PFAM Domains • Ramaria rubella (R. acris) UT-36052-T v1.0
Annotations/GenomesAurde1Boled1Cersu1Cryne_H99_1Dacsp1Jaaar1Ramac1Schco3Walse1TotalAnnotation Description
PFAMs
7,9317,6365,7326,8958,6368,4538,5904,82458,697
117 transmembrane receptor (rhodopsin family)
3845314149394331317ATPase family associated with various cellular activities (AAA)
3148344144474624315ABC transporter
4444644434ATP synthase alpha/beta family, nucleotide-binding domain
12115EGF-like domain
1414131615161515118Elongation factor Tu GTP binding domain
121091012913782Helix-loop-helix DNA-binding domain
1354759851Hsp20/alpha crystallin family
788911107767Hsp70 protein
7888999866KH domain
111111118SH2 domain
2625222227262720195SH3 domain
1011109111311984Actin
6638182029246014269Ankyrin repeat
11PAN domain
116879117766ADP-ribosylation factor family
42418284329262219Eukaryotic aspartyl protease
3332333222Cyclic nucleotide-binding domain
11Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
1311111110Cytochrome c
8102324713168Double-stranded RNA binding motif
1717161520182014137EF hand
112111184Fe-4S binding domain
111111118Fibronectin type III domain
13116Globin
20198151125155118Glutathione S-transferase, C-terminal domain
1121221111Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
11Hemopexin
14767111311271Homeodomain
112Laminin EGF domain
2222222216lactate/malate dehydrogenase, NAD binding domain
27544656663Myosin head (motor domain)
12620751181131481145836Cytochrome P450
17118989120303155162781,267Protein kinase domain
141311141419117103Pyridine nucleotide-disulphide oxidoreductase
2619232725252721193Ras family
6101011171112784Response regulator receiver domain
3119110934RNase H
6759625769717060515RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
11Reverse transcriptase (RNA-dependent DNA polymerase)
111115Copper/zinc superoxide dismutase (SODC)
4412323221Iron/manganese superoxide dismutases, alpha-hairpin domain
2933233530Subtilase family
3537627633454113342Sugar (and other) transporter
107810111213980Thioredoxin
7445545539Tubulin/FtsZ family, GTPase domain
642633125von Willebrand factor type A domain
73532433807210027462Zinc finger, C2H2 type
6160324263567124409Zinc finger, C3HC4 type (RING finger)
3211102623228132Zinc knuckle
2222222216Protein-tyrosine phosphatase
638335115988711233626short chain dehydrogenase
3156254648474715315Zinc-binding dehydrogenase
4535444231Thiolase, N-terminal domain
34124103128Beta-ketoacyl synthase, N-terminal domain
32333334242Fe-2S iron-sulfur cluster binding domain
1222221113Enolase, C-terminal TIM barrel domain
7777788859Glutamine amidotransferase class-I
15101010101110985TCP-1/cpn60 chaperonin family
3223333221Glutamine synthetase, catalytic domain
111111118Triosephosphate isomerase
1416101014119993E1-E2 ATPase
161481222202219133Core histone H2A/H2B/H3/H4
325Copper binding proteins, plastocyanin/azurin family
66910881259Alpha amylase, catalytic domain
5635675138Phorbol esters/diacylglycerol binding domain (C1 domain)
3397544742Bacterial transferase hexapeptide (six repeats)
7333333328tRNA synthetases class I (I, L, M and V)
10139111111131088Cyclin, N-terminal domain
22334221125262145Carboxylesterase family
2444474433DNA polymerase family B
5354333329ATP synthase subunit C
11Legume lectin domain
117212142140Peroxidase
6312910343Beta-lactamase
43344624C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
3226193130312416209Calcineurin-like phosphoesterase
10951124116581Cellulase (glycosyl hydrolase family 5)
5665766546tRNA synthetases class II (D, K and N)
3536343638403730286Mitochondrial carrier protein
1616161618181611127Aminotransferase class I and II
7677757753Phosphoribosyl transferase domain
1515131816141410115Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
111111118Phosphoglycerate kinase
2222222216Ribosomal protein S4/S9 N-terminal domain
2222222216Ribosomal protein S12/S23
11111117Chaperonin 10 Kd subunit
131212919211810114C2 domain
1916161819191920146PH domain
5675656646bZIP transcription factor
172414112032168142Aldehyde dehydrogenase family
5970774870678834513Fungal Zn(2)-Cys(6) binuclear cluster domain
2925191921182516172Cytochrome b5-like Heme/Steroid binding domain
2413111Oxidoreductase molybdopterin binding domain
712711101011775Oxidoreductase NAD-binding domain
2426212122282214178SNF2 family N-terminal domain
2222222216Ribosomal protein S7p/S5e
2218192022222116160Ubiquitin-conjugating enzyme
5577675547Isocitrate/isopropylmalate dehydrogenase
2222222216Ribosomal Proteins L2, RNA binding domain
2322223117Hsp90 protein
2222222216Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111111118Dihydrofolate reductase
11Chitin recognition protein
22132515Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
912315Cupin
112Annexin
33333933302-oxoacid dehydrogenases acyltransferase (catalytic domain)
2343232120Catalase
12111118Disintegrin
1512181138UDP-glucoronosyl and UDP-glucosyl transferase
5585655847Aminotransferase class-III
2121222214Ribosomal protein S19
111112119DNA gyrase B
4322434224Thiamine pyrophosphate enzyme, central domain
4333433326Lyase
1122212213Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
111111118Adenylate and Guanylate cyclase catalytic domain
111111118ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
1111312111Indole-3-glycerol phosphate synthase
1214210Aromatic amino acid lyase
111112119Pyruvate kinase, barrel domain
9910991110875Kinesin motor domain
2922232735303026222DnaJ domain
1412141414151414111Proteasome subunit
3815643333Major intrinsic protein
111111118ATP synthase
631323119Glycosyl hydrolase family 1
1111111183'5'-cyclic nucleotide phosphodiesterase
211111119Profilin
2212211112Ribosomal protein L22p/L17e
2222222216Ribosomal protein L14p/L23e
2515121118161310120Ubiquitin family
6556557443Cofilin/tropomyosin-type actin-binding protein
2211218212914-3-3 protein
33123214Alkaline phosphatase
211127Zinc carboxypeptidase
3058215749526017344Aldo/keto reductase family
1310712141511890Myb-like DNA-binding domain
656259841Forkhead domain
11226Glycosyl hydrolases family 32 N-terminal domain
111111118Ribosomal protein L16p/L10e
2122222215Ribosomal protein S14p/S29e
3336355331FKBP-type peptidyl-prolyl cis-trans isomerase
1121121110Glutathione peroxidase
1212122213
7959677454Flavodoxin
11Protamine P1
11Tropomyosin
111111118Calreticulin family
343321420Common central domain of tyrosinase
5556879550Aminotransferase class-V
4221313117Ribonucleotide reductase, small chain
5853413951526634394DEAD/DEAH box helicase
9788716892869756655Helicase conserved C-terminal domain
112116Fructose-bisphosphate aldolase class-I
111111118EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
2222222115Ribosomal protein L23
111112119Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1121111210Ribosomal protein L5
4435467336Pyridoxal-dependent decarboxylase conserved domain
3413343122Citrate synthase, C-terminal domain
5554565540GHMP kinases N terminal domain
7766755447Biotin carboxylase, N-terminal domain
111111118Tryptophan synthase alpha chain
9889988766Pyridoxal-phosphate dependent enzyme
129911171514996NUDIX domain
4462456435pfkB family carbohydrate kinase
461679336Glycosyl hydrolases family 28
2222223217Ribosomal protein L3
2221232216Ribosomal protein L11, RNA binding domain
989910109872Histidine phosphatase superfamily (branch 1)
111111118Thymidylate synthase
4444444432ATP synthase alpha/beta chain, C terminal domain
5435565437Calponin homology (CH) domain
5545595341Glutamine amidotransferases class-II
2222222216Ribosomal protein S15
2326331130Thaumatin family
111111118Fructose-1-6-bisphosphatase, N-terminal domain
1111131110Ribonucleotide reductase, all-alpha domain
2322222217Ribosomal protein S2
2222324219SRF-type transcription factor (DNA-binding and dimerisation domain)
8101214101112784GATA zinc finger
232516192219219154Amino acid permease
94487157357Prolyl oligopeptidase family
111112119Ribosomal protein L30p/L7e
1295101289469Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
4455464436Aconitase family (aconitate hydratase)
26354525Glycosyl hydrolase family 10
11121129Glycosyl hydrolases family 17
2222222216Ribosomal protein S5, N-terminal domain
1222232216Nucleoside diphosphate kinase
112116Tetraspanin family
222112212Ribosomal protein S10p/S20e
5123655128Arrestin (or S-antigen), N-terminal domain
2111211110Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
111111118SecY translocase
111111219Respiratory-chain NADH dehydrogenase, 49 Kd subunit
2122222215Ribosomal protein L6
5533446333Polyprenyl synthetase
2222222216Hexokinase
6734979348Dynamin family
1211311111Transcription factor TFIID (or TATA-binding protein, TBP)
2434542125Rieske [2Fe-2S] domain
11Bacterial regulatory proteins, lacI family
123Phytochrome region
11Proton-conducting membrane transporter
7888979561Biotin-requiring enzyme
2111121110Phosphofructokinase
2221222215Ribosomal protein S17
111111118Hydroxymethylglutaryl-coenzyme A reductase
2333343223FGGY family of carbohydrate kinases, N-terminal domain
76568119456Enoyl-CoA hydratase/isomerase
2222242218Ribosomal protein S9/S16
3222232218Transcription factor TFIIB repeat
85106896557Cytidine and deoxycytidylate deaminase zinc-binding region
21111118Molybdopterin oxidoreductase
1078891029384Chromo (CHRromatin Organisation MOdifier) domain
1112234216Phosphatidylinositol-specific phospholipase C, Y domain
1122233216Phosphatidylinositol-specific phospholipase C, X domain
56910667453D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
2331233219Malic enzyme, N-terminal domain
12112121116-phosphogluconate dehydrogenase, C-terminal domain
109553176257Multicopper oxidase
1187101499573WW domain
1111222212Ribosomal RNA adenine dimethylase
290178102111156169132941,232WD domain, G-beta repeat
4513344327Heavy-metal-associated domain
4233333324Adenylate kinase
2112121212Phosphoglucomutase/phosphomannomutase, C-terminal domain
1211111210Ribosomal protein S8
1211221212Ribosomal protein S11
6646566241LIM domain
11Matrixin
2413423120Regulator of chromosome condensation (RCC1) repeat
2122222215Ribosomal protein S13/S18
11NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
2222222216chorismate binding enzyme
333332332360s Acidic ribosomal protein
5444474436Prenyltransferase and squalene oxidase repeat
9544767648Protein kinase C terminal domain
111111118Single-strand binding protein family
111111118S-adenosylmethionine synthetase, N-terminal domain
1481011111011883Bromodomain
78771099360Acyl-CoA dehydrogenase, C-terminal domain
1413141417161712117Ubiquitin carboxyl-terminal hydrolase
11111117Ribosomal protein L36
222321113Ribonuclease T2 family
6245434432HSF-type DNA-binding
2222222216SRP54-type protein, GTPase domain
111111219Urease alpha-subunit, N-terminal domain
1614712171710295Serine carboxypeptidase
22Apoptosis regulator proteins, Bcl-2 family
88889118666Phosphatidylinositol 3- and 4-kinase
2251223219Transketolase, thiamine diphosphate binding domain
112Glycosyl hydrolases family 11
11114WHEP-TRS domain
4232227123Inositol monophosphatase family
5344455333Glutaredoxin
3412433121Isocitrate lyase family
111111118Serine hydroxymethyltransferase
2314544225Iron-containing alcohol dehydrogenase
2222222216Ribosomal protein L10
2344555432KOW motif
11111117Ribosomal protein L34
11Ribosomal protein L33
3432233323RF-1 domain
3214521220Sodium:solute symporter family
211111119Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
111111118IMP dehydrogenase / GMP reductase domain
111111219Glucose-6-phosphate dehydrogenase, NAD binding domain
745810713559Protein phosphatase 2C
2223321217Nucleotidyl transferase
242432118Carbonic anhydrase
111111118Phosphoribulokinase / Uridine kinase family
13104511913469Fatty acid desaturase
6666666547MutS domain V
111111118Delta-aminolevulinic acid dehydratase
3434454229Arginase family
6866666650MCM P-loop domain
1112141112Squalene/phytoene synthase
1111761199670FHA domain
2535929251103110274AMP-binding enzyme
181335192015396G-protein alpha subunit
20147101717357127HMG (high mobility group) box
112NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
11Cytochrome c oxidase subunit III
15771499355His Kinase A (phospho-acceptor) domain
3323454327Armadillo/beta-catenin-like repeat
4631223241362720255Tetratricopeptide repeat
7334323126Ion transport protein
111112119DNA gyrase/topoisomerase IV, subunit A
11VPR/VPX protein
1212710101010778BRCA1 C Terminus (BRCT) domain
7677877453Glycosyl transferases group 1
3323444124Glycosyl transferase family 2
1112139SAM domain (Sterile alpha motif)
3123433120linker histone H1 and H5 family
11111117Ribosomal protein L7/L12 C-terminal domain
145Pectate lyase
527ribonuclease
111111219Urease, gamma subunit
3334333325CoA-ligase
782465016396Phosphopantetheine attachment site
4232222320Formyl transferase
11delta endotoxin
10101010101011677Metallopeptidase family M24
1715171222151611125Leucine Rich Repeat
293593332515118258alpha/beta hydrolase fold
3333333324RNA polymerase Rpb2, domain 6
5335545535PB1 domain
2222222216Staphylococcal nuclease homologue
11999101011675Rab-GTPase-TBC domain
111111118Tudor domain
2211211111WH1 domain
3435943334Zinc finger, ZZ type
12112119HRDC domain
910710999871CBS domain
2222222216Ribosomal protein L13
2222232217Ribosomal protein L4/L1 family
11111117Clp protease
4433554331S1 RNA binding domain
111111118HIUase/Transthyretin family
4635468238AhpC/TSA family
9334454436tRNA synthetases class I (W and Y)
21115UvrD/REP helicase N-terminal domain
4445344432Rhodanese-like domain
1222222518Universal stress protein family
3028182936273012210Acetyltransferase (GNAT) family
111111118SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
2222222216AIR synthase related protein, N-terminal domain
6666676649tRNA synthetase class II core domain (G, H, P, S and T)
112Phage integrase family
2222322217Tetrapyrrole (Corrin/Porphyrin) Methylases
111111219Glycosyl transferase family, a/b domain
1222262421Class II Aldolase and Adducin N-terminal domain
3311344120Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
5555546338Fes/CIP4, and EFC/F-BAR homology domain
4373434331IQ calmodulin-binding motif
2222232217Phosphoinositide 3-kinase family, accessory domain (PIK domain)
4644453232Phospholipase D Active site motif
121111119Regulator of G protein signaling domain
4333464330GTPase-activator protein for Ras-like GTPase
67348116550RasGEF domain
77369106553RasGEF N-terminal motif
1212913131213791RhoGAP domain
14121491214131199RhoGEF domain
4332444327SPRY domain
3333343325RNA polymerase Rpb1, domain 2
111111118Guanylate kinase
3332453225Gelsolin repeat
97851169964UBA/TS-N domain
181915141715159122PHD-finger
1211128GGL domain
5446756441HECT-domain (ubiquitin-transferase)
4121122114Helix-hairpin-helix motif
1213212113MSP (Major sperm protein) domain
7959976355Ribonuclease III domain
2222222216Region in Clathrin and VPS
3132334322RanBP1 domain
2212222215PPIC-type PPIASE domain
421133418Zn-finger in Ran binding protein and others
2121191232192810162Zinc finger C-x8-C-x5-C-x3-H type (and similar)
11114B-box zinc finger
4321021031Poly(ADP-ribose) polymerase catalytic domain
2312232116Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
999520472125826422817F-box domain
111111118Elongation factor 1 gamma, conserved domain
11522112Calpain family cysteine protease
2312323117Copper fist DNA binding domain
6654675443CRAL/TRIO domain
15245115412211143BTB/POZ domain
51051159137Ricin-type beta-trefoil lectin domain
111112119Inhibitor of Apoptosis domain
2322333321Voltage gated chloride channel
131323191011273Caspase domain
7536711847GDSL-like Lipase/Acylhydrolase
111111219Poly-adenylate binding protein, unique domain
111111118POLO box duplicated region
11NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
1129152418272411159ABC transporter transmembrane region
11114Integrase core domain
3738363336FAD binding domain
24407154Condensation domain
111111118S-adenosyl-L-homocysteine hydrolase, NAD binding domain
111112119HAMP domain
2222222216ribosomal L5P family C-terminus
6655555542Insulinase (Peptidase family M16)
5435544333Dehydrogenase E1 component
111111118Lumazine binding domain
6657677650Elongation factor G C-terminus
4345464333HMGL-like
4344444330DnaJ central domain
4133112Starch binding domain
2122222316Ribosomal protein L1p/L10e family
5945754342Cation transporting ATPase, C-terminus
7966865451Cation transporter/ATPase, N-terminus
11021111118dUTPase
3455464435Aconitase C-terminal domain
3333333324Amino acid kinase family
111121119N-(5'phosphoribosyl)anthranilate (PRA) isomerase
4412494129Acyl transferase domain
111111219Urease beta subunit
2343232221Dihydrodipicolinate synthetase family
2630262732293019219haloacid dehalogenase-like hydrolase
123223215Glycosyl hydrolases family 2
1211348714261Glycosyl hydrolases family 18
111121119Proliferating cell nuclear antigen, N-terminal domain
11114Acylphosphatase
211111119Adenylosuccinate synthetase
111111129Asparaginase, N-terminal
2124332219Peptidase S24-like
111111118Inorganic pyrophosphatase
36126115135Glycosyl hydrolases family 16
1322233117Glycosyl hydrolases family 15
13135620822592NADH:flavin oxidoreductase / NADH oxidase family
1121111193-hydroxyacyl-CoA dehydrogenase, C-terminal domain
4313245123Glycosyl hydrolase family 20, catalytic domain
5635655338HhH-GPD superfamily base excision DNA repair protein
111111118AIR carboxylase
14222101936236132GMC oxidoreductase
2222272221Asparagine synthase
11612417564Fungal cellulose binding domain
6654677546Septin
111111118EF-1 guanine nucleotide exchange domain
111112119Homoserine dehydrogenase
33252