PFAM Domains • Thamnidium elegans v1.0
Annotations/GenomesBacci1Hesve2finisherSCLichy1Morel2Mucci2Parpar1Phybl2Rhimi1_1Synrac1Thaele1Umbra1TotalAnnotation Description
PFAMs
13,4788,61310,46610,1609,58411,3919,2168,62610,79811,9138,515112,760
1237 transmembrane receptor (Secretin family)
52154333353377 transmembrane sweet-taste receptor of 3 GCPR
5344454744424838464340490ATPase family associated with various cellular activities (AAA)
6742609452464834374635561ABC transporter
1285699127810793ATP synthase alpha/beta family, nucleotide-binding domain
13127EGF-like domain
2519191917192118212018216Elongation factor Tu GTP binding domain
7531512637443539334431446Helix-loop-helix DNA-binding domain
42573734237Hsp20/alpha crystallin family
191014141120121014279160Hsp70 protein
1915151314111213121113148KH domain
11111117SH2 domain
8947653941353748343845518SH3 domain
1610121111141111111210129Actin
7146515942937456864438Ankyrin repeat
1591121121010910129128ADP-ribosylation factor family
3528273827213320232423299Eukaryotic aspartyl protease
7695767777674Cyclic nucleotide-binding domain
11Cystatin domain
112Cytochrome b(C-terminal)/b6/petD
1135Cytochrome b/b6/petB
2133111221118Cytochrome c
1233111122219Double-stranded RNA binding motif
5434444343135331234324EF hand
1121111194Fe-4S binding domain
212111111112Fibronectin type III domain
4222221116Globin
201412141387115715126Glutathione S-transferase, C-terminal domain
6222333344133Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
5525371227232829202318297Homeodomain
55Kazal-type serine protease inhibitor domain
8465555355354lactate/malate dehydrogenase, NAD binding domain
22Lectin C-type domain
21131571717161612168158Myosin head (motor domain)
8536643041345435504849526Cytochrome P450
3582042772022372342202102132501652,570Protein kinase domain
2313191118171615141616178Pyridine nucleotide-disulphide oxidoreductase
8240594160605451517239609Ras family
3016332015181817191820224Response regulator receiver domain
12524115RNase H
13782109888891979683104951,070RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
113139Reverse transcriptase (RNA-dependent DNA polymerase)
5335332333235Copper/zinc superoxide dismutase (SODC)
1112211111113Iron/manganese superoxide dismutases, alpha-hairpin domain
3115192216162415171911205Subtilase family
6628461447342822443747413Sugar (and other) transporter
1812141915151316181413167Thioredoxin
11Thyroglobulin type-1 repeat
1214Trefoil (P-type) domain
5355422322639Trypsin
137136889848690Tubulin/FtsZ family, GTPase domain
33von Willebrand factor type A domain
17410512710514029203873738691,114Zinc finger, C2H2 type
96617069644556071162559Zinc finger, C3HC4 type (RING finger)
181521184517702381319267Zinc knuckle
7533665557355Protein-tyrosine phosphatase
4939455245343327393071464short chain dehydrogenase
4619283029192323312334305Zinc-binding dehydrogenase
96661085587676Thiolase, N-terminal domain
3222332222225Beta-ketoacyl synthase, N-terminal domain
5347444112352Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
3232222222123Enolase, C-terminal TIM barrel domain
213Cytochrome C and Quinol oxidase polypeptide I
1113Cytochrome C oxidase subunit II, periplasmic domain
1381110991099118107Glutamine amidotransferase class-I
1511131211111511111311134TCP-1/cpn60 chaperonin family
11ATP synthase A chain
9575556546461Glutamine synthetase, catalytic domain
2112111111113Triosephosphate isomerase
4932263530402626304325362E1-E2 ATPase
211524141414201414149173Core histone H2A/H2B/H3/H4
213Copper binding proteins, plastocyanin/azurin family
2233111121623Alpha amylase, catalytic domain
1713148411711121110118Phorbol esters/diacylglycerol binding domain (C1 domain)
89868758781084Bacterial transferase hexapeptide (six repeats)
6445474466454tRNA synthetases class I (I, L, M and V)
1817211518191820131716192Cyclin, N-terminal domain
2130321122650Carboxylesterase family
5545554456553DNA polymerase family B
8336544433447ATP synthase subunit C
111111118Legume lectin domain
4321442333231Peroxidase
114Fe-4S iron sulfur cluster binding proteins, NifH/frxC family
123181111432Beta-lactamase
1233214121222C-5 cytosine-specific DNA methylase
1113NADH dehydrogenase
4935393537363433373629400Calcineurin-like phosphoesterase
5656344455855Cellulase (glycosyl hydrolase family 5)
8666666666668tRNA synthetases class II (D, K and N)
8052666263615452536445652Mitochondrial carrier protein
2718211720202018202015216Aminotransferase class I and II
14101381371110579107Phosphoribosyl transferase domain
1513151415151416131511156Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1121211121114Phosphoglycerate kinase
3344333333335Ribosomal protein S4/S9 N-terminal domain
4343444434340Ribosomal protein S12/S23
22Bacterial regulatory helix-turn-helix proteins, AraC family
1111222111114Chaperonin 10 Kd subunit
3618323123192220171819255C2 domain
8551793244354853363545543PH domain
4817321528311926273613292bZIP transcription factor
2016251615151212181613178Aldehyde dehydrogenase family
9258804046574752564660634Fungal Zn(2)-Cys(6) binuclear cluster domain
6033422841343937293130404Cytochrome b5-like Heme/Steroid binding domain
2234221121222Oxidoreductase molybdopterin binding domain
1914171316141313141414161Oxidoreductase NAD-binding domain
2624242220242022232221248SNF2 family N-terminal domain
4352443334338Ribosomal protein S7p/S5e
2620232522222022182320241Ubiquitin-conjugating enzyme
116107878779686Isocitrate/isopropylmalate dehydrogenase
6343544445446Ribosomal Proteins L2, RNA binding domain
5353444454344Hsp90 protein
4323326223232Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
2221222212220Dihydrofolate reductase
11Chitin recognition protein
418116312310352Cysteine-rich secretory protein family
5341554334239Ribosomal protein S3, C-terminal domain
22Annexin
22Eukaryotic-type carbonic anhydrase
64556544364522-oxoacid dehydrogenases acyltransferase (catalytic domain)
7233442335339Catalase
6224332223332Disintegrin
203510917212574UDP-glucoronosyl and UDP-glucosyl transferase
8654666565562Aminotransferase class-III
7343444344343Ribosomal protein S19
1111111111111DNA gyrase B
73216533310346Thiamine pyrophosphate enzyme, central domain
4545444364447Lyase
5334333333336Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1123222222423Ferritin-like domain
4232222222124Adenylate and Guanylate cyclase catalytic domain
2122111111114ATP synthase delta (OSCP) subunit
1111111111111Orotidine 5'-phosphate decarboxylase / HUMPS family
2111111111112Indole-3-glycerol phosphate synthase
4343333334235Pyruvate kinase, barrel domain
3625291528292028222618276Kinesin motor domain
4534353339423437324030401DnaJ domain
1714141414141414141413156Proteasome subunit
1227222123428Major intrinsic protein
211222211216ATP synthase
22Glycosyl hydrolase family 1
125838766573703'5'-cyclic nucleotide phosphodiesterase
1112111211113Profilin
5343445434241Ribosomal protein L22p/L17e
4343333333335Ribosomal protein L14p/L23e
3116233122172321172120242Ubiquitin family
7687674667670Cofilin/tropomyosin-type actin-binding protein
636433343434214-3-3 protein
5354433334239Alkaline phosphatase
527Zinc carboxypeptidase
4216291726182018251528254Aldo/keto reductase family
3931373823192033182125304Myb-like DNA-binding domain
141010710101067107101Forkhead domain
11125Glycosyl hydrolases family 32 N-terminal domain
1111141134119Ribosomal protein L16p/L10e
5342434333337Ribosomal protein S14p/S29e
9779646576773FKBP-type peptidyl-prolyl cis-trans isomerase
2122122212118Glutathione peroxidase
5443534331
2117176159131110914142Flavodoxin
11Tropomyosin
1115112111116Calreticulin family
95611785577777Aminotransferase class-V
3122331112120Ribonucleotide reductase, small chain
5247515648524747555545555DEAD/DEAH box helicase
9980889181847477828275913Helicase conserved C-terminal domain
2111111111112EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
5343443334339Ribosomal protein L23
3134111121119Pyridoxal-dependent decarboxylase, C-terminal sheet domain
5343335434340Ribosomal protein L5
6445445344649Pyridoxal-dependent decarboxylase conserved domain
2122122123119Citrate synthase, C-terminal domain
7666666666667GHMP kinases N terminal domain
1281181191189108105Biotin carboxylase, N-terminal domain
1111111111111Tryptophan synthase alpha chain
12999109999911105Pyridoxal-phosphate dependent enzyme
11'Paired box' domain
2618181723201620182215213NUDIX domain
10664766656668pfkB family carbohydrate kinase
55129785345Glycosyl hydrolases family 28
5322443334235Ribosomal protein L3
6443445444446Ribosomal protein L11, RNA binding domain
138118111111108910110Histidine phosphatase superfamily (branch 1)
1111111111111Thymidylate synthase
1188699127810795ATP synthase alpha/beta chain, C terminal domain
13101613121091213138129Calponin homology (CH) domain
11Bacterial dnaA protein
1079101256645579Glutamine amidotransferases class-II
3242322333330Ribosomal protein S15
2134222122223'Cold-shock' DNA-binding domain
768455445452Thaumatin family
1111111111111Fructose-1-6-bisphosphatase, N-terminal domain
5233442324234Ribonucleotide reductase, all-alpha domain
7333444335342Ribosomal protein S2
1471341097969694SRF-type transcription factor (DNA-binding and dimerisation domain)
6530432436383539334322408GATA zinc finger
35241937211019188925225Amino acid permease
97510676666876Prolyl oligopeptidase family
6362555436146Ribosomal protein L30p/L7e
63511532433550Histidine phosphatase superfamily (branch 2)
2121111111113Respiratory-chain NADH dehydrogenase, 30 Kd subunit
6466665545659Aconitase family (aconitate hydratase)
11Glycosyl hydrolase family 10
4245331353538Glycosyl hydrolases family 17
5353435333340Ribosomal protein S5, N-terminal domain
6542664556352Nucleoside diphosphate kinase
7464665354454Tetraspanin family
3332333333231Ribosomal protein S10p/S20e
4617251222332220253220274Arrestin (or S-antigen), N-terminal domain
1131111121114Phosphoglucose isomerase
3212222115Carbohydrate phosphorylase
4121222222121SecY translocase
1111111111111Respiratory-chain NADH dehydrogenase, 49 Kd subunit
4344334333337Ribosomal protein L6
6553554555351Polyprenyl synthetase
17812611107811118109Hexokinase
968117108789689Dynamin family
1112111111112Biopterin-dependent aromatic amino acid hydroxylase
3121222112118Transcription factor TFIID (or TATA-binding protein, TBP)
5557545444452Rieske [2Fe-2S] domain
1247Proton-conducting membrane transporter
1511131012131010111410129Biotin-requiring enzyme
4221222222223Phosphofructokinase
3223222222224Ribosomal protein S17
2231331223123Hydroxymethylglutaryl-coenzyme A reductase
9453666655560FGGY family of carbohydrate kinases, N-terminal domain
313122111217Sodium:dicarboxylate symporter family
1712141014111112101512138Enoyl-CoA hydratase/isomerase
5333444434340Ribosomal protein S9/S16
112PTS HPr component phosphorylation site
3225333223331Transcription factor TFIIB repeat
1051069846610781Cytidine and deoxycytidylate deaminase zinc-binding region
2113112111115Molybdopterin oxidoreductase
23151516918221811196172Chromo (CHRromatin Organisation MOdifier) domain
11Phosphatidylinositol-specific phospholipase C, Y domain
1113Phosphatidylinositol-specific phospholipase C, X domain
6565555545556D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
7462554555351Malic enzyme, N-terminal domain
213PEP-utilising enzyme, mobile domain
31213222221216-phosphogluconate dehydrogenase, C-terminal domain
7786555377565Multicopper oxidase
26141616812713151912158WW domain
3233333333332Ribosomal RNA adenine dimethylase
2041571713541581641621571621711452,005WD domain, G-beta repeat
11ATP synthase, Delta/Epsilon chain, long alpha-helix domain
112Calponin family repeat
5447544356451Heavy-metal-associated domain
8454665545456Adenylate kinase
2232222243226Phosphoglucomutase/phosphomannomutase, C-terminal domain
5343333333235Ribosomal protein S8
4333423323333Ribosomal protein S11
191412913161415161612156LIM domain
3433154457443Regulator of chromosome condensation (RCC1) repeat
4543442434340Ribosomal protein S13/S18
211111111111Tau and MAP protein, tubulin-binding repeat
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
4222222222224chorismate binding enzyme
1599688776858860s Acidic ribosomal protein
22CUB domain
4444444433442Prenyltransferase and squalene oxidase repeat
1711149910111081010119Protein kinase C terminal domain
112Spectrin repeat
1112111111112Single-strand binding protein family
2111111111112S-adenosylmethionine synthetase, N-terminal domain
2314171620181418161912187Bromodomain
2116201815161617171612184Acyl-CoA dehydrogenase, C-terminal domain
2719232526202122202819250Ubiquitin carboxyl-terminal hydrolase
111111111110Ribosomal protein L36
2323114321325Ribonuclease T2 family
291224720191414191912189HSF-type DNA-binding
2222232223224SRP54-type protein, GTPase domain
3211222112118Urease alpha-subunit, N-terminal domain
71294567466369Serine carboxypeptidase
15121011131210129139126Phosphatidylinositol 3- and 4-kinase
6232222243230Transketolase, thiamine diphosphate binding domain
1211111210WHEP-TRS domain
2222222222222Inositol monophosphatase family
85861085656673Glutaredoxin
4221221222222Isocitrate lyase family
2222222222222Serine hydroxymethyltransferase
2111111111112Iron-containing alcohol dehydrogenase
3412442334131Ribosomal protein L10
147591098668789KOW motif
1111111111111Ribosomal protein L34
1111116Ribosomal protein L33
3333332333231RF-1 domain
11121111110Sodium:solute symporter family
2111111111112Imidazoleglycerol-phosphate dehydratase
1111111111111DNA polymerase family A
3111221112116IMP dehydrogenase / GMP reductase domain
5343333232233Glucose-6-phosphate dehydrogenase, NAD binding domain
1781111101011118106113Protein phosphatase 2C
7573664657561Nucleotidyl transferase
3223212112120Carbonic anhydrase
3222221222222Phosphoribulokinase / Uridine kinase family
13671186167511696Fatty acid desaturase
6676766666668MutS domain V
1111211111112Delta-aminolevulinic acid dehydratase
3352223252332Arginase family
6668666676669MCM P-loop domain
3331344335234Squalene/phytoene synthase
2919251717201815191714210FHA domain
112NADH-ubiquinone/plastoquinone oxidoreductase chain 6
5727473537343630423925409AMP-binding enzyme
1713148121210811119125G-protein alpha subunit
3113331321232319242216238HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
1113Cytochrome c oxidase subunit III
1571813798810812115His Kinase A (phospho-acceptor) domain
198871091088107104Armadillo/beta-catenin-like repeat
5743443936243137172536389Tetratricopeptide repeat
185914867459893Ion transport protein
1111111111111DNA gyrase/topoisomerase IV, subunit A
131111101066129512105BRCA1 C Terminus (BRCT) domain
99105978787786Glycosyl transferases group 1
8456425322647Glycosyl transferase family 2
9341243724342SAM domain (Sterile alpha motif)
213312121319linker histone H1 and H5 family
112111111111Ribosomal protein L7/L12 C-terminal domain
11ribonuclease
3211222112118Urease, gamma subunit
7367443353348CoA-ligase
9585868497675Phosphopantetheine attachment site
2222222222222Formyl transferase
11Cellulose binding domain
1614131315151415121512154Metallopeptidase family M24
452735623313332791226322Leucine Rich Repeat
3323303925823166732242alpha/beta hydrolase fold
4345333333337RNA polymerase Rpb2, domain 6
17121711891081288120PB1 domain
2222222232223Staphylococcal nuclease homologue
4525321627312922262920302Rab-GTPase-TBC domain
1111111111111Tudor domain
3322231132224WH1 domain
9567565556766Zinc finger, ZZ type
2311211112217HRDC domain
2416171518171815141714185CBS domain
6243335435240Ribosomal protein L13
5342444323236Ribosomal protein L4/L1 family
1111111111111Clp protease
4357343434545S1 RNA binding domain
1112111111112HIUase/Transthyretin family
8665565556764AhpC/TSA family
4444444444444tRNA synthetases class I (W and Y)
11121111211UvrD/REP helicase N-terminal domain
9511881287141310105Rhodanese-like domain
171093121412991310118Universal stress protein family
4936334643262728262639379Acetyltransferase (GNAT) family
1111112111112SecE/Sec61-gamma subunits of protein translocation complex
1111111111111C-terminal regulatory domain of Threonine dehydratase
2222222