PFAM Domains • Tuber melanosporum Mel28 v1.0
Please note that this organism is for archival use only. Please see the current Tuber melanosporum Mel28 v1.2 site for the latest data and information.
Annotations/GenomesHebcy1Lacbi2Neucr1Oidma1Paxin1Tubme1TotalAnnotation Description
PFAMs
7,7638,6567,18512,2698,9485,89950,720
453942594545275ATPase family associated with various cellular activities (AAA)
444935754735285ABC transporter
44444424ATP synthase alpha/beta family, nucleotide-binding domain
112EGF-like domain
18161514141693Elongation factor Tu GTP binding domain
1120151510879Helix-loop-helix DNA-binding domain
710356334Hsp20/alpha crystallin family
1215899962Hsp70 protein
889881152KH domain
1111116SH2 domain
294021232620159SH3 domain
11151010111168Actin
3295491489817439Ankyrin repeat
156PAN domain
89879748ADP-ribosylation factor family
16241732343126Eukaryotic aspartyl protease
33443421Cyclic nucleotide-binding domain
11Cytochrome b(C-terminal)/b6/petD
2125Cytochrome b/b6/petB
111115Cytochrome c
91128333Double-stranded RNA binding motif
201818181717108EF hand
1231294Fe-4S binding domain
11332212Fibronectin type III domain
22Globin
61363314880Glutathione S-transferase, C-terminal domain
25111212Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
44Hemopexin
8106710445Homeodomain
11Laminin EGF domain
22432215lactate/malate dehydrogenase, NAD binding domain
57556634Myosin head (motor domain)
91864117019626610Cytochrome P450
209217103128274931,024Protein kinase domain
18141229161099Pyridine nucleotide-disulphide oxidoreductase
295325302425186Ras family
67141671262Response regulator receiver domain
782316440RNase H
657166556562384RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
11Retroviral aspartyl protease
171312Reverse transcriptase (RNA-dependent DNA polymerase)
213Serpin (serine protease inhibitor)
21221210Copper/zinc superoxide dismutase (SODC)
23232214Iron/manganese superoxide dismutases, alpha-hairpin domain
1256132745Subtilase family
2221381543218285Sugar (and other) transporter
1010111112862Thioredoxin
1326Trypsin
96565637Tubulin/FtsZ family, GTPase domain
56547734von Willebrand factor type A domain
656352947441389Zinc finger, C2H2 type
616638486136310Zinc finger, C3HC4 type (RING finger)
2134125199100Zinc knuckle
22232213Protein-tyrosine phosphatase
5049582566345521short chain dehydrogenase
2431291342514257Zinc-binding dehydrogenase
54574429Thiolase, N-terminal domain
359509480Beta-ketoacyl synthase, N-terminal domain
376443272Fe-2S iron-sulfur cluster binding domain
314Papain family cysteine protease
11331110Enolase, C-terminal TIM barrel domain
246Cytochrome C and Quinol oxidase polypeptide I
112Cytochrome C oxidase subunit II, periplasmic domain
7131079753Glutamine amidotransferase class-I
11131010131269TCP-1/cpn60 chaperonin family
112ATP synthase A chain
47554328Glutamine synthetase, catalytic domain
1122118Triosephosphate isomerase
14201316171595E1-E2 ATPase
15248920985Core histone H2A/H2B/H3/H4
1326Copper binding proteins, plastocyanin/azurin family
891056745Alpha amylase, catalytic domain
56216222Phorbol esters/diacylglycerol binding domain (C1 domain)
54994839Bacterial transferase hexapeptide (six repeats)
33334420tRNA synthetases class I (I, L, M and V)
1014579752Cyclin, N-terminal domain
1715964413149Carboxylesterase family
44445425DNA polymerase family B
34453423ATP synthase subunit C
83452123Peroxidase
726371154Beta-lactamase
54244322C-5 cytosine-specific DNA methylase
112NADH dehydrogenase
323327303121174Calcineurin-like phosphoesterase
1095179353Cellulase (glycosyl hydrolase family 5)
65797640tRNA synthetases class II (D, K and N)
384137424334235Mitochondrial carrier protein
11recA bacterial DNA recombination protein
14121324191092Aminotransferase class I and II
688118748Phosphoribosyl transferase domain
13131110161073Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111116Phosphoglycerate kinase
23222213Ribosomal protein S4/S9 N-terminal domain
22322213Ribosomal protein S12/S23
11Bacterial regulatory helix-turn-helix proteins, AraC family
2111117Chaperonin 10 Kd subunit
1718129141282C2 domain
172418171718111PH domain
677205954bZIP transcription factor
121514451810114Aldehyde dehydrogenase family
6573994696056822Fungal Zn(2)-Cys(6) binuclear cluster domain
242321374119165Cytochrome b5-like Heme/Steroid binding domain
33321214Oxidoreductase molybdopterin binding domain
7815188965Oxidoreductase NAD-binding domain
262225312319146SNF2 family N-terminal domain
23222213Ribosomal protein S7p/S5e
232320222121130Ubiquitin-conjugating enzyme
56597537Isocitrate/isopropylmalate dehydrogenase
22212211Ribosomal Proteins L2, RNA binding domain
2211219Hsp90 protein
22231212Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111116Dihydrofolate reductase
2338Chitin recognition protein
59321222Cysteine-rich secretory protein family
1111116Ribosomal protein S3, C-terminal domain
11151110Cupin
12221210Annexin
811313Eukaryotic-type carbonic anhydrase
112Chalcone and stilbene synthases, N-terminal domain
333333182-oxoacid dehydrogenases acyltransferase (catalytic domain)
213114324Catalase
11114Disintegrin
6118UDP-glucoronosyl and UDP-glucosyl transferase
567155341Aminotransferase class-III
24222214Ribosomal protein S19
1111116DNA gyrase B
335145434Thiamine pyrophosphate enzyme, central domain
34354423Lyase
23231213Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
2112118Adenylate and Guanylate cyclase catalytic domain
1111116ATP synthase delta (OSCP) subunit
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
1211117Indole-3-glycerol phosphate synthase
4213111Aromatic amino acid lyase
1121117Pyruvate kinase, barrel domain
910101091058Kinesin motor domain
353628283726190DnaJ domain
14141514161487Proteasome subunit
67164226Major intrinsic protein
1111217ATP synthase
21133221Glycosyl hydrolase family 1
11111163'5'-cyclic nucleotide phosphodiesterase
1121117Profilin
2111229Ribosomal protein L22p/L17e
22222212Ribosomal protein L14p/L23e
182112123112106Ubiquitin family
55645429Cofilin/tropomyosin-type actin-binding protein
1123331314-3-3 protein
2252314Alkaline phosphatase
112116Zinc carboxypeptidase
26241868298173Aldo/keto reductase family
12141717121688Myb-like DNA-binding domain
55335425Forkhead domain
2417Glycosyl hydrolases family 32 N-terminal domain
1111116Ribosomal protein L16p/L10e
22222212Ribosomal protein S14p/S29e
36434424FKBP-type peptidyl-prolyl cis-trans isomerase
1111116Glutathione peroxidase
12212210
656135439Flavodoxin
1111116Calreticulin family
338714439Common central domain of tyrosinase
768136545Aminotransferase class-V
2111117Ribonucleotide reductase, small chain
518040377235315DEAD/DEAH box helicase
90115758111065536Helicase conserved C-terminal domain
112Fructose-bisphosphate aldolase class-I
1112117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22222212Ribosomal protein L23
1111217Pyridoxal-dependent decarboxylase, C-terminal sheet domain
212218Ribosomal protein L5
546135437Pyridoxal-dependent decarboxylase conserved domain
33433319Citrate synthase, C-terminal domain
66654532GHMP kinases N terminal domain
66576232Biotin carboxylase, N-terminal domain
1111228Tryptophan synthase alpha chain
77111311958Pyridoxal-phosphate dependent enzyme
18141717151192NUDIX domain
65653328pfkB family carbohydrate kinase
262213236Glycosyl hydrolases family 28
112Luciferase-like monooxygenase
22222212Ribosomal protein L3
22222212Ribosomal protein L11, RNA binding domain
97101691263Histidine phosphatase superfamily (branch 1)
11122411Thymidylate synthase
1113Lipoxygenase
44445425ATP synthase alpha/beta chain, C terminal domain
55546631Calponin homology (CH) domain
55465429Glutamine amidotransferases class-II
22222212Ribosomal protein S15
3311311Thaumatin family
1121117Fructose-1-6-bisphosphatase, N-terminal domain
1111116Ribonucleotide reductase, all-alpha domain
22223213Ribosomal protein S2
33252217SRF-type transcription factor (DNA-binding and dimerisation domain)
1012689853GATA zinc finger
182320544516176Amino acid permease
112Bacterial regulatory proteins, crp family
6821011643Prolyl oligopeptidase family
1122129Ribosomal protein L30p/L7e
786922456Histidine phosphatase superfamily (branch 2)
111115Respiratory-chain NADH dehydrogenase, 30 Kd subunit
48465431Aconitase family (aconitate hydratase)
142119Glycosyl hydrolase family 10
33431317Glycosyl hydrolases family 17
22222212Ribosomal protein S5, N-terminal domain
2211118Nucleoside diphosphate kinase
2316Tetraspanin family
224Galactoside-binding lectin
22122211Ribosomal protein S10p/S20e
584106336Arrestin (or S-antigen), N-terminal domain
1111217Phosphoglucose isomerase
1111116Carbohydrate phosphorylase
1111116SecY translocase
15111110Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222212Ribosomal protein L6
583107336Polyprenyl synthetase
42552220Hexokinase
687712444Dynamin family
1211117Transcription factor TFIID (or TATA-binding protein, TBP)
45453425Rieske [2Fe-2S] domain
11Phytochrome region
336Proton-conducting membrane transporter
987106444Biotin-requiring enzyme
1111217Phosphofructokinase
22222111Ribosomal protein S17
1212118Hydroxymethylglutaryl-coenzyme A reductase
32334318FGGY family of carbohydrate kinases, N-terminal domain
8871913661Enoyl-CoA hydratase/isomerase
11Insect cuticle protein
22222212Ribosomal protein S9/S16
33322215Transcription factor TFIIB repeat
77798543Cytidine and deoxycytidylate deaminase zinc-binding region
1111116Molybdopterin oxidoreductase
10219718368Chromo (CHRromatin Organisation MOdifier) domain
34423117Phosphatidylinositol-specific phospholipase C, Y domain
34523320Phosphatidylinositol-specific phospholipase C, X domain
64677636D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
46232219Malic enzyme, N-terminal domain
11211176-phosphogluconate dehydrogenase, C-terminal domain
313102615572Multicopper oxidase
11Granulin
10891411658WW domain
2211219Ribosomal RNA adenine dimethylase
112Yeast PIR protein repeat
1462211031464781001,194WD domain, G-beta repeat
33565527Heavy-metal-associated domain
11Transferrin
33434421Adenylate kinase
22131312Phosphoglucomutase/phosphomannomutase, C-terminal domain
1122129Ribosomal protein S8
2211118Ribosomal protein S11
87446433LIM domain
347Matrixin
33222214Regulator of chromosome condensation (RCC1) repeat
22222111Ribosomal protein S13/S18
213NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
22335217chorismate binding enzyme
3443231960s Acidic ribosomal protein
66456431Prenyltransferase and squalene oxidase repeat
56657635Protein kinase C terminal domain
1121117Single-strand binding protein family
1111116S-adenosylmethionine synthetase, N-terminal domain
10107610649Bromodomain
9881981163Acyl-CoA dehydrogenase, C-terminal domain
14161415151488Ubiquitin carboxyl-terminal hydrolase
111115Ribosomal protein L36
3315214Ribonuclease T2 family
64334323HSF-type DNA-binding
22223112SRP54-type protein, GTPase domain
1111217Urease alpha-subunit, N-terminal domain
10741210346Serine carboxypeptidase
98888849Phosphatidylinositol 3- and 4-kinase
32142113Transketolase, thiamine diphosphate binding domain
2810Glycosyl hydrolases family 11
1113WHEP-TRS domain
22542217Inositol monophosphatase family
55436427Glutaredoxin
42343218Isocitrate lyase family
11222210Serine hydroxymethyltransferase
22163115Iron-containing alcohol dehydrogenase
22322112Ribosomal protein L10
58425327KOW motif
1111116Ribosomal protein L34
22322213RF-1 domain
12232212Sodium:solute symporter family
1111116Imidazoleglycerol-phosphate dehydratase
1111116DNA polymerase family A
1111318IMP dehydrogenase / GMP reductase domain
1111116Glucose-6-phosphate dehydrogenase, NAD binding domain
99559441Protein phosphatase 2C
33223417Nucleotidyl transferase
77311432Carbonic anhydrase
1111127Phosphoribulokinase / Uridine kinase family
11851126465Fatty acid desaturase
66666636MutS domain V
1112117Delta-aminolevulinic acid dehydratase
52454323Arginase family
66666636MCM P-loop domain
1221219Squalene/phytoene synthase
911878952FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
252927754721224AMP-binding enzyme
19493313390G-protein alpha subunit
141612715872HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
11Cytochrome c oxidase subunit III
4411134945His Kinase A (phospho-acceptor) domain
32333317Armadillo/beta-catenin-like repeat
387323722638270Tetratricopeptide repeat
22332113Ion transport protein
1111116DNA gyrase/topoisomerase IV, subunit A
111291191062BRCA1 C Terminus (BRCT) domain
57976539Glycosyl transferases group 1
63473225Glycosyl transferase family 2
41121211SAM domain (Sterile alpha motif)
44213115linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
1225Pectate lyase
32319ribonuclease
111115Urease, gamma subunit
33444321CoA-ligase
8584611785Phosphopantetheine attachment site
22323214Formyl transferase
9981010753Metallopeptidase family M24
13161414141081Leucine Rich Repeat
322023862619206alpha/beta hydrolase fold
33333318RNA polymerase Rpb2, domain 6
57445429PB1 domain
22222212Staphylococcal nuclease homologue
11111010111164Rab-GTPase-TBC domain
1111116Tudor domain
32112110WH1 domain
34343522Zinc finger, ZZ type
1111116HRDC domain
109910111059CBS domain
22222212Ribosomal protein L13
22222212Ribosomal protein L4/L1 family
1111116Clp protease
54536528S1 RNA binding domain
111115HIUase/Transthyretin family
44246424AhpC/TSA family
44444323tRNA synthetases class I (W and Y)
111115UvrD/REP helicase N-terminal domain
44464527Rhodanese-like domain
22223112Universal stress protein family
312827762313198Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
1121319C-terminal regulatory domain of Threonine dehydratase
22222212AIR synthase related protein, N-terminal domain
668106945tRNA synthetase class II core domain (G, H, P, S and T)
1113SpoU rRNA Methylase family
3238Phage integrase family
25222215Tetrapyrrole (Corrin/Porphyrin) Methylases
1111116Glycosyl transferase family, a/b domain
112PDZ domain
212152325Class II Aldolase and Adducin N-terminal domain
43444423Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
88435533Fes/CIP4, and EFC/F-BAR homology domain
55544427IQ calmodulin-binding motif
22222212Phosphoinositide 3-kinase family, accessory domain (PIK domain)
34644425Phospholipase D Active site motif
1111116Regulator of G protein signaling domain
44446426GTPase-activator protein for Ras-like GTPase
97446434RasGEF domain
88449538RasGEF N-terminal motif
1713108131071RhoGAP domain
13166615662RhoGEF domain
44334523SPRY domain
33336422RNA polymerase Rpb1, domain 2
1122129Guanylate kinase
44443322Gelsolin repeat
910987851UBA/TS-N domain
231817171613104PHD-finger
11Filamin/ABP280 repeat
111115GGL domain
65665634HECT-domain (ubiquitin-transferase)
12232212Helix-hairpin-helix motif
1211117MSP (Major sperm protein) domain
87449537Ribonuclease III domain
22322112Region in Clathrin and VPS
43323318RanBP1 domain
22222212PPIC-type PPIASE domain
35343321Zn-finger in Ran binding protein and others
253011182112117Zinc finger C-x8-C-x5-C-x3-H type (and similar)
1124B-box zinc finger
84115221Poly(ADP-ribose) polymerase catalytic domain
121127Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
22815637697739606F-box domain
1211117Elongation factor 1 gamma, conserved domain
58451124Calpain family cysteine protease
32232214Copper fist DNA binding domain
66556533CRAL/TRIO domain
25178529892BTB/POZ domain
111124129Ricin-type beta-trefoil lectin domain
1111116Inhibitor of Apoptosis domain
33332317Voltage gated chloride channel
1617246146Caspase domain
5210193140GDSL-like Lipase/Acylhydrolase
2211118Poly-adenylate binding protein, unique domain
131117POLO box duplicated region
112NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
191818411614126ABC transporter transmembrane region
2614049Integrase core domain
33593427FAD binding domain
213174229Condensation domain
1111116S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1112117HAMP domain
22222111ribosomal L5P family C-terminus
55575532Insulinase (Peptidase family M16)
45347326Dehydrogenase E1 component
1111116Lumazine binding domain
1010666644Elongation factor G C-terminus
44566328HMGL-like
44444424DnaJ central domain
4132212Starch binding domain
32222213Ribosomal protein L1p/L10e family
75778842Cation transporting ATPase, C-terminus
1014897856Cation transporter/ATPase, N-terminus
121116dUTPase
45465428Aconitase C-terminal domain
35344322Amino acid kinase family
1211117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
548507377Acyl transferase domain
1111116Urease beta subunit
21482219Dihydrodipicolinate synthetase family
302829402823178haloacid dehalogenase-like hydrolase
115141123Glycosyl hydrolases family 2
111192713475Glycosyl hydrolases family 18
1111116Proliferating cell nuclear antigen, N-terminal domain
11Acylphosphatase
1211218Adenylosuccinate synthetase
1132119Asparaginase, N-terminal
11Beta defensin
34322317Peptidase S24-like
1121117Inorganic pyrophosphatase
6413103440Glycosyl hydrolases family 16
42244117Glycosyl hydrolases family 15
593109137NADH:flavin oxidoreductase / NADH oxidase family
114431143-hydroxyacyl-CoA dehydrogenase, C-terminal domain
21146216Glycosyl hydrolase family 20, catalytic domain
45646328HhH-GPD superfamily base excision DNA repair protein
1111217AIR carboxylase
18127267575GMC oxidoreductase
22242214Asparagine synthase
312135363Fungal cellulose binding domain
77656637Septin
1112117EF-1 guanine nucleotide exchange domain
1111116Homoserine dehydrogenase
2334113Flavin-binding monooxygenase-like
11LPXTG cell wall anchor motif
33333318tRNA synthetases class I (E and Q), catalytic domain
12141110tRNA synthetases class I (R)
517445338XPG N-terminal domain
89102310767Metallo-beta-lactamase superfamily
12418F5/8 type C domain
44224218Choline/Carnitine o-acyltransferase
1111116Putative esterase
11Furin-like cysteine rich region
1135Glycosyl hydrolase family 9
1111116Ferrochelatase
22322213Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
12231110Arginosuccinate synthase
1111116Electron transfer flavoprotein FAD-binding domain
33333318RNB domain
224103223Dioxygenase
45355224CNH domain
12232111Diacylglycerol kinase catalytic domain
12167814865Dual specificity phosphatase, catalytic domain
1113MyTH4 domain
56324222P21-Rho-binding domain
16141211121277PX domain
43343320Ras association (RalGDS/AF-6) domain
46444628UBX domain
56445428VHS domain
1111116Phosphoinositide 3-kinase C2
22232213DAHP synthetase I family
339104635Carbon-nitrogen hydrolase
145N-acetyltransferase
11Geminivirus Rep catalytic domain
1111116Prephenate dehydratase
44456427Syntaxin
55555530Pumilio-family RNA binding repeat
76868641Histone-like transcription factor (CBF/NF-Y) and archaeal histone
1211117Pterin binding enzyme
1122129ER lumen protein retaining receptor
22222212Glycoprotease family
1112117Histidinol dehydrogenase
33443320impB/mucB/samB family
1111228
1111116Ribosomal L15
1111116Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
1113Ribosomal prokaryotic L21 protein
1111116Ribosomal L28 family
1111116Ribosomal L29 protein
111115Ribosomal L39 protein
1111318Ribosomal S17
1112117Ribulose-phosphate 3 epimerase family
1111116Translationally controlled tumour protein
15814Glycosyl hydrolase family 7
22212110RNA pseudouridylate synthase
77457434Histone deacetylase domain
24151316POT family
26112113PWWP domain
19291816129103SET domain
623184740Isochorismatase family
42324419Permease family
1111116Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
11385321381XPG I-region
1124Acetokinase family
12115DNA photolyase
22NlpC/P60 family
12115Cation-independent mannose-6-phosphate receptor repeat
123Nitroreductase family
1416Cytosol aminopeptidase family, catalytic domain
113111118Sulfatase
11111166,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
33223215Acyl CoA binding protein
79458437Cullin family
1113Elongation factor TS
269245753FAD binding domain
387336259O-methyltransferase domain
106464232EamA-like transporter family
22112210
87887846ThiF family
1111116Ribosomal family S4e
223221434Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
47482429Ammonium Transporter Family
37445427Sulfate permease family
1111116MATH domain
11Gastrin/cholecystokinin family
22222212Dehydratase family
43223115Transaldolase/Fructose-6-phosphate aldolase
33232215Mechanosensitive ion channel
1111116GTP cyclohydrolase II
11111163,4-dihydroxy-2-butanone 4-phosphate synthase
53444424Adaptor complexes medium subunit family
88767642Exonuclease
11111510Dipeptidyl peptidase IV (DPP IV) N-terminal region
21115NB-ARC domain
5210354561Glycosyl hydrolase family 3 N terminal domain
1111116Ribosomal protein L44
11Sodium:sulfate symporter transmembrane region
1111217DNA-dependent RNA polymerase
112FAD binding domain in molybdopterin dehydrogenase
11Peptidase S7, Flavivirus NS3 serine protease
1111116Glycosyl transferase family 4
122128HCO3- transporter family
43222215Nucleosome assembly protein (NAP)
44454324Synaptobrevin
1311219GMP synthase C terminal domain
33511Phage lysozyme
55LAGLIDADG endonuclease
37493228Adenosine/AMP deaminase
54974534Oxidoreductase FAD-binding domain
1211210127Thioesterase domain
22322213Histidine biosynthesis protein
34353321Glycosyltransferase family 20
112318UDP-glucose/GDP-mannose dehydrogenase family, central domain
24322215Carbamoyl-phosphate synthase small chain, CPSase domain
314PAS fold
11Diguanylate cyclase, GGDEF domain
22322213Probable molybdopterin binding domain
43444322Sec1 family
22222212GDP dissociation inhibitor
57577334Sodium/hydrogen exchanger family
22222212RNA polymerase Rpb3/RpoA insert domain
44554426Initiation factor 2 subunit family
22223213Electron transfer flavoprotein domain
1111116Uricase
1111116Ribosomal S3Ae family
1111116Ribosomal L27 protein
111