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PFAM Domains • Pseudoidium neolycopersici MF1 v1.0
Annotations/GenomesBlugr2BlugrR1_1Blugra1Erynec1Golci1Psene1TotalAnnotation Description
PFAMs
6,5546,5666,1015,9226,1846,44537,772
323232333235196ATPase family associated with various cellular activities (AAA)
191921202521125ABC transporter
44444424ATP synthase alpha/beta family, nucleotide-binding domain
15151613141386Elongation factor Tu GTP binding domain
77777944Helix-loop-helix DNA-binding domain
211976231187Hsp20/alpha crystallin family
99789850Hsp70 protein
88876845KH domain
15151410111378SH3 domain
1010910101059Actin
44443625Ankyrin repeat
77646737ADP-ribosylation factor family
55555934Eukaryotic aspartyl protease
44434423Cyclic nucleotide-binding domain
111115Cytochrome c
12126Double-stranded RNA binding motif
44434322EF hand
11134Fe-4S binding domain
111115Fibronectin type III domain
33332418Glutathione S-transferase, C-terminal domain
1111116Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
34432319Homeodomain
22223213lactate/malate dehydrogenase, NAD binding domain
45655429Myosin head (motor domain)
14141211131074Cytochrome P450
17317385838285681Protein kinase domain
88878847Pyridine nucleotide-disulphide oxidoreductase
232321212123132Ras family
1112121191267Response regulator receiver domain
333286750RNase H
545448485257313RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
2312834Reverse transcriptase (RNA-dependent DNA polymerase)
111115Copper/zinc superoxide dismutase (SODC)
22222212Iron/manganese superoxide dismutases, alpha-hairpin domain
555511637Subtilase family
212115181430119Sugar (and other) transporter
1417111092283Thioredoxin
44444424Tubulin/FtsZ family, GTPase domain
1010710101461Zinc finger, C2H2 type
77644533Zinc finger, C3HC4 type (RING finger)
81142761167Zinc knuckle
22222212Protein-tyrosine phosphatase
181918212328127short chain dehydrogenase
55555631Zinc-binding dehydrogenase
33333419Thiolase, N-terminal domain
33323317Beta-ketoacyl synthase, N-terminal domain
2221182Fe-2S iron-sulfur cluster binding domain
1111116Enolase, C-terminal TIM barrel domain
88788847Glutamine amidotransferase class-I
1010109101059TCP-1/cpn60 chaperonin family
22222313Glutamine synthetase, catalytic domain
1111318Triosephosphate isomerase
12121213131375E1-E2 ATPase
99999954Core histone H2A/H2B/H3/H4
33334420Alpha amylase, catalytic domain
22211210Phorbol esters/diacylglycerol binding domain (C1 domain)
88878544Bacterial transferase hexapeptide (six repeats)
55555530tRNA synthetases class I (I, L, M and V)
88868846Cyclin, N-terminal domain
777962359Carboxylesterase family
4445522DNA polymerase family B
44432421ATP synthase subunit C
33232215Peroxidase
1113C-5 cytosine-specific DNA methylase
17171612151794Calcineurin-like phosphoesterase
44443423Cellulase (glycosyl hydrolase family 5)
66675737tRNA synthetases class II (D, K and N)
313030322730180Mitochondrial carrier protein
10101112121267Aminotransferase class I and II
55434425Phosphoribosyl transferase domain
1212119101064Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111116Phosphoglycerate kinase
22222212Ribosomal protein S4/S9 N-terminal domain
33423217Ribosomal protein S12/S23
111115Chaperonin 10 Kd subunit
77810101052C2 domain
1111111191164PH domain
89859544bZIP transcription factor
88988849Aldehyde dehydrogenase family
394522262331186Fungal Zn(2)-Cys(6) binuclear cluster domain
14141314181588Cytochrome b5-like Heme/Steroid binding domain
66655533Oxidoreductase NAD-binding domain
191920191719113SNF2 family N-terminal domain
22223213Ribosomal protein S7p/S5e
171717141818101Ubiquitin-conjugating enzyme
55545428Isocitrate/isopropylmalate dehydrogenase
22222212Ribosomal Proteins L2, RNA binding domain
1111116Hsp90 protein
22222212Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111116Dihydrofolate reductase
11Chitin recognition protein
1112128Cysteine-rich secretory protein family
1111116Ribosomal protein S3, C-terminal domain
111115Annexin
11114Eukaryotic-type carbonic anhydrase
1111217Chalcone and stilbene synthases, N-terminal domain
333323172-oxoacid dehydrogenases acyltransferase (catalytic domain)
22221211Catalase
1111116Disintegrin
11114UDP-glucoronosyl and UDP-glucosyl transferase
44433422Aminotransferase class-III
22112210Ribosomal protein S19
1111116DNA gyrase B
22212211Thiamine pyrophosphate enzyme, central domain
33333318Lyase
1111116Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1111116Adenylate and Guanylate cyclase catalytic domain
1111116ATP synthase delta (OSCP) subunit
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
1111116Indole-3-glycerol phosphate synthase
1111116Pyruvate kinase, barrel domain
101091010958Kinesin motor domain
242420232527143DnaJ domain
14141412151483Proteasome subunit
44445526Major intrinsic protein
1111116ATP synthase
11121173'5'-cyclic nucleotide phosphodiesterase
1111217Profilin
22222212Ribosomal protein L22p/L17e
22213313Ribosomal protein L14p/L23e
887711849Ubiquitin family
44453525Cofilin/tropomyosin-type actin-binding protein
3333231714-3-3 protein
1113Alkaline phosphatase
45553527Aldo/keto reductase family
33363523Myb-like DNA-binding domain
44433321Forkhead domain
22221211Ribosomal protein L16p/L10e
1124210Ribosomal protein S14p/S29e
33322215FKBP-type peptidyl-prolyl cis-trans isomerase
1111116Glutathione peroxidase
22433317Flavodoxin
1111116Calreticulin family
22322213Common central domain of tyrosinase
55524425Aminotransferase class-V
1111116Ribonucleotide reductase, small chain
434340414743257DEAD/DEAH box helicase
676767666467398Helicase conserved C-terminal domain
111115EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
21212210Ribosomal protein L23
1111116Pyridoxal-dependent decarboxylase, C-terminal sheet domain
22222111Ribosomal protein L5
33344421Pyridoxal-dependent decarboxylase conserved domain
33333318Citrate synthase, C-terminal domain
55555631GHMP kinases N terminal domain
45554528Biotin carboxylase, N-terminal domain
1111116Tryptophan synthase alpha chain
77698845Pyridoxal-phosphate dependent enzyme
99988851NUDIX domain
44433321pfkB family carbohydrate kinase
22222212Ribosomal protein L3
22224214Ribosomal protein L11, RNA binding domain
99979750Histidine phosphatase superfamily (branch 1)
1111116Thymidylate synthase
44444424ATP synthase alpha/beta chain, C terminal domain
66284531Calponin homology (CH) domain
22223213Glutamine amidotransferases class-II
22222212Ribosomal protein S15
1111116Thaumatin family
1111116Fructose-1-6-bisphosphatase, N-terminal domain
1111116Ribonucleotide reductase, all-alpha domain
22222212Ribosomal protein S2
22221211SRF-type transcription factor (DNA-binding and dimerisation domain)
77567739GATA zinc finger
78864639Amino acid permease
22222212Prolyl oligopeptidase family
22122211Ribosomal protein L30p/L7e
77776741Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
44444424Aconitase family (aconitate hydratase)
33221213Glycosyl hydrolases family 17
22212110Ribosomal protein S5, N-terminal domain
1111116Nucleoside diphosphate kinase
1112117Tetraspanin family
22112210Ribosomal protein S10p/S20e
23342216Arrestin (or S-antigen), N-terminal domain
111115Phosphoglucose isomerase
1111116Carbohydrate phosphorylase
1111116SecY translocase
1111116Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22223213Ribosomal protein L6
33333318Polyprenyl synthetase
33323317Hexokinase
44355526Dynamin family
111115Transcription factor TFIID (or TATA-binding protein, TBP)
22222212Rieske [2Fe-2S] domain
22221211Phytochrome region
77564736Biotin-requiring enzyme
1121117Phosphofructokinase
33221213Ribosomal protein S17
1111116Hydroxymethylglutaryl-coenzyme A reductase
33322215FGGY family of carbohydrate kinases, N-terminal domain
55574733Enoyl-CoA hydratase/isomerase
22223213Ribosomal protein S9/S16
22222212Transcription factor TFIIB repeat
76345530Cytidine and deoxycytidylate deaminase zinc-binding region
1111116Molybdopterin oxidoreductase
6551310645Chromo (CHRromatin Organisation MOdifier) domain
22222212Phosphatidylinositol-specific phospholipase C, Y domain
33343420Phosphatidylinositol-specific phospholipase C, X domain
22231313D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
1112128Malic enzyme, N-terminal domain
11111166-phosphogluconate dehydrogenase, C-terminal domain
22223112Multicopper oxidase
99876544WW domain
1111116Ribosomal RNA adenine dimethylase
1111116Yeast PIR protein repeat
979797909894573WD domain, G-beta repeat
22233315Heavy-metal-associated domain
33334319Adenylate kinase
22222212Phosphoglucomutase/phosphomannomutase, C-terminal domain
22211210Ribosomal protein S8
1111217Ribosomal protein S11
33434421LIM domain
33226218Regulator of chromosome condensation (RCC1) repeat
22113211Ribosomal protein S13/S18
22222212chorismate binding enzyme
3333532060s Acidic ribosomal protein
44434322Prenyltransferase and squalene oxidase repeat
44344423Protein kinase C terminal domain
1111116Single-strand binding protein family
1111116S-adenosylmethionine synthetase, N-terminal domain
77777742Bromodomain
55555530Acyl-CoA dehydrogenase, C-terminal domain
14141314141483Ubiquitin carboxyl-terminal hydrolase
112Ribosomal protein L36
1111116Ribonuclease T2 family
33342419HSF-type DNA-binding
22222212SRP54-type protein, GTPase domain
77644432Serine carboxypeptidase
88888848Phosphatidylinositol 3- and 4-kinase
1111116Transketolase, thiamine diphosphate binding domain
22232314Inositol monophosphatase family
33323418Glutaredoxin
22223213Isocitrate lyase family
22122211Serine hydroxymethyltransferase
111115Iron-containing alcohol dehydrogenase
22222212Ribosomal protein L10
44443423KOW motif
11114Ribosomal protein L34
111115Ribosomal protein L33
33333318RF-1 domain
111115Sodium:solute symporter family
1121117Imidazoleglycerol-phosphate dehydratase
111115DNA polymerase family A
111115IMP dehydrogenase / GMP reductase domain
1111116Glucose-6-phosphate dehydrogenase, NAD binding domain
55555530Protein phosphatase 2C
22232314Nucleotidyl transferase
1111116Carbonic anhydrase
1131118Phosphoribulokinase / Uridine kinase family
55555530Fatty acid desaturase
66665635MutS domain V
111115Delta-aminolevulinic acid dehydratase
11114Arginase family
66756636MCM P-loop domain
22233315Squalene/phytoene synthase
8881071051FHA domain
14141514141586AMP-binding enzyme
33333318G-protein alpha subunit
66654532HMG (high mobility group) box
88886846His Kinase A (phospho-acceptor) domain
33233317Armadillo/beta-catenin-like repeat
1110913111468Tetratricopeptide repeat
22121210Ion transport protein
1111116DNA gyrase/topoisomerase IV, subunit A
54365427BRCA1 C Terminus (BRCT) domain
44444424Glycosyl transferases group 1
32224215Glycosyl transferase family 2
44422218SAM domain (Sterile alpha motif)
1111116linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
11Pectate lyase
112ribonuclease
33333318CoA-ligase
55545630Phosphopantetheine attachment site
33222214Formyl transferase
66676839Metallopeptidase family M24
66424224Leucine Rich Repeat
66455834alpha/beta hydrolase fold
3334316RNA polymerase Rpb2, domain 6
44444424PB1 domain
22221211Staphylococcal nuclease homologue
12121311121171Rab-GTPase-TBC domain
1111116Tudor domain
1111116WH1 domain
33344421Zinc finger, ZZ type
1111116HRDC domain
66656635CBS domain
22222212Ribosomal protein L13
22222212Ribosomal protein L4/L1 family
1111116Clp protease
44433321S1 RNA binding domain
1113HIUase/Transthyretin family
33222214AhpC/TSA family
44444424tRNA synthetases class I (W and Y)
1111116UvrD/REP helicase N-terminal domain
77765638Rhodanese-like domain
22222212Universal stress protein family
999771152Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
1111116C-terminal regulatory domain of Threonine dehydratase
22222212AIR synthase related protein, N-terminal domain
77777742tRNA synthetase class II core domain (G, H, P, S and T)
1111116SpoU rRNA Methylase family
1111116Tetrapyrrole (Corrin/Porphyrin) Methylases
1111116Glycosyl transferase family, a/b domain
1111116Class II Aldolase and Adducin N-terminal domain
44444424Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
55545529Fes/CIP4, and EFC/F-BAR homology domain
22222212IQ calmodulin-binding motif
22222212Phosphoinositide 3-kinase family, accessory domain (PIK domain)
22222212Phospholipase D Active site motif
44444424Regulator of G protein signaling domain
44384427GTPase-activator protein for Ras-like GTPase
44434423RasGEF domain
44434423RasGEF N-terminal motif
88888848RhoGAP domain
66666636RhoGEF domain
33333318SPRY domain
3343215RNA polymerase Rpb1, domain 2
1111116Guanylate kinase
33323317Gelsolin repeat
55563428UBA/TS-N domain
14141113131378PHD-finger
1111116GGL domain
66666636HECT-domain (ubiquitin-transferase)
1113Helix-hairpin-helix motif
11114MSP (Major sperm protein) domain
33333318Ribonuclease III domain
44347426Region in Clathrin and VPS
33322316RanBP1 domain
2111117PPIC-type PPIASE domain
22122211Zn-finger in Ran binding protein and others
76465735Zinc finger C-x8-C-x5-C-x3-H type (and similar)
1111116Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
8835327F-box domain
1111127Elongation factor 1 gamma, conserved domain
1111116Calpain family cysteine protease
22122211Copper fist DNA binding domain
44444424CRAL/TRIO domain
55544427BTB/POZ domain
1111116Inhibitor of Apoptosis domain
33332317Voltage gated chloride channel
22222212Caspase domain
11123311GDSL-like Lipase/Acylhydrolase
111115Poly-adenylate binding protein, unique domain
111115POLO box duplicated region
88988950ABC transporter transmembrane region
132327Integrase core domain
44433321FAD binding domain
1111116Condensation domain
1111217S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1111116HAMP domain
22222212ribosomal L5P family C-terminus
66566635Insulinase (Peptidase family M16)
33332317Dehydrogenase E1 component
1111116Lumazine binding domain
66666636Elongation factor G C-terminus
44443423HMGL-like
44444424DnaJ central domain
1111116Starch binding domain
33333318Ribosomal protein L1p/L10e family
33334319Cation transporting ATPase, C-terminus
55456530Cation transporter/ATPase, N-terminus
1111116dUTPase
44444424Aconitase C-terminal domain
33333318Amino acid kinase family
1111116N-(5'phosphoribosyl)anthranilate (PRA) isomerase
33313215Acyl transferase domain
8881010852haloacid dehalogenase-like hydrolase
99976747Glycosyl hydrolases family 18
1111116Proliferating cell nuclear antigen, N-terminal domain
1111116Translation initiation factor IF-3, C-terminal domain
1111116Adenylosuccinate synthetase
1111116Asparaginase, N-terminal
33213416Peptidase S24-like
1111116Inorganic pyrophosphatase
888910952Glycosyl hydrolases family 16
1111116Glycosyl hydrolases family 15
123NADH:flavin oxidoreductase / NADH oxidase family
11111163-hydroxyacyl-CoA dehydrogenase, C-terminal domain
2111117Glycosyl hydrolase family 20, catalytic domain
44453525HhH-GPD superfamily base excision DNA repair protein
1111116AIR carboxylase
1111116GMC oxidoreductase
22222212Asparagine synthase
66765838Septin
1111116EF-1 guanine nucleotide exchange domain
1111116Homoserine dehydrogenase
1214Flavin-binding monooxygenase-like
33333318tRNA synthetases class I (E and Q), catalytic domain
1111116tRNA synthetases class I (R)
45444425XPG N-terminal domain
22232314Metallo-beta-lactamase superfamily
1111116Choline/Carnitine o-acyltransferase
1111116Putative esterase
1111116Ferrochelatase
1111116Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1111116Arginosuccinate synthase
2211118Electron transfer flavoprotein FAD-binding domain
33333318RNB domain
112Dioxygenase
33333318CNH domain
1112117Diacylglycerol kinase catalytic domain
55554529Dual specificity phosphatase, catalytic domain
22212211P21-Rho-binding domain
1212812111267PX domain
22222212Ras association (RalGDS/AF-6) domain
55555429UBX domain
55535528VHS domain
1111116Phosphoinositide 3-kinase C2
2222210DAHP synthetase I family
44433321Carbon-nitrogen hydrolase
1111116Prephenate dehydratase
33343420Syntaxin
44344423Pumilio-family RNA binding repeat
77536634Histone-like transcription factor (CBF/NF-Y) and archaeal histone
1111116Pterin binding enzyme
22222212ER lumen protein retaining receptor
22212211tRNA N6-adenosine threonylcarbamoyltransferase
1111116Histidinol dehydrogenase
23313315impB/mucB/samB family
1111116Ribosomal L15
33334319Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
1113Ribosomal prokaryotic L21 protein
1111116Ribosomal L28 family
1111116Ribosomal L29 protein
1214Ribosomal L39 protein
1111116Ribosomal S17
11116111Ribulose-phosphate 3 epimerase family
111115Translationally controlled tumour protein
111115RNA pseudouridylate synthase
44444424Histone deacetylase domain
111137POT family
1111116PWWP domain
111110810757SET domain
1112128Isochorismatase family
1111116Permease family
1111116Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
44444424XPG I-region
33333318DNA photolyase
11Cation-independent mannose-6-phosphate receptor repeat
11111166,7-dimethyl-8-ribityllumazine synthase
111115Ribosomal protein S16
22222212Acyl CoA binding protein
44444424Cullin family
22212211FAD binding domain
22323214O-methyltransferase domain
44422218EamA-like transporter family
88878847ThiF family
1111116Ribosomal family S4e
1113Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
1111116Ammonium Transporter Family
44444525Sulfate permease family
1111116MATH domain
1111116Dehydratase family
1111116Transaldolase/Fructose-6-phosphate aldolase
222129Mechanosensitive ion channel
1111116GTP cyclohydrolase II
11111163,4-dihydroxy-2-butanone 4-phosphate synthase
44426424Adaptor complexes medium subunit family
76656535Exonuclease
1121117Dipeptidyl peptidase IV (DPP IV) N-terminal region
1112229Glycosyl hydrolase family 3 N terminal domain
2221119Ribosomal protein L44
121116Sodium:sulfate symporter transmembrane region
112116DNA-dependent RNA polymerase
1113FAD binding domain in molybdopterin dehydrogenase
123Mononegavirales RNA dependent RNA polymerase
1111116Glycosyl transferase family 4
1121117HCO3- transporter family
22222212Nucleosome assembly protein (NAP)
44434423Synaptobrevin
111115GMP synthase C terminal domain
33333318Adenosine/AMP deaminase
33333217Oxidoreductase FAD-binding domain
22222212Histidine biosynthesis protein
33333318Glycosyltransferase family 20
22222212Carbamoyl-phosphate synthase small chain, CPSase domain
2221119Probable molybdopterin binding domain
44544425Sec1 family
22222212GDP dissociation inhibitor
33322316Sodium/hydrogen exchanger family
2222210RNA polymerase Rpb3/RpoA insert domain
44444525Initiation factor 2 subunit family
33222214Electron transfer flavoprotein domain
1113Uricase
1111318Ribosomal S3Ae family
111115Ribosomal L27 protein
1111116GTP1/OBG
1113Gamma-glutamyltranspeptidase
1111116Ribosomal L40e family
1111116GrpE
22222212TatD related DNase
22233315Inhibitor of apoptosis-promoting Bax1
1111116Eukaryotic DNA topoisomerase I, catalytic core
33244420Dynamin central region
116-O-methylguanine DNA methyltransferase, DNA binding domain
1111217Bacteriorhodopsin-like protein
22321212Carboxyl transferase domain
22212211UbiA prenyltransferase family
111126Endoribonuclease L-PSP
22222212Phosphorylase superfamily
44443524Cys/Met metabolism PLP-dependent enzyme
1111116Glycosyl hydrolases family 31
111115NADH ubiquinone oxidoreductase, 20 Kd subunit
33334319ABC-2 type transporter
111115Bestrophin, RFP-TM, chloride channel
33333318Amino-transferase class IV
55455529CDP-alcohol phosphatidyltransferase
1111116Calpain large subunit, domain III
22223314ATP dependent DNA ligase domain
1111116FMN-dependent dehydrogenase
1111116Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
11111163-beta hydroxysteroid dehydrogenase/isomerase family
1111116Glycosyl hydrolases family 38 N-terminal domain
22242416Cutinase
1111116Ribosomal protein S18
1111116Clathrin light chain
1111116Galactose-1-phosphate uridyl transferase, N-terminal domain
22222212Ubiquitin carboxyl-terminal hydrolase, family 1
1111116Ribosomal protein S19e
1111116Ribosomal protein S6e
44413420Transcription factor S-II (TFIIS)
1111116Omp85 superfamily domain
44444424emp24/gp25L/p24 family/GOLD
1111116NifU-like domain
1111116Cyclin-dependent kinase regulatory subunit
1111116Asparaginase
1111116F-actin capping protein, beta subunit
1111116Fructose-bisphosphate aldolase class-II
22322213Semialdehyde dehydrogenase, NAD binding domain
33333318DNA mismatch repair protein, C-terminal domain
1111116Dephospho-CoA kinase
11114MAPEG family
1111116G10 protein
1111116Heme oxygenase
1111116Succinate dehydrogenase/Fumarate reductase transmembrane subunit
1111116DNA topoisomerase
1111116Glucose inhibited division protein A
1113Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
1111116RNA 3'-terminal phosphate cyclase
666656353' exoribonuclease family, domain 1
111115tRNA pseudouridine synthase D (TruD)
111115Coenzyme A transferase
33345422SPFH domain / Band 7 family
33332216Cytidylyltransferase family
11