophosphate enzyme, central domain
333333321Lyase
221212414Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11111117Adenylate and Guanylate cyclase catalytic domain
11111117ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
21111118Indole-3-glycerol phosphate synthase
213121111Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
10911119101171Kinesin motor domain
31343431313232225DnaJ domain
14151515161414103Proteasome subunit
1044649542Major intrinsic protein
31111119ATP synthase
253222218Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
11111117Profilin
222222214Ribosomal protein L22p/L17e
222222214Ribosomal protein L14p/L23e
17161519161916118Ubiquitin family
555656537Cofilin/tropomyosin-type actin-binding protein
22222221414-3-3 protein
3322212Alkaline phosphatase
11111117Zinc carboxypeptidase
64515042455637345Aldo/keto reductase family
12105713141576Myb-like DNA-binding domain
555555636Forkhead domain
11Glycosyl hydrolases family 32 N-terminal domain
11221119Ribosomal protein L16p/L10e
222222214Ribosomal protein S14p/S29e
355433427FKBP-type peptidyl-prolyl cis-trans isomerase
11111117Glutathione peroxidase
2222210
9756814655Flavodoxin
11111218Calreticulin family
63111416Common central domain of tyrosinase
767769648Aminotransferase class-V
134284224Ribonucleotide reductase, small chain
49546268784946406DEAD/DEAH box helicase
868782891078877616Helicase conserved C-terminal domain
11211118EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222214Ribosomal protein L23
11111117Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11111117Ribosomal protein L5
535335327Pyridoxal-dependent decarboxylase conserved domain
334433323Citrate synthase, C-terminal domain
555556536GHMP kinases N terminal domain
776656643Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
8888810858Pyridoxal-phosphate dependent enzyme
16161415171716111NUDIX domain
444544530pfkB family carbohydrate kinase
695755643Glycosyl hydrolases family 28
222222214Ribosomal protein L3
222222214Ribosomal protein L11, RNA binding domain
101010889863Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
444444428ATP synthase alpha/beta chain, C terminal domain
544535531Calponin homology (CH) domain
552255529Glutamine amidotransferases class-II
221222213Ribosomal protein S15
532246325Thaumatin family
11111117Fructose-1-6-bisphosphatase, N-terminal domain
111161112Ribonucleotide reductase, all-alpha domain
222222214Ribosomal protein S2
222222214SRF-type transcription factor (DNA-binding and dimerisation domain)
9898991062GATA zinc finger
262388212024130Amino acid permease
698666647Prolyl oligopeptidase family
122211110Ribosomal protein L30p/L7e
111391310101480Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
546544432Aconitase family (aconitate hydratase)
454556433Glycosyl hydrolase family 10
11111117Glycosyl hydrolases family 17
222222214Ribosomal protein S5, N-terminal domain
222242216Nucleoside diphosphate kinase
114311213Tetraspanin family
222222214Ribosomal protein S10p/S20e
4181168745Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
1111116SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222214Ribosomal protein L6
333334322Polyprenyl synthetase
222222214Hexokinase
8713977758Dynamin family
11111117Transcription factor TFIID (or TATA-binding protein, TBP)
443244425Rieske [2Fe-2S] domain
11114Phytochrome region
22Proton-conducting membrane transporter
789779754Biotin-requiring enzyme
11111218Phosphofructokinase
222222214Ribosomal protein S17
111141110Hydroxymethylglutaryl-coenzyme A reductase
334333423FGGY family of carbohydrate kinases, N-terminal domain
888899757Enoyl-CoA hydratase/isomerase
222222214Ribosomal protein S9/S16
242242218Transcription factor TFIIB repeat
657878748Cytidine and deoxycytidylate deaminase zinc-binding region
11111117Molybdopterin oxidoreductase
198661410871Chromo (CHRromatin Organisation MOdifier) domain
11111117Phosphatidylinositol-specific phospholipase C, Y domain
122211110Phosphatidylinositol-specific phospholipase C, X domain
667677746D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
322323318Malic enzyme, N-terminal domain
1221121106-phosphogluconate dehydrogenase, C-terminal domain
21411395246Multicopper oxidase
10106910111066WW domain
222223215Ribosomal RNA adenine dimethylase
2121241301341241401571,021WD domain, G-beta repeat
453555532Heavy-metal-associated domain
333333321Adenylate kinase
222222214Phosphoglucomutase/phosphomannomutase, C-terminal domain
212212212Ribosomal protein S8
222221213Ribosomal protein S11
665576641LIM domain
213Matrixin
447633431Regulator of chromosome condensation (RCC1) repeat
222222214Ribosomal protein S13/S18
222222214chorismate binding enzyme
33134332060s Acidic ribosomal protein
545445431Prenyltransferase and squalene oxidase repeat
766666744Protein kinase C terminal domain
11111117Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
111110101091071Bromodomain
8811879859Acyl-CoA dehydrogenase, C-terminal domain
14151515161514104Ubiquitin carboxyl-terminal hydrolase
111115Ribosomal protein L36
233332319Ribonuclease T2 family
455554432HSF-type DNA-binding
222222214SRP54-type protein, GTPase domain
11111117Urease alpha-subunit, N-terminal domain
33141723162218143Serine carboxypeptidase
889888857Phosphatidylinositol 3- and 4-kinase
222232215Transketolase, thiamine diphosphate binding domain
1124Glycosyl hydrolases family 11
11WHEP-TRS domain
422232217Inositol monophosphatase family
344445428Glutaredoxin
1132234429Isocitrate lyase family
11111117Serine hydroxymethyltransferase
453364328Iron-containing alcohol dehydrogenase
123221213Ribosomal protein L10
554353530KOW motif
11111117Ribosomal protein L34
112Ribosomal protein L33
335433425RF-1 domain
322223216Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
11111117Glucose-6-phosphate dehydrogenase, NAD binding domain
866879852Protein phosphatase 2C
243333321Nucleotidyl transferase
534234324Carbonic anhydrase
11111117Phosphoribulokinase / Uridine kinase family
151620111471194Fatty acid desaturase
666666642MutS domain V
11111117Delta-aminolevulinic acid dehydratase
544457433Arginase family
866666644MCM P-loop domain
11221119Squalene/phytoene synthase
201491211151192FHA domain
42323734264533249AMP-binding enzyme
1614131315131498G-protein alpha subunit
15141712151718108HMG (high mobility group) box
867777850His Kinase A (phospho-acceptor) domain
333333321Armadillo/beta-catenin-like repeat
27311519302832182Tetratricopeptide repeat
233333219Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
10114510101161BRCA1 C Terminus (BRCT) domain
664566639Glycosyl transferases group 1
452346428Glycosyl transferase family 2
1113SAM domain (Sterile alpha motif)
332232318linker histone H1 and H5 family
11111117Ribosomal protein L7/L12 C-terminal domain
11114Pectate lyase
61112112ribonuclease
11111117Urease, gamma subunit
332333320CoA-ligase
65810410649Phosphopantetheine attachment site
222222214Formyl transferase
109111110111072Metallopeptidase family M24
11Vpu protein
15153419151586Leucine Rich Repeat
504389355834237alpha/beta hydrolase fold
333333321RNA polymerase Rpb2, domain 6
655556537PB1 domain
222322215Staphylococcal nuclease homologue
111012121011975Rab-GTPase-TBC domain
311211110Tudor domain
222222113WH1 domain
533335325Zinc finger, ZZ type
11111117HRDC domain
997799959CBS domain
222222214Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
11111117Clp protease
335453427S1 RNA binding domain
11111117HIUase/Transthyretin family
655576640AhpC/TSA family
444444529tRNA synthetases class I (W and Y)
112511112UvrD/REP helicase N-terminal domain
3410956542Rhodanese-like domain
222222214Universal stress protein family
37301819334332212Acetyltransferase (GNAT) family
11111117SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
222222214AIR synthase related protein, N-terminal domain
666566641tRNA synthetase class II core domain (G, H, P, S and T)
242222216Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
1113Class II Aldolase and Adducin N-terminal domain
433433323Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
543544530Fes/CIP4, and EFC/F-BAR homology domain
352245324IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
433134422Phospholipase D Active site motif
115311113Regulator of G protein signaling domain
444444428GTPase-activator protein for Ras-like GTPase
589875648RasGEF domain
698796752RasGEF N-terminal motif
1312121113131286RhoGAP domain
1313141313141393RhoGEF domain
544445430SPRY domain
343343323RNA polymerase Rpb1, domain 2
11111117Guanylate kinase
443444427Gelsolin repeat
8855109954UBA/TS-N domain
15171315161720113PHD-finger
212222213GGL domain
454444429HECT-domain (ubiquitin-transferase)
12123110Helix-hairpin-helix motif
11111117MSP (Major sperm protein) domain
1095498853Ribonuclease III domain
224422218Region in Clathrin and VPS
344343324RanBP1 domain
221132213PPIC-type PPIASE domain
11Phosphotyrosine interaction domain (PTB/PID)
23241315Zn-finger in Ran binding protein and others
28231610272725156Zinc finger C-x8-C-x5-C-x3-H type (and similar)
11111117B-box zinc finger
995559547Poly(ADP-ribose) polymerase catalytic domain
222122213Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
1841312832132141114762F-box domain
11111117Elongation factor 1 gamma, conserved domain
1111116Calpain family cysteine protease
232223216Copper fist DNA binding domain
778877751CRAL/TRIO domain
52316744272719267BTB/POZ domain
674118Ricin-type beta-trefoil lectin domain
11111117Inhibitor of Apoptosis domain
333333422Voltage gated chloride channel
21111415791895Caspase domain
1517841111874GDSL-like Lipase/Acylhydrolase
12211119Poly-adenylate binding protein, unique domain
11111117POLO box duplicated region
20241720162416137ABC transporter transmembrane region
77Integrase core domain
565578440FAD binding domain
3223414Condensation domain
11112118S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11211118HAMP domain
222222214ribosomal L5P family C-terminus
867667646Insulinase (Peptidase family M16)
444444428Dehydrogenase E1 component
11111117Lumazine binding domain
666667643Elongation factor G C-terminus
444444428HMGL-like
444445429DnaJ central domain
242132115Starch binding domain
223322216Ribosomal protein L1p/L10e family
554844636Cation transporting ATPase, C-terminus
685955745Cation transporter/ATPase, N-terminus
11111117dUTPase
445544430Aconitase C-terminal domain
333333321Amino acid kinase family
21111118N-(5'phosphoribosyl)anthranilate (PRA) isomerase
343322219Acyl transferase domain
11111117Urease beta subunit
343334323Dihydrodipicolinate synthetase family
28281115292833172haloacid dehalogenase-like hydrolase
11112129Glycosyl hydrolases family 2
151091110101176Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
1113Translation initiation factor IF-3, C-terminal domain
11111117Acylphosphatase
11111117Adenylosuccinate synthetase
11111117Asparaginase, N-terminal
333333321Peptidase S24-like
11111117Inorganic pyrophosphatase
54101045745Glycosyl hydrolases family 16
233322217Glycosyl hydrolases family 15
816981461172NADH:flavin oxidoreductase / NADH oxidase family
111111173-hydroxyacyl-CoA dehydrogenase, C-terminal domain
444544429Glycosyl hydrolase family 20, catalytic domain
555555535HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
37243029243521200GMC oxidoreductase
222222214Asparagine synthase
32202225273329188Fungal cellulose binding domain
569655541Septin
1111116EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
546735434Flavin-binding monooxygenase-like
334333322tRNA synthetases class I (E and Q), catalytic domain
11211118tRNA synthetases class I (R)
756456538XPG N-terminal domain
131161011161279Metallo-beta-lactamase superfamily
1113F5/8 type C domain
444465431Choline/Carnitine o-acyltransferase
11111117Putative esterase
11Furin-like cysteine rich region
11111117Glycosyl hydrolase family 9
11111117Ferrochelatase
222222214Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
11111117Arginosuccinate synthase
1111217Electron transfer flavoprotein FAD-binding domain
333533323RNB domain
233325321Dioxygenase
344534326CNH domain
222222214Diacylglycerol kinase catalytic domain
1412141111111285Dual specificity phosphatase, catalytic domain
1111116MyTH4 domain
454534429P21-Rho-binding domain
16131514151615104PX domain
335333323Ras association (RalGDS/AF-6) domain
444434427UBX domain
556555536VHS domain
11111117Phosphoinositide 3-kinase C2
222222214DAHP synthetase I family
554444430Carbon-nitrogen hydrolase
1124N-acetyltransferase
11111117Prephenate dehydratase
454455431Syntaxin
11Pentapeptide repeats (8 copies)
555455534Pumilio-family RNA binding repeat
666767745Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
11111117ER lumen protein retaining receptor
222222214Glycoprotease family
11111117Histidinol dehydrogenase
333333321impB/mucB/samB family
112116
11111117Ribosomal L15
113311111Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
11111117Ribosomal prokaryotic L21 protein
11111117Ribosomal L28 family
11111117Ribosomal L29 protein
11111117Ribosomal L39 protein
11111117Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
545348332Glycosyl hydrolase family 7
224332218RNA pseudouridylate synthase
1066769650Histone deacetylase domain
223121112POT family
222221213PWWP domain
15172419201513123SET domain
575459540Isochorismatase family
222222214Permease family
11111117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
796657747XPG I-region
11111117Acetokinase family
11111117DNA photolyase
1111116Cation-independent mannose-6-phosphate receptor repeat
11111117Cytosol aminopeptidase family, catalytic domain
11114Sulfatase
111111176,7-dimethyl-8-ribityllumazine synthase
11111117Ribosomal protein S16
232333319Acyl CoA binding protein
555556536Cullin family
11111117Elongation factor TS
333335323FAD binding domain
1342157116