PFAM Domains • Coprinellus pellucidus v1.0
Annotations/GenomesAmath1Copci1Copci_AmutBmut1Copmic2Coppel1Copscl1Guyne1Marfi1Panst_KUC8834_1_1PleosPC9_1TotalAnnotation Description
PFAMs
7,0667,6787,7209,3259,7749,1788,2589,4188,9937,91485,324
121157 transmembrane receptor (rhodopsin family)
117 transmembrane receptor (Secretin family)
39434448444144515146451ATPase family associated with various cellular activities (AAA)
31464557534450545337470ABC transporter
444444444440ATP synthase alpha/beta family, nucleotide-binding domain
123EGF-like domain
14151516151515161714152Elongation factor Tu GTP binding domain
10101114121111151410118Helix-loop-helix DNA-binding domain
8773797911674Hsp20/alpha crystallin family
7882698888999Hsp70 protein
887888888879KH domain
11Kunitz/Bovine pancreatic trypsin inhibitor domain
11111117SH2 domain
24313032192134292929278SH3 domain
11121213121212151311123Actin
22938089123327244222444Ankyrin repeat
7881089788881ADP-ribosylation factor family
15131313131219203323174Eukaryotic aspartyl protease
333333443332Cyclic nucleotide-binding domain
11Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
11111112110Cytochrome c
8668876117673Double-stranded RNA binding motif
18191923120191720156EF hand
12113131134Fe-4S binding domain
11121111110Fibronectin type III domain
16141313118718137120Glutathione S-transferase, C-terminal domain
133222111218Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
213Hemopexin
910101812101112119112Homeodomain
2222121113Laminin EGF domain
222322322323lactate/malate dehydrogenase, NAD binding domain
455754555550Myosin head (motor domain)
7413413417399941663121251481,459Cytochrome P450
1321361361992521831582611851581,800Protein kinase domain
15171722131215181921169Pyridine nucleotide-disulphide oxidoreductase
23323434313325283126297Ras family
8888871010101188Response regulator receiver domain
322302414282815128RNase H
69646880666572736767691RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
134Reverse transcriptase (RNA-dependent DNA polymerase)
1223181119Copper/zinc superoxide dismutase (SODC)
222222243223Iron/manganese superoxide dismutases, alpha-hairpin domain
1712122614376959147Subtilase family
23202126232246433931294Sugar (and other) transporter
109910111114111314112Thioredoxin
555655567655Tubulin/FtsZ family, GTPase domain
2346353531von Willebrand factor type A domain
43606779372497746856605Zinc finger, C2H2 type
5248556891167627159502Zinc finger, C3HC4 type (RING finger)
23521181811817311728404Zinc knuckle
222232212220Protein-tyrosine phosphatase
444948615239959612377684short chain dehydrogenase
31292942252139485241357Zinc-binding dehydrogenase
444656444445Thiolase, N-terminal domain
423632548239Beta-ketoacyl synthase, N-terminal domain
3333113323252Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
111211111111Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
9881088798883Glutamine amidotransferase class-I
12101112101010101110106TCP-1/cpn60 chaperonin family
11ATP synthase A chain
544334445339Glutamine synthetase, catalytic domain
111111111110Triosephosphate isomerase
9111111171914141813137E1-E2 ATPase
15161620191418151918170Core histone H2A/H2B/H3/H4
111321211Copper binding proteins, plastocyanin/azurin family
88976511713983Alpha amylase, catalytic domain
566544667352Phorbol esters/diacylglycerol binding domain (C1 domain)
4557445104553Bacterial transferase hexapeptide (six repeats)
333344333332tRNA synthetases class I (I, L, M and V)
11121218111211122311133Cyclin, N-terminal domain
22191928161733514428277Carboxylesterase family
444544444441DNA polymerase family B
333333333330ATP synthase subunit C
24465366121058Peroxidase
15221164268359Beta-lactamase
345445584547C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
22313130202327323727280Calcineurin-like phosphoesterase
911121639236121613157Cellulase (glycosyl hydrolase family 5)
555655566553tRNA synthetases class II (D, K and N)
36363638383642444035381Mitochondrial carrier protein
15161719221516201713170Aminotransferase class I and II
666734775758Phosphoribosyl transferase domain
12141412121114141311127Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
11Ribosome inactivating protein
111111111110Phosphoglycerate kinase
222222222220Ribosomal protein S4/S9 N-terminal domain
222222222220Ribosomal protein S12/S23
111111211111Chaperonin 10 Kd subunit
16171614121415181618156C2 domain
1819191510720202216166PH domain
667598795668bZIP transcription factor
13121213141421261718160Aldehyde dehydrogenase family
51424863484311310113741687Fungal Zn(2)-Cys(6) binuclear cluster domain
23242423212122232422227Cytochrome b5-like Heme/Steroid binding domain
122312231219Oxidoreductase molybdopterin binding domain
71010137781110790Oxidoreductase NAD-binding domain
21262535282126242725258SNF2 family N-terminal domain
222322232222Ribosomal protein S7p/S5e
20232323242421222321224Ubiquitin-conjugating enzyme
655555567554Isocitrate/isopropylmalate dehydrogenase
222222222220Ribosomal Proteins L2, RNA binding domain
222322222221Hsp90 protein
222222222220Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111111111110Dihydrofolate reductase
1113Chitin recognition protein
622544672543Cysteine-rich secretory protein family
111111111110Ribosomal protein S3, C-terminal domain
112326217Cupin
133631111121Annexin
55Eukaryotic-type carbonic anhydrase
11Chalcone and stilbene synthases, N-terminal domain
3335333333322-oxoacid dehydrogenases acyltransferase (catalytic domain)
144533433232Catalase
111211131113Disintegrin
12111116UDP-glucoronosyl and UDP-glucosyl transferase
556665657556Aminotransferase class-III
222222222220Ribosomal protein S19
111111111110DNA gyrase B
344432534537Thiamine pyrophosphate enzyme, central domain
333533453335Lyase
222322222120Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
111121112112Adenylate and Guanylate cyclase catalytic domain
111111111110ATP synthase delta (OSCP) subunit
111111111110Orotidine 5'-phosphate decarboxylase / HUMPS family
222221221117Indole-3-glycerol phosphate synthase
11Neurohypophysial hormones, N-terminal Domain
222222375229Aromatic amino acid lyase
111111111110Pyruvate kinase, barrel domain
98999910912993Kinesin motor domain
28323037313230322932313DnaJ domain
14141417141414151614146Proteasome subunit
521433446739Major intrinsic protein
112111111111ATP synthase
322322433327Glycosyl hydrolase family 1
1112111111113'5'-cyclic nucleotide phosphodiesterase
111121111111Profilin
211122221115Ribosomal protein L22p/L17e
222322222221Ribosomal protein L14p/L23e
14171624151818131517167Ubiquitin family
555555555550Cofilin/tropomyosin-type actin-binding protein
22232222122014-3-3 protein
522221332527Alkaline phosphatase
11111113111Zinc carboxypeptidase
22222239221939516046342Aldo/keto reductase family
111313158713151413122Myb-like DNA-binding domain
555967776562Forkhead domain
2114Glycosyl hydrolases family 32 N-terminal domain
111122111213Ribosomal protein L16p/L10e
222222222220Ribosomal protein S14p/S29e
333655543845FKBP-type peptidyl-prolyl cis-trans isomerase
11111121110Glutathione peroxidase
1222111212
5661044687662Flavodoxin
11Protamine P1
111111111110Calreticulin family
119182135457424156Common central domain of tyrosinase
8779788771078Aminotransferase class-V
222721222224Ribonucleotide reductase, small chain
43515163814945406056539DEAD/DEAH box helicase
7092891261067185809889906Helicase conserved C-terminal domain
1113Fructose-bisphosphate aldolase class-I
1111111119EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222322212220Ribosomal protein L23
111111112111Pyridoxal-dependent decarboxylase, C-terminal sheet domain
111111111110Ribosomal protein L5
255545366546Pyridoxal-dependent decarboxylase conserved domain
354444343337Citrate synthase, C-terminal domain
544554555547GHMP kinases N terminal domain
766666686764Biotin carboxylase, N-terminal domain
211111131113Tryptophan synthase alpha chain
77777781210779Pyridoxal-phosphate dependent enzyme
14171718161915171317163NUDIX domain
544745556550pfkB family carbohydrate kinase
5338321688662Glycosyl hydrolases family 28
222222222220Ribosomal protein L3
222222222220Ribosomal protein L11, RNA binding domain
87789710881082Histidine phosphatase superfamily (branch 1)
111111111110Thymidylate synthase
639Lipoxygenase
444444444440ATP synthase alpha/beta chain, C terminal domain
544454557447Calponin homology (CH) domain
544522475543Glutamine amidotransferases class-II
222322222221Ribosomal protein S15
255733446342Thaumatin family
111111111110Fructose-1-6-bisphosphatase, N-terminal domain
111221115116Ribonucleotide reductase, all-alpha domain
222222242222Ribosomal protein S2
412222243224SRF-type transcription factor (DNA-binding and dimerisation domain)
1111111513111018278135GATA zinc finger
161314198729242419173Amino acid permease
11Bacterial regulatory proteins, crp family
455566538855Prolyl oligopeptidase family
111322111114Ribosomal protein L30p/L7e
7551055913131183Histidine phosphatase superfamily (branch 2)
111211111111Respiratory-chain NADH dehydrogenase, 30 Kd subunit
444444555443Aconitase family (aconitate hydratase)
466885445353Glycosyl hydrolase family 10
533933222133Glycosyl hydrolases family 17
222222222220Ribosomal protein S5, N-terminal domain
221222222219Nucleoside diphosphate kinase
133245115328Tetraspanin family
1236Galactoside-binding lectin
222222122219Ribosomal protein S10p/S20e
133753239440Arrestin (or S-antigen), N-terminal domain
121111111111Phosphoglucose isomerase
111211111111Carbohydrate phosphorylase
111211111313SecY translocase
11211111110Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222222220Ribosomal protein L6
544554463444Polyprenyl synthetase
222222222220Hexokinase
7445118875665Dynamin family
111111122112Transcription factor TFIID (or TATA-binding protein, TBP)
344333244232Rieske [2Fe-2S] domain
112Phytochrome region
44Proton-conducting membrane transporter
99911998138994Biotin-requiring enzyme
111111111110Phosphofructokinase
222222222220Ribosomal protein S17
111921111119Hydroxymethylglutaryl-coenzyme A reductase
433423333331FGGY family of carbohydrate kinases, N-terminal domain
10789888991086Enoyl-CoA hydratase/isomerase
222322222221Ribosomal protein S9/S16
333223322225Transcription factor TFIIB repeat
5556551068762Cytidine and deoxycytidylate deaminase zinc-binding region
111111111110Molybdopterin oxidoreductase
177868876171498Chromo (CHRromatin Organisation MOdifier) domain
333333333330Phosphatidylinositol-specific phospholipase C, Y domain
333435333434Phosphatidylinositol-specific phospholipase C, X domain
466666667558D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
223332232325Malic enzyme, N-terminal domain
1111111112116-phosphogluconate dehydrogenase, C-terminal domain
14171719191019231111160Multicopper oxidase
11Granulin
10121210991012107101WW domain
222122222219Ribosomal RNA adenine dimethylase
1171241251501271141131241251341,253WD domain, G-beta repeat
322222532427Heavy-metal-associated domain
333333333330Adenylate kinase
122222122218Phosphoglucomutase/phosphomannomutase, C-terminal domain
222122111115Ribosomal protein S8
222222233222Ribosomal protein S11
656769666461LIM domain
333143433330Regulator of chromosome condensation (RCC1) repeat
222222222220Ribosomal protein S13/S18
222222222220chorismate binding enzyme
33332333433060s Acidic ribosomal protein
444544445543Prenyltransferase and squalene oxidase repeat
777755678665Protein kinase C terminal domain
111311111112Single-strand binding protein family
111111111110S-adenosylmethionine synthetase, N-terminal domain
10111115111010101110109Bromodomain
11991098710111094Acyl-CoA dehydrogenase, C-terminal domain
15151518151515152116160Ubiquitin carboxyl-terminal hydrolase
11111117Ribosomal protein L36
3225416Ribonuclease T2 family
11Gonadotropin-releasing hormone
434543534641HSF-type DNA-binding
222222222220SRP54-type protein, GTPase domain
111211111111Urease alpha-subunit, N-terminal domain
1554105416172313112Serine carboxypeptidase
11Apoptosis regulator proteins, Bcl-2 family
8881088879882Phosphatidylinositol 3- and 4-kinase
222422432225Transketolase, thiamine diphosphate binding domain
67613315243Glycosyl hydrolases family 11
11111117WHEP-TRS domain
322322422224Inositol monophosphatase family
545444554545Glutaredoxin
533422385742Isocitrate lyase family
111111221112Serine hydroxymethyltransferase
222222724227Iron-containing alcohol dehydrogenase
211222122217Ribosomal protein L10
544433555543KOW motif
111111111110Ribosomal protein L34
112Ribosomal protein L33
133533222327RF-1 domain
11111413316Sodium:solute symporter family
111111121111Imidazoleglycerol-phosphate dehydratase
111211111111DNA polymerase family A
111111111110IMP dehydrogenase / GMP reductase domain
111111112111Glucose-6-phosphate dehydrogenase, NAD binding domain
6881097101016993Protein phosphatase 2C
111332322321Nucleotidyl transferase
577786343858Carbonic anhydrase
111111111110Phosphoribulokinase / Uridine kinase family
98810101015101311104Fatty acid desaturase
666766666661MutS domain V
111111111110Delta-aminolevulinic acid dehydratase
222211644529Arginase family
666666666660MCM P-loop domain
111122111213Squalene/phytoene synthase
98881010117161097FHA domain
112NADH-ubiquinone/plastoquinone oxidoreductase chain 6
26303126232846544334341AMP-binding enzyme
13161619182015262914186G-protein alpha subunit
16262624212021242117216HMG (high mobility group) box
11Cytochrome c oxidase subunit III
544654776553His Kinase A (phospho-acceptor) domain
222522325227Armadillo/beta-catenin-like repeat
27292840171131313019263Tetratricopeptide repeat
433443433233Ion transport protein
121111111111DNA gyrase/topoisomerase IV, subunit A
91012147511101211101BRCA1 C Terminus (BRCT) domain
666664678661Glycosyl transferases group 1
444733444340Glycosyl transferase family 2
13312222218SAM domain (Sterile alpha motif)
144532435334linker histone H1 and H5 family
111111111110Ribosomal protein L7/L12 C-terminal domain
1111123818Pectate lyase
11213614ribonuclease
111211111111Urease, gamma subunit
333433334332CoA-ligase
46665412128669Phosphopantetheine attachment site
222222321321Formyl transferase
9991013119121010102Metallopeptidase family M24
141515131112161216115Leucine Rich Repeat
313435576749625346380alpha/beta hydrolase fold
333333332329RNA polymerase Rpb2, domain 6
455555564448PB1 domain
222322222221Staphylococcal nuclease homologue
10991112121111109104Rab-GTPase-TBC domain
111111111110Tudor domain
111122111213WH1 domain
244483553341Zinc finger, ZZ type
111111118HRDC domain
9111197710910790CBS domain
222322222221Ribosomal protein L13
222222222220Ribosomal protein L4/L1 family
111111111110Clp protease
465544334341S1 RNA binding domain
111111211111HIUase/Transthyretin family
344444755545AhpC/TSA family
444544444441tRNA synthetases class I (W and Y)
111221111112UvrD/REP helicase N-terminal domain
445411106104462Rhodanese-like domain
222222222220Universal stress protein family
23283047222227363827300Acetyltransferase (GNAT) family
111111111110SecE/Sec61-gamma subunits of protein translocation complex
111111111110C-terminal regulatory domain of Threonine dehydratase
222322222221AIR synthase related protein, N-terminal domain
677655666660tRNA synthetase class II core domain (G, H, P, S and T)
112Phage integrase family
222332332224Tetrapyrrole (Corrin/Porphyrin) Methylases
111111121111Glycosyl transferase family, a/b domain
122223354125Class II Aldolase and Adducin N-terminal domain
422443444334Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
555766665556Fes/CIP4, and EFC/F-BAR homology domain
344722345539IQ calmodulin-binding motif
222222222220Phosphoinositide 3-kinase family, accessory domain (PIK domain)
3333334325Phospholipase D Active site motif
111133111215Regulator of G protein signaling domain
444444444541GTPase-activator protein for Ras-like GTPase
710111087677982RasGEF domain
79101067777878RasGEF N-terminal motif
13121114111311141312124RhoGAP domain
14141416171515201413152RhoGEF domain
444444444440SPRY domain
333833333537RNA polymerase Rpb1, domain 2
111111111110Guanylate kinase
344443445338Gelsolin repeat
911101076899887UBA/TS-N domain
17181819161516192014172PHD-finger
22222111215GGL domain
555755555552HECT-domain (ubiquitin-transferase)
321211221318Helix-hairpin-helix motif
134111121318MSP (Major sperm protein) domain
966633875760Ribonuclease III domain
222344222225Region in Clathrin and VPS
333343334332RanBP1 domain
222211223219PPIC-type PPIASE domain
243331334127Zn-finger in Ran binding protein and others
2122203712929252521221Zinc finger C-x8-C-x5-C-x3-H type (and similar)
111121119B-box zinc finger
3577894