PFAM Domains • Phaeomoniellales sp. NC0930 v1.0
Annotations/GenomesCapse1ClaNC0930_1Cocba1EndpusZ1Exode1Fonmo1Phach1Phiatt1TotalAnnotation Description
PFAMs
12,01813,3546,9358,8899,56212,1616,46510,99580,379
21121187 transmembrane receptor (Secretin family)
4356434540464148362ATPase family associated with various cellular activities (AAA)
4271353836413544342ABC transporter
5444444433ATP synthase alpha/beta family, nucleotide-binding domain
1515141415151416118Elongation factor Tu GTP binding domain
111310912148885Helix-loop-helix DNA-binding domain
8512782437Hsp20/alpha crystallin family
1213711101171081Hsp70 protein
7787779759KH domain
112SH2 domain
1713221315152014129SH3 domain
10101011101010980Actin
28494056522359244Ankyrin repeat
5111412PAN domain
7776775652ADP-ribosylation factor family
182310910151217114Eukaryotic aspartyl protease
5444444433Cyclic nucleotide-binding domain
11Beta/Gamma crystallin
111111118Cytochrome c
2121121111Double-stranded RNA binding motif
211723219147EF hand
1111264Fe-4S binding domain
121217Fibronectin type III domain
1112117Globin
15131691216613100Glutathione S-transferase, C-terminal domain
1211112110Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
3443342326Homeodomain
7322443227lactate/malate dehydrogenase, NAD binding domain
6455555540Myosin head (motor domain)
112110601046416945138802Cytochrome P450
13511810115813014496108990Protein kinase domain
1619101013131513109Pyridine nucleotide-disulphide oxidoreductase
2626232226232021187Ras family
2324181615171918150Response regulator receiver domain
122321112RNase H
6558615158555554457RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
164213Reverse transcriptase (RNA-dependent DNA polymerase)
3323332322Copper/zinc superoxide dismutase (SODC)
2211221112Iron/manganese superoxide dismutases, alpha-hairpin domain
911343133652Subtilase family
13318151256917563155852Sugar (and other) transporter
9888101181072Thioredoxin
1113Trypsin
4443444330Tubulin/FtsZ family, GTPase domain
114132214von Willebrand factor type A domain
2824481320232317196Zinc finger, C2H2 type
644735524599Zinc finger, C3HC4 type (RING finger)
3269446337Zinc knuckle
4222222218Protein-tyrosine phosphatase
1691918969103264661971,148short chain dehydrogenase
77934340491084080530Zinc-binding dehydrogenase
76557105651Thiolase, N-terminal domain
5101122759574Beta-ketoacyl synthase, N-terminal domain
45513354302Fe-2S iron-sulfur cluster binding domain
2111221212Enolase, C-terminal TIM barrel domain
101288887869Glutamine amidotransferase class-I
10101091010101180TCP-1/cpn60 chaperonin family
3645435232Glutamine synthetase, catalytic domain
2222221215Triosephosphate isomerase
2517131720201221145E1-E2 ATPase
6786876755Core histone H2A/H2B/H3/H4
121513128101812100Alpha amylase, catalytic domain
2222212215Phorbol esters/diacylglycerol binding domain (C1 domain)
7686777856Bacterial transferase hexapeptide (six repeats)
5535653537tRNA synthetases class I (I, L, M and V)
9677894757Cyclin, N-terminal domain
27396710181234153Carboxylesterase family
4444444432DNA polymerase family B
4542333428ATP synthase subunit C
3524354329Peroxidase
132465622522103Beta-lactamase
5233331323C-5 cytosine-specific DNA methylase
2928192324262223194Calcineurin-like phosphoesterase
826375712472Cellulase (glycosyl hydrolase family 5)
9887888864tRNA synthetases class II (D, K and N)
4638383339433345315Mitochondrial carrier protein
1113recA bacterial DNA recombination protein
2229151423221218155Aminotransferase class I and II
4484448440Phosphoribosyl transferase domain
14119111010101085Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
111111118Phosphoglycerate kinase
2221222215Ribosomal protein S4/S9 N-terminal domain
2222222115Ribosomal protein S12/S23
1113Bacterial regulatory helix-turn-helix proteins, AraC family
111111118Chaperonin 10 Kd subunit
13912911912984C2 domain
109191011915992PH domain
27268111322919135bZIP transcription factor
3435171320622238241Aldehyde dehydrogenase family
31651313950188180321211,539Fungal Zn(2)-Cys(6) binuclear cluster domain
3523211823301825193Cytochrome b5-like Heme/Steroid binding domain
12431464438Oxidoreductase molybdopterin binding domain
161015912191114106Oxidoreductase NAD-binding domain
3334233024282424220SNF2 family N-terminal domain
2222222216Ribosomal protein S7p/S5e
2420212124211622169Ubiquitin-conjugating enzyme
98737126860Isocitrate/isopropylmalate dehydrogenase
2222222216Ribosomal Proteins L2, RNA binding domain
111112119Hsp90 protein
2222222216Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111111118Dihydrofolate reductase
2114Chitin recognition protein
5533563636Cysteine-rich secretory protein family
111111118Ribosomal protein S3, C-terminal domain
6543465942Cupin
1231112213Annexin
2121118Eukaryotic-type carbonic anhydrase
1111116Chalcone and stilbene synthases, N-terminal domain
53333534292-oxoacid dehydrogenases acyltransferase (catalytic domain)
5824574540Catalase
1111116Disintegrin
35224420UDP-glucoronosyl and UDP-glucosyl transferase
151811481091489Aminotransferase class-III
2221221214Ribosomal protein S19
211111119DNA gyrase B
118449115961Thiamine pyrophosphate enzyme, central domain
8444474641Lyase
2222222216Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
112Sodium:neurotransmitter symporter family
3121221113Adenylate and Guanylate cyclase catalytic domain
111111118ATP synthase delta (OSCP) subunit
211111119Orotidine 5'-phosphate decarboxylase / HUMPS family
111111118Indole-3-glycerol phosphate synthase
12115Aromatic amino acid lyase
111111118Pyruvate kinase, barrel domain
111010101111101083Kinesin motor domain
2429252425252436212DnaJ domain
1314141414141412109Proteasome subunit
149559981170Major intrinsic protein
111111118ATP synthase
161222115Glycosyl hydrolase family 1
1111111183'5'-cyclic nucleotide phosphodiesterase
111111118Profilin
3212221215Ribosomal protein L22p/L17e
2221221214Ribosomal protein L14p/L23e
1081012889873Ubiquitin family
4443443329Cofilin/tropomyosin-type actin-binding protein
432333222214-3-3 protein
4242223322Alkaline phosphatase
112111613Zinc carboxypeptidase
4067271830442242290Aldo/keto reductase family
461285415357Myb-like DNA-binding domain
4444443431Forkhead domain
1352112318Glycosyl hydrolases family 32 N-terminal domain
2212221214Ribosomal protein L16p/L10e
2211118Ribosomal protein S14p/S29e
4333322323FKBP-type peptidyl-prolyl cis-trans isomerase
111111118Glutathione peroxidase
213
55847106752Flavodoxin
111111118Calreticulin family
5975541743Common central domain of tyrosinase
10126671061067Aminotransferase class-V
111111118Ribonucleotide reductase, small chain
5243404347483850361DEAD/DEAH box helicase
8782697673767375611Helicase conserved C-terminal domain
112Fructose-bisphosphate aldolase class-I
111111118EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
2222222216Ribosomal protein L23
111111118Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11111117Ribosomal protein L5
5775657547Pyridoxal-dependent decarboxylase conserved domain
3325332324Citrate synthase, C-terminal domain
5554555539GHMP kinases N terminal domain
1167510106762Biotin carboxylase, N-terminal domain
111111118Tryptophan synthase alpha chain
10121071110121183Pyridoxal-phosphate dependent enzyme
1714151511181218120NUDIX domain
6745553641pfkB family carbohydrate kinase
32519139Glycosyl hydrolases family 28
622863853Luciferase-like monooxygenase
2222222216Ribosomal protein L3
2222222115Ribosomal protein L11, RNA binding domain
201411101613915108Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
224Lipoxygenase
5444444433ATP synthase alpha/beta chain, C terminal domain
5554445537Calponin homology (CH) domain
2443225224Glutamine amidotransferases class-II
2222222216Ribosomal protein S15
111111118Thaumatin family
111111129Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
2222222216Ribosomal protein S2
3222221216SRF-type transcription factor (DNA-binding and dimerisation domain)
8686774955GATA zinc finger
2733381031254324231Amino acid permease
61246463546Prolyl oligopeptidase family
2222221215Ribosomal protein L30p/L7e
131210681081481Histidine phosphatase superfamily (branch 2)
111111118Respiratory-chain NADH dehydrogenase, 30 Kd subunit
6446573540Aconitase family (aconitate hydratase)
1211139Glycosyl hydrolase family 10
2343244224Glycosyl hydrolases family 17
2112221213Ribosomal protein S5, N-terminal domain
11111117Nucleoside diphosphate kinase
111115Tetraspanin family
2221222215Ribosomal protein S10p/S20e
7524573740Arrestin (or S-antigen), N-terminal domain
111111118Phosphoglucose isomerase
111111118Carbohydrate phosphorylase
11111117SecY translocase
111111118Respiratory-chain NADH dehydrogenase, 49 Kd subunit
2222222216Ribosomal protein L6
3333333324Polyprenyl synthetase
7544554438Hexokinase
16125119116878Dynamin family
211111119Transcription factor TFIID (or TATA-binding protein, TBP)
134345113750Rieske [2Fe-2S] domain
21111118Phytochrome region
1389712148980Biotin-requiring enzyme
111112119Phosphofructokinase
2111121110Ribosomal protein S17
111111118Hydroxymethylglutaryl-coenzyme A reductase
8433654336FGGY family of carbohydrate kinases, N-terminal domain
11Sodium:dicarboxylate symporter family
24131181637520134Enoyl-CoA hydratase/isomerase
2222222216Ribosomal protein S9/S16
2222222216Transcription factor TFIIB repeat
101196893763Cytidine and deoxycytidylate deaminase zinc-binding region
1111211210Molybdopterin oxidoreductase
6318545234Chromo (CHRromatin Organisation MOdifier) domain
4222332321Phosphatidylinositol-specific phospholipase C, Y domain
5423443328Phosphatidylinositol-specific phospholipase C, X domain
1211641013101379D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2222222216Malic enzyme, N-terminal domain
11PEP-utilising enzyme, mobile domain
22222222166-phosphogluconate dehydrogenase, C-terminal domain
11167513149984Multicopper oxidase
71097989766WW domain
111112119Ribosomal RNA adenine dimethylase
111221412Yeast PIR protein repeat
115112102109102998988816WD domain, G-beta repeat
6544764541Heavy-metal-associated domain
3343432224Adenylate kinase
2322222318Phosphoglucomutase/phosphomannomutase, C-terminal domain
2222221114Ribosomal protein S8
121111119Ribosomal protein S11
4445441430LIM domain
123Matrixin
2215321218Regulator of chromosome condensation (RCC1) repeat
222222214Ribosomal protein S13/S18
3323222219chorismate binding enzyme
333333232360s Acidic ribosomal protein
5444444332Prenyltransferase and squalene oxidase repeat
9354446540Protein kinase C terminal domain
111111118Single-strand binding protein family
211111119S-adenosylmethionine synthetase, N-terminal domain
10768876759Bromodomain
21101191633621127Acyl-CoA dehydrogenase, C-terminal domain
1815151616151415124Ubiquitin carboxyl-terminal hydrolase
1113Ribosomal protein L36
2321222216Ribonuclease T2 family
3333333324HSF-type DNA-binding
2222222216SRP54-type protein, GTPase domain
11111117Urease alpha-subunit, N-terminal domain
1425768971389Serine carboxypeptidase
7777877656Phosphatidylinositol 3- and 4-kinase
1311241316Transketolase, thiamine diphosphate binding domain
13127Glycosyl hydrolases family 11
7432332327Inositol monophosphatase family
4443443531Glutaredoxin
2422224321Isocitrate lyase family
2223222217Serine hydroxymethyltransferase
8324492638Iron-containing alcohol dehydrogenase
2222222216Ribosomal protein L10
4323335326KOW motif
11Ribosomal protein L34
11Ribosomal protein L33
3322321218RF-1 domain
2821668437Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
111111118DNA polymerase family A
111111118IMP dehydrogenase / GMP reductase domain
111111118Glucose-6-phosphate dehydrogenase, NAD binding domain
8765556547Protein phosphatase 2C
4324322323Nucleotidyl transferase
4622251628Carbonic anhydrase
2311321215Phosphoribulokinase / Uridine kinase family
5654444638Fatty acid desaturase
6666666648MutS domain V
111111118Delta-aminolevulinic acid dehydratase
7855656547Arginase family
6667666750MCM P-loop domain
3323331321Squalene/phytoene synthase
1410911101281185FHA domain
58514132481053262429AMP-binding enzyme
6335353432G-protein alpha subunit
5888848756HMG (high mobility group) box
1821141212141315119His Kinase A (phospho-acceptor) domain
2233223219Armadillo/beta-catenin-like repeat
1320231611152311132Tetratricopeptide repeat
4341323323Ion transport protein
211111119DNA gyrase/topoisomerase IV, subunit A
741169610962BRCA1 C Terminus (BRCT) domain
611886613866Glycosyl transferases group 1
3262224223Glycosyl transferase family 2
2222221215SAM domain (Sterile alpha motif)
111111118linker histone H1 and H5 family
111111118Ribosomal protein L7/L12 C-terminal domain
415Pectate lyase
12111129ribonuclease
11111117Urease, gamma subunit
5444444635CoA-ligase
112716241114117121Phosphopantetheine attachment site
3423332323Formyl transferase
101278898971Metallopeptidase family M24
11211112432Leucine Rich Repeat
101637119113118143alpha/beta hydrolase fold
3333333324RNA polymerase Rpb2, domain 6
4424443530PB1 domain
2222222216Staphylococcal nuclease homologue
18111010111191191Rab-GTPase-TBC domain
111111118Tudor domain
111111118WH1 domain
5344543432Zinc finger, ZZ type
2212211112HRDC domain
9897888663CBS domain
2221222215Ribosomal protein L13
2222222216Ribosomal protein L4/L1 family
111211119Clp protease
4323433426S1 RNA binding domain
111111118HIUase/Transthyretin family
3342323727AhpC/TSA family
4444454332tRNA synthetases class I (W and Y)
112112210UvrD/REP helicase N-terminal domain
6747864648Rhodanese-like domain
2222222216Universal stress protein family
3650311625301732237Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
111111118C-terminal regulatory domain of Threonine dehydratase
2221222215AIR synthase related protein, N-terminal domain
6676667549tRNA synthetase class II core domain (G, H, P, S and T)
111111118SpoU rRNA Methylase family
2222222216Tetrapyrrole (Corrin/Porphyrin) Methylases
111111118Glycosyl transferase family, a/b domain
111111118PDZ domain
148549129869Class II Aldolase and Adducin N-terminal domain
4434444431Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
5534554536Fes/CIP4, and EFC/F-BAR homology domain
3152334122IQ calmodulin-binding motif
2222222115Phosphoinositide 3-kinase family, accessory domain (PIK domain)
3252233222Phospholipase D Active site motif
5515641532Regulator of G protein signaling domain
3333333324GTPase-activator protein for Ras-like GTPase
4444444432RasGEF domain
4444444432RasGEF N-terminal motif
8688777758RhoGAP domain
6656665545RhoGEF domain
3225232221SPRY domain
4332333223RNA polymerase Rpb1, domain 2
111111118Guanylate kinase
4434334328Gelsolin repeat
8584648851UBA/TS-N domain
1515171412101112106PHD-finger
111115GGL domain
7666666548HECT-domain (ubiquitin-transferase)
11211118Helix-hairpin-helix motif
111111129MSP (Major sperm protein) domain
3353243326Ribonuclease III domain
6413452530Region in Clathrin and VPS
3223333322RanBP1 domain
11211129PPIC-type PPIASE domain
3222232218Zn-finger in Ran binding protein and others
10813781081074Zinc finger C-x8-C-x5-C-x3-H type (and similar)
3134232220Poly(ADP-ribose) polymerase catalytic domain
121111119Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
81142141291813127F-box domain
111111118Elongation factor 1 gamma, conserved domain
3232232118Calpain family cysteine protease
222118Copper fist DNA binding domain
5554565540CRAL/TRIO domain
19155321321641152BTB/POZ domain
12115Ricin-type beta-trefoil lectin domain
111111118Inhibitor of Apoptosis domain
6444433432Voltage gated chloride channel
3523151323Caspase domain
1101214221GDSL-like Lipase/Acylhydrolase
111111118Poly-adenylate binding protein, unique domain
1743161514181717157ABC transporter transmembrane region
55Integrase core domain
65747106752FAD binding domain
41265556245Condensation domain
111111118S-adenosyl-L-homocysteine hydrolase, NAD binding domain
3111111110HAMP domain
2222222216ribosomal L5P family C-terminus
5655664542Insulinase (Peptidase family M16)
3333353427Dehydrogenase E1 component
111111118Lumazine binding domain
6664666646Elongation factor G C-terminus
4445575640HMGL-like
4444444432DnaJ central domain
11Sulfotransferase domain
131112211Starch binding domain
3323332322Ribosomal protein L1p/L10e family
86776761158Cation transporting ATPase, C-terminus
158988971276Cation transporter/ATPase, N-terminus
11111117dUTPase
6445573539Aconitase C-terminal domain
3433343326Amino acid kinase family
111111118N-(5'phosphoribosyl)anthranilate (PRA) isomerase
59921758569Acyl transferase domain
11111117Urease beta subunit
2852756338Dihydrodipicolinate synthetase family
2114301316172818157haloacid dehalogenase-like hydrolase
6631252530Glycosyl hydrolases family 2
2827624738Glycosyl hydrolases family 18
211111119Proliferating cell nuclear antigen, N-terminal domain
1111116Translation initiation factor IF-3, C-terminal domain
1111116Acylphosphatase
111121119Adenylosuccinate synthetase
131331113Asparaginase, N-terminal
3222221216Peptidase S24-like
2111221212Inorganic pyrophosphatase
141698121251490Glycosyl hydrolases family 16
3413124119Glycosyl hydrolases family 15
7184341081266NADH:flavin oxidoreductase / NADH oxidase family
3411231153-hydroxyacyl-CoA dehydrogenase, C-terminal domain
2211222315Glycosyl hydrolase family 20, catalytic domain
5545666542HhH-GPD superfamily base excision DNA repair protein
1111221110AIR carboxylase
192281510181024126GMC oxidoreductase
2225222219Asparagine synthase
114112423Fungal cellulose binding domain
7656765648Septin
111111129EF-1 guanine nucleotide exchange domain
111111118Homoserine dehydrogenase
712228102750Flavin-binding monooxygenase-like
3333333324tRNA synthetases class I (E and Q), catalytic domain
3111222214tRNA synthetases class I (R)
5443444533XPG N-terminal domain
1810751330414101Metallo-beta-lactamase superfamily
235F5/8 type C domain
3223322219Choline/Carnitine o-acyltransferase
21112119Putative esterase
11Glycosyl hydrolase family 9
111111118Ferrochelatase
2321222216Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
11111117Arginosuccinate synthase
111111118Electron transfer flavoprotein FAD-binding domain
3333333324RNB domain
58