PFAM Domains • Clathrospora elynae CBS 161.51 v1.0
Annotations/GenomesAltbr1Clael1CocheC5_3Cucbe1Pyrtr1Settu1TotalAnnotation Description
PFAMs
5,9038,3519,2958,8066,7138,66147,729
1127 transmembrane receptor (rhodopsin family)
324341483939242ATPase family associated with various cellular activities (AAA)
374542424039245ABC transporter
44444424ATP synthase alpha/beta family, nucleotide-binding domain
13151414121482Elongation factor Tu GTP binding domain
11111312111472Helix-loop-helix DNA-binding domain
13341315Hsp20/alpha crystallin family
68887744Hsp70 protein
89889850KH domain
11Ribulose bisphosphate carboxylase large chain, catalytic domain
1111116SH2 domain
212122242423135SH3 domain
910101071056Actin
357188545853359Ankyrin repeat
43832323PAN domain
77787743ADP-ribosylation factor family
872211121272Eukaryotic aspartyl protease
24444422Cyclic nucleotide-binding domain
22Cytochrome b(C-terminal)/b6/petD
22Cytochrome b/b6/petB
1111116Cytochrome c
2111229Double-stranded RNA binding motif
181618171917105EF hand
21111174Fe-4S binding domain
22433216Fibronectin type III domain
1111116Globin
10149136860Glutathione S-transferase, C-terminal domain
1111116Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
58899847Homeodomain
44453424lactate/malate dehydrogenase, NAD binding domain
64545428Myosin head (motor domain)
63981569487133631Cytochrome P450
84112115175104106696Protein kinase domain
9151719121587Pyridine nucleotide-disulphide oxidoreductase
222326252225143Ras family
212527232425145Response regulator receiver domain
24104525RNase H
495758645858344RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
347Reverse transcriptase (RNA-dependent DNA polymerase)
13232213Copper/zinc superoxide dismutase (SODC)
22222212Iron/manganese superoxide dismutases, alpha-hairpin domain
7712891255Subtilase family
747070758864441Sugar (and other) transporter
109131191264Thioredoxin
52222316Trypsin
44444424Tubulin/FtsZ family, GTPase domain
13533419von Willebrand factor type A domain
565968737061387Zinc finger, C2H2 type
356054694351312Zinc finger, C3HC4 type (RING finger)
167126231276Zinc knuckle
22222212Protein-tyrosine phosphatase
98122132135113131731short chain dehydrogenase
525969636068371Zinc-binding dehydrogenase
96767641Thiolase, N-terminal domain
101528152331122Beta-ketoacyl synthase, N-terminal domain
466666342Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
1111116Enolase, C-terminal TIM barrel domain
112Cytochrome C and Quinol oxidase polypeptide I
77896946Glutamine amidotransferase class-I
10101010101060TCP-1/cpn60 chaperonin family
33333318Glutamine synthetase, catalytic domain
22222212Triosephosphate isomerase
13131914161792E1-E2 ATPase
51011731973Core histone H2A/H2B/H3/H4
11Copper binding proteins, plastocyanin/azurin family
64666634Alpha amylase, catalytic domain
22122110Phorbol esters/diacylglycerol binding domain (C1 domain)
67878945Bacterial transferase hexapeptide (six repeats)
74338429tRNA synthetases class I (I, L, M and V)
57978945Cyclin, N-terminal domain
242029232223141Carboxylesterase family
44444424DNA polymerase family B
34444423ATP synthase subunit C
11Legume lectin domain
76857740Peroxidase
887117546Beta-lactamase
24233317C-5 cytosine-specific DNA methylase
232528302627159Calcineurin-like phosphoesterase
1089116751Cellulase (glycosyl hydrolase family 5)
77777742tRNA synthetases class II (D, K and N)
364041384040235Mitochondrial carrier protein
11recA bacterial DNA recombination protein
715171791681Aminotransferase class I and II
6108991052Phosphoribosyl transferase domain
11121312121272Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111116Phosphoglycerate kinase
22222212Ribosomal protein S4/S9 N-terminal domain
22222111Ribosomal protein S12/S23
211116Bacterial regulatory helix-turn-helix proteins, AraC family
1111116Chaperonin 10 Kd subunit
11131214111172C2 domain
162222201819117PH domain
699118851bZIP transcription factor
201827232119128Aldehyde dehydrogenase family
7915819219892160879Fungal Zn(2)-Cys(6) binuclear cluster domain
182224212226133Cytochrome b5-like Heme/Steroid binding domain
33443320Oxidoreductase molybdopterin binding domain
9141812101679Oxidoreductase NAD-binding domain
212425252624145SNF2 family N-terminal domain
22222212Ribosomal protein S7p/S5e
212322262125138Ubiquitin-conjugating enzyme
77767640Isocitrate/isopropylmalate dehydrogenase
22222212Ribosomal Proteins L2, RNA binding domain
1111116Hsp90 protein
12222211Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111116Dihydrofolate reductase
91110116552Chitin recognition protein
34132215Cysteine-rich secretory protein family
2111117Ribosomal protein S3, C-terminal domain
37456631Cupin
12222211Annexin
1212118Eukaryotic-type carbonic anhydrase
111115Chalcone and stilbene synthases, N-terminal domain
234333182-oxoacid dehydrogenases acyltransferase (catalytic domain)
42435422Catalase
1111116Disintegrin
11UDP-glucoronosyl and UDP-glucosyl transferase
651078844Aminotransferase class-III
12222211Ribosomal protein S19
1111116DNA gyrase B
45663428Thiamine pyrophosphate enzyme, central domain
44444424Lyase
12222211Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11113310Sodium:neurotransmitter symporter family
111115Adenylate and Guanylate cyclase catalytic domain
111115ATP synthase delta (OSCP) subunit
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
1111116Indole-3-glycerol phosphate synthase
11Neurohypophysial hormones, N-terminal Domain
112Aromatic amino acid lyase
1111116Pyruvate kinase, barrel domain
109111010959Kinesin motor domain
303429353231191DnaJ domain
12141414141482Proteasome subunit
78777844Major intrinsic protein
1111116ATP synthase
21333315Glycosyl hydrolase family 1
1111153'5'-cyclic nucleotide phosphodiesterase
1121117Profilin
2111117Ribosomal protein L22p/L17e
22222212Ribosomal protein L14p/L23e
10111112111166Ubiquitin family
25552524Cofilin/tropomyosin-type actin-binding protein
3222221314-3-3 protein
56664633Alkaline phosphatase
107897849Zinc carboxypeptidase
222825302127153Aldo/keto reductase family
11141513141683Myb-like DNA-binding domain
24444422Forkhead domain
21323314Glycosyl hydrolases family 32 N-terminal domain
1111116Ribosomal protein L16p/L10e
12321312Ribosomal protein S14p/S29e
55555530FKBP-type peptidyl-prolyl cis-trans isomerase
1111116Glutathione peroxidase
1112117
67967843Flavodoxin
1124Protamine P1
111115Calreticulin family
89121061055Common central domain of tyrosinase
37873937Aminotransferase class-V
1111116Ribonucleotide reductase, small chain
444239405242259DEAD/DEAH box helicase
657777767773445Helicase conserved C-terminal domain
1111116EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22222212Ribosomal protein L23
112116Pyridoxal-dependent decarboxylase, C-terminal sheet domain
22222212Ribosomal protein L5
66666636Pyridoxal-dependent decarboxylase conserved domain
22322213Citrate synthase, C-terminal domain
55555530GHMP kinases N terminal domain
77766740Biotin carboxylase, N-terminal domain
1111116Tryptophan synthase alpha chain
810149101162Pyridoxal-phosphate dependent enzyme
11141615141585NUDIX domain
59565535pfkB family carbohydrate kinase
64576634Glycosyl hydrolases family 28
11114Luciferase-like monooxygenase
32222213Ribosomal protein L3
12221210Ribosomal protein L11, RNA binding domain
10141513101274Histidine phosphatase superfamily (branch 1)
1111116Thymidylate synthase
134Lipoxygenase
44444424ATP synthase alpha/beta chain, C terminal domain
55554529Calponin homology (CH) domain
64765533Glutamine amidotransferases class-II
13322213Ribosomal protein S15
11'Cold-shock' DNA-binding domain
1111116Thaumatin family
22222212Fructose-1-6-bisphosphatase, N-terminal domain
1111116Ribonucleotide reductase, all-alpha domain
22322213Ribosomal protein S2
22222212SRF-type transcription factor (DNA-binding and dimerisation domain)
56765534GATA zinc finger
223039383232193Amino acid permease
25852628Prolyl oligopeptidase family
22332315Ribosomal protein L30p/L7e
6121212101264Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
44444424Aconitase family (aconitate hydratase)
56554530Glycosyl hydrolase family 10
14242316Glycosyl hydrolases family 17
22221211Ribosomal protein S5, N-terminal domain
1111116Nucleoside diphosphate kinase
1113Tetraspanin family
2111218Ribosomal protein S10p/S20e
35444626Arrestin (or S-antigen), N-terminal domain
1111116Phosphoglucose isomerase
1111116Carbohydrate phosphorylase
1111116SecY translocase
1111116Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222212Ribosomal protein L6
55845330Polyprenyl synthetase
54455427Hexokinase
4107891149Dynamin family
1111116Transcription factor TFIID (or TATA-binding protein, TBP)
48585535Rieske [2Fe-2S] domain
718Proton-conducting membrane transporter
691189952Biotin-requiring enzyme
1111116Phosphofructokinase
21222211Ribosomal protein S17
1111127Hydroxymethylglutaryl-coenzyme A reductase
33333318FGGY family of carbohydrate kinases, N-terminal domain
111115Sodium:dicarboxylate symporter family
89121291060Enoyl-CoA hydratase/isomerase
22222212Ribosomal protein S9/S16
22222212Transcription factor TFIIB repeat
56676636Cytidine and deoxycytidylate deaminase zinc-binding region
2111117Molybdopterin oxidoreductase
485721036Chromo (CHRromatin Organisation MOdifier) domain
23333317Phosphatidylinositol-specific phospholipase C, Y domain
33344320Phosphatidylinositol-specific phospholipase C, X domain
9119971055D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
12222211Malic enzyme, N-terminal domain
122212106-phosphogluconate dehydrogenase, C-terminal domain
581289850Multicopper oxidase
9101111101162WW domain
1111116Ribosomal RNA adenine dimethylase
122229Yeast PIR protein repeat
97126127102103117672WD domain, G-beta repeat
64444426Heavy-metal-associated domain
11Transferrin
43454323Adenylate kinase
32223214Phosphoglucomutase/phosphomannomutase, C-terminal domain
22221110Ribosomal protein S8
1112117Ribosomal protein S11
34444423LIM domain
1113Matrixin
12122210Regulator of chromosome condensation (RCC1) repeat
32222213Ribosomal protein S13/S18
22NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
22222212chorismate binding enzyme
4444342360s Acidic ribosomal protein
44444424Prenyltransferase and squalene oxidase repeat
55665532Protein kinase C terminal domain
1111116Single-strand binding protein family
1111116S-adenosylmethionine synthetase, N-terminal domain
677107845Bromodomain
14121514121481Acyl-CoA dehydrogenase, C-terminal domain
15141415171489Ubiquitin carboxyl-terminal hydrolase
111115Ribosomal protein L36
22322213Ribonuclease T2 family
23433318HSF-type DNA-binding
22222212SRP54-type protein, GTPase domain
1111116Urease alpha-subunit, N-terminal domain
910138101161Serine carboxypeptidase
78887846Phosphatidylinositol 3- and 4-kinase
22222212Transketolase, thiamine diphosphate binding domain
45533525Glycosyl hydrolases family 11
55554529Inositol monophosphatase family
14442419Glutaredoxin
24342318Isocitrate lyase family
23222213Serine hydroxymethyltransferase
34644425Iron-containing alcohol dehydrogenase
12222211Ribosomal protein L10
53336323KOW motif
11114Ribosomal protein L34
112Negative factor, (F-Protein) or Nef
12222211RF-1 domain
13333316Sodium:solute symporter family
1111116Imidazoleglycerol-phosphate dehydratase
1111116DNA polymerase family A
1111116IMP dehydrogenase / GMP reductase domain
1111116Glucose-6-phosphate dehydrogenase, NAD binding domain
67877742Protein phosphatase 2C
23333317Nucleotidyl transferase
13223213Carbonic anhydrase
2111117Phosphoribulokinase / Uridine kinase family
66786740Fatty acid desaturase
66666636MutS domain V
11Interleukin-6/G-CSF/MGF family
1111116Delta-aminolevulinic acid dehydratase
44545426Arginase family
66766637MCM P-loop domain
22222212Squalene/phytoene synthase
710889850FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
345157425054288AMP-binding enzyme
34444423G-protein alpha subunit
78799747HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
162222202321124His Kinase A (phospho-acceptor) domain
13333316Armadillo/beta-catenin-like repeat
232931272827165Tetratricopeptide repeat
23233215Ion transport protein
1111116DNA gyrase/topoisomerase IV, subunit A
10111111111165BRCA1 C Terminus (BRCT) domain
36677635Glycosyl transferases group 1
43538326Glycosyl transferase family 2
63335222SAM domain (Sterile alpha motif)
1111116linker histone H1 and H5 family
121116Ribosomal protein L7/L12 C-terminal domain
73562427Pectate lyase
1121117ribonuclease
111115Urease, gamma subunit
34544424CoA-ligase
82129162531130Phosphopantetheine attachment site
33333318Formyl transferase
59997948Metallopeptidase family M24
13151814151590Leucine Rich Repeat
224642462138215alpha/beta hydrolase fold
33333318RNA polymerase Rpb2, domain 6
33333419PB1 domain
22222212Staphylococcal nuclease homologue
12121212101270Rab-GTPase-TBC domain
1111116Tudor domain
1111127WH1 domain
33343319Zinc finger, ZZ type
34332318HRDC domain
88889849CBS domain
22222212Ribosomal protein L13
22222212Ribosomal protein L4/L1 family
1111116Clp protease
23433318S1 RNA binding domain
11114HIUase/Transthyretin family
66667435AhpC/TSA family
45454426tRNA synthetases class I (W and Y)
1111127UvrD/REP helicase N-terminal domain
45443424Rhodanese-like domain
12222211Universal stress protein family
214345463235222Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
1111116C-terminal regulatory domain of Threonine dehydratase
22322213AIR synthase related protein, N-terminal domain
88999851tRNA synthetase class II core domain (G, H, P, S and T)
22222212SpoU rRNA Methylase family
112Phage integrase family
22222212Tetrapyrrole (Corrin/Porphyrin) Methylases
1111116Glycosyl transferase family, a/b domain
1111239PDZ domain
58875740Class II Aldolase and Adducin N-terminal domain
44444424Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
55555530Fes/CIP4, and EFC/F-BAR homology domain
65666534IQ calmodulin-binding motif
22222212Phosphoinositide 3-kinase family, accessory domain (PIK domain)
54655530Phospholipase D Active site motif
1111116Regulator of G protein signaling domain
23333317GTPase-activator protein for Ras-like GTPase
34444423RasGEF domain
24443421RasGEF N-terminal motif
78978847RhoGAP domain
66666636RhoGEF domain
23233215SPRY domain
33333318RNA polymerase Rpb1, domain 2
1111116Guanylate kinase
34343320Gelsolin repeat
8108810953UBA/TS-N domain
172017181616104PHD-finger
11114GGL domain
45555529HECT-domain (ubiquitin-transferase)
22212211Helix-hairpin-helix motif
1111116MSP (Major sperm protein) domain
361054634Ribonuclease III domain
12221210Region in Clathrin and VPS
22222212RanBP1 domain
22222212PPIC-type PPIASE domain
1211117Zn-finger in Ran binding protein and others
181717212020113Zinc finger C-x8-C-x5-C-x3-H type (and similar)
13231212Poly(ADP-ribose) polymerase catalytic domain
12227Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
505569847261391F-box domain
1111116Elongation factor 1 gamma, conserved domain
23333317Calpain family cysteine protease
221229Copper fist DNA binding domain
55554529CRAL/TRIO domain
219191962287BTB/POZ domain
2125Ricin-type beta-trefoil lectin domain
1111116Inhibitor of Apoptosis domain
34344321Voltage gated chloride channel
12322212Caspase domain
1110915101065GDSL-like Lipase/Acylhydrolase
1112117Poly-adenylate binding protein, unique domain
11114POLO box duplicated region
11NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
192120181818114ABC transporter transmembrane region
22Integrase core domain
46955837FAD binding domain
515116151264Condensation domain
1111116S-adenosyl-L-homocysteine hydrolase, NAD binding domain
111115HAMP domain
22222212ribosomal L5P family C-terminus
56555531Insulinase (Peptidase family M16)
33333318Dehydrogenase E1 component
1111116Lumazine binding domain
46665633Elongation factor G C-terminus
44444424HMGL-like
24444422DnaJ central domain
2242212Starch binding domain
22332214Ribosomal protein L1p/L10e family
861087948Cation transporting ATPase, C-terminus
98111071156Cation transporter/ATPase, N-terminus
212117dUTPase
35444424Aconitase C-terminal domain
14233316Amino acid kinase family
1111116N-(5'phosphoribosyl)anthranilate (PRA) isomerase
91526152029114Acyl transferase domain
1111116Urease beta subunit
55775837Dihydrodipicolinate synthetase family
292838323234193haloacid dehalogenase-like hydrolase
76876640Glycosyl hydrolases family 2
72016129973Glycosyl hydrolases family 18
11114Proliferating cell nuclear antigen, N-terminal domain
1111116Acylphosphatase
1111116Adenylosuccinate synthetase
3331313Asparaginase, N-terminal
1111116Peptidase S24-like
1111116Inorganic pyrophosphatase
108959950Glycosyl hydrolases family 16
22232213Glycosyl hydrolases family 15
76566636NADH:flavin oxidoreductase / NADH oxidase family
233223153-hydroxyacyl-CoA dehydrogenase, C-terminal domain
33433521Glycosyl hydrolase family 20, catalytic domain
34444423HhH-GPD superfamily base excision DNA repair protein
1111116AIR carboxylase
191829232626141GMC oxidoreductase
22442418Asparagine synthase
9811891055Fungal cellulose binding domain
56666635Septin
2111117EF-1 guanine nucleotide exchange domain
1111116Homoserine dehydrogenase
1225Flavin-binding monooxygenase-like
11LPXTG cell wall anchor motif
14333317tRNA synthetases class I (E and Q), catalytic domain
21222211tRNA synthetases class I (R)
44444525XPG N-terminal domain
810131051258Metallo-beta-lactamase superfamily
121217F5/8 type C domain
13233214Choline/Carnitine o-acyltransferase
1111116Putative esterase
1111116Ferrochelatase
22221211Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1121117Arginosuccinate synthase
1111116Electron transfer flavoprotein FAD-binding domain
33333318RNB domain
56754431Dioxygenase
22333316CNH domain
1111116Diacylglycerol kinase catalytic domain
48892839Dual specificity phosphatase, catalytic domain
6713
23332316P21-Rho-binding domain
11121312121373PX domain
23332316Ras association (RalGDS/AF-6) domain
56765635UBX domain
44444424VHS domain
1111116Phosphoinositide 3-kinase C2
22223213DAHP synthetase I family
8813891056Carbon-nitrogen hydrolase
1112229N-acetyltransferase
1111116Prephenate dehydratase
55553730Syntaxin
35555528Pumilio-family RNA binding repeat
57776739Histone-like transcription factor (CBF/NF-Y) and archaeal histone
1111116Pterin binding enzyme
22222212ER lumen protein retaining receptor
22222212Glycoprotease family
1121229Histidinol dehydrogenase
34443422impB/mucB/samB family
1111116
1111116Ribosomal L15
1111116Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
1111116Ribosomal L28 family
1111116Ribosomal L29 protein
1111116Ribosomal L39 protein
1121117Ribosomal S17
1121117Ribulose-phosphate 3 epimerase family
1111116Translationally controlled tumour protein
53653426Glycosyl hydrolase family 7
1111116RNA pseudouridylate synthase
44444424Histone deacetylase domain
57888743POT family
111115PWWP domain
82217231219101SET domain
691211101058Isochorismatase family
35544526Permease family
1111116Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
55556632XPG I-region
1111116Acetokinase family
43333319DNA photolyase
11NlpC/P60 family
11Nitroreductase family
23242215Sulfatase
11111166,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
12221210Acyl CoA binding protein
24443421Cullin family
29131321352FAD binding domain
85121161355O-methyltransferase domain
24655325EamA-like transporter family
22222212
78888847ThiF family
1111116Ribosomal family S4e
34563526Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
34545526Ammonium Transporter Family
36766836Sulfate permease family
1111116MATH domain
22222212Dehydratase family
1112117Transaldolase/Fructose-6-phosphate aldolase
22321212Mechanosensitive ion channel
2111218GTP cyclohydrolase II
21111173,4-dihydroxy-2-butanone 4-phosphate synthase
34443422Adaptor complexes medium subunit family
66856839Exonuclease
22222212Dipeptidyl peptidase IV (DPP IV) N-terminal region
2158NB-ARC domain
12131813121482Glycosyl hydrolase family 3 N terminal domain
1111116Ribosomal protein L44
112Sodium:sulfate symporter transmembrane region
1111116DNA-dependent RNA polymerase
22222212FAD binding domain in molybdopterin dehydrogenase
1111116Glycosyl transferase family 4
22112210HCO3- transporter family
22222313Nucleosome assembly protein (NAP)
34444423Synaptobrevin
111115GMP synthase C terminal domain
11Phage lysozyme
13114LAGLIDADG endonuclease
46566532Adenosine/AMP deaminase
67875841Oxidoreductase FAD-binding domain
21124515Thioesterase domain
22222212Histidine biosynthesis protein
33333318Glycosyltransferase family 20
221128UDP-glucose/GDP-mannose dehydrogenase family, central domain
22222212Carbamoyl-phosphate synthase small chain, CPSase domain
4421516PAS fold
12221210Probable molybdopterin binding domain
44444424Sec1 family
22222212GDP dissociation inhibitor
36863935Sodium/hydrogen exchanger family
22222212RNA polymerase Rpb3/RpoA insert domain
44454425Initiation factor 2 subunit family
11PQQ enzyme repeat
122229Electron transfer flavoprotein domain
2111117Uricase
2111117Ribosomal S3Ae family
1111116Ribosomal L27 protein
2111319GTP1/OBG
32232214Gamma-glutamyltranspeptidase
1