PFAM Domains • Phytophthora ramorum v1.1
Annotations/GenomesPhyra1_1Physo1_1TotalAnnotation Description
PFAMs
9,38510,57319,958
117 transmembrane receptor (Secretin family)
4487 transmembrane sweet-taste receptor of 3 GCPR
4954103ATPase family associated with various cellular activities (AAA)
158163321ABC transporter
459ATP synthase alpha/beta family, nucleotide-binding domain
257EGF-like domain
191736Elongation factor Tu GTP binding domain
6612Helix-loop-helix DNA-binding domain
171835Hsp70 protein
5611KH domain
347SH2 domain
336SH3 domain
9918Actin
153194347Ankyrin repeat
222042PAN domain
131326ADP-ribosylation factor family
131124Eukaryotic aspartyl protease
5373126Cyclic nucleotide-binding domain
213Cytochrome c
549Double-stranded RNA binding motif
121125246EF hand
2244Fe-4S binding domain
11Intermediate filament protein
101525Fibronectin type III domain
123Globin
131932Glutathione S-transferase, C-terminal domain
6612Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
437Homeodomain
162339Kazal-type serine protease inhibitor domain
224lactate/malate dehydrogenase, NAD binding domain
242448Myosin head (motor domain)
242751Cytochrome P450
370401771Protein kinase domain
171835Pyridine nucleotide-disulphide oxidoreductase
353469Ras family
5611Response regulator receiver domain
213960RNase H
6566131RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
22628Retroviral aspartyl protease
172432604Reverse transcriptase (RNA-dependent DNA polymerase)
112Copper/zinc superoxide dismutase (SODC)
213Iron/manganese superoxide dismutases, alpha-hairpin domain
7916Subtilase family
7685161Sugar (and other) transporter
11Sushi repeat (SCR repeat)
232144Thioredoxin
11Trefoil (P-type) domain
293261Trypsin
3710Thrombospondin type 1 domain
151126Tubulin/FtsZ family, GTPase domain
426von Willebrand factor type A domain
4466110Zinc finger, C2H2 type
7384157Zinc finger, C3HC4 type (RING finger)
203358561Zinc knuckle
336Protein-tyrosine phosphatase
5252104short chain dehydrogenase
474390Zinc-binding dehydrogenase
538Thiolase, N-terminal domain
448Beta-ketoacyl synthase, N-terminal domain
4482Fe-2S iron-sulfur cluster binding domain
241943Papain family cysteine protease
347Enolase, C-terminal TIM barrel domain
9918Glutamine amidotransferase class-I
91019TCP-1/cpn60 chaperonin family
22Glutamine synthetase, catalytic domain
314Triosephosphate isomerase
263359E1-E2 ATPase
13821Core histone H2A/H2B/H3/H4
213Alpha amylase, catalytic domain
213Phorbol esters/diacylglycerol binding domain (C1 domain)
141529Bacterial transferase hexapeptide (six repeats)
11819tRNA synthetases class I (I, L, M and V)
171936Cyclin, N-terminal domain
141125Carboxylesterase family
448DNA polymerase family B
314ATP synthase subunit C
6713Peroxidase
224Beta-lactamase
504797Calcineurin-like phosphoesterase
181836Cellulase (glycosyl hydrolase family 5)
6612tRNA synthetases class II (D, K and N)
474592Mitochondrial carrier protein
112recA bacterial DNA recombination protein
211738Aminotransferase class I and II
8816Phosphoribosyl transferase domain
211637Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
314Phosphoglycerate kinase
112Ribosomal protein S4/S9 N-terminal domain
213Ribosomal protein S12/S23
112Chaperonin 10 Kd subunit
475097C2 domain
105105210PH domain
8614bZIP transcription factor
222143Aldehyde dehydrogenase family
111223Cytochrome b5-like Heme/Steroid binding domain
224Oxidoreductase molybdopterin binding domain
111425Oxidoreductase NAD-binding domain
202040SNF2 family N-terminal domain
112Ribosomal protein S7p/S5e
182038Ubiquitin-conjugating enzyme
325Isocitrate/isopropylmalate dehydrogenase
112Ribosomal Proteins L2, RNA binding domain
123Chitinase class I
336Hsp90 protein
224Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
123Dihydrofolate reductase
212950Cysteine-rich secretory protein family
112Ribosomal protein S3, C-terminal domain
8816Annexin
101424Eukaryotic-type carbonic anhydrase
67132-oxoacid dehydrogenases acyltransferase (catalytic domain)
336Catalase
213UDP-glucoronosyl and UDP-glucosyl transferase
10616Aminotransferase class-III
112Ribosomal protein S19
224DNA gyrase B
112Thiamine pyrophosphate enzyme, central domain
336Lyase
5611Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
448Adenylate and Guanylate cyclase catalytic domain
112ATP synthase delta (OSCP) subunit
112Orotidine 5'-phosphate decarboxylase / HUMPS family
224ATP:guanido phosphotransferase, C-terminal catalytic domain
112Indole-3-glycerol phosphate synthase
112Aromatic amino acid lyase
91423Pyruvate kinase, barrel domain
5556111Kinesin motor domain
504898DnaJ domain
151429Proteasome subunit
293160Major intrinsic protein
112ATP synthase
161834Glycosyl hydrolase family 1
1111223'5'-cyclic nucleotide phosphodiesterase
224Ribosomal protein L22p/L17e
112Ribosomal protein L14p/L23e
192443Ubiquitin family
426Cofilin/tropomyosin-type actin-binding protein
11214-3-3 protein
112Alkaline phosphatase
8816Zinc carboxypeptidase
292756Aldo/keto reductase family
6068128Myb-like DNA-binding domain
336Glycosyl hydrolases family 32 N-terminal domain
11Ribosomal protein S14p/S29e
121325FKBP-type peptidyl-prolyl cis-trans isomerase
6612Glutathione peroxidase
213
151227Flavodoxin
123
325Calreticulin family
257Common central domain of tyrosinase
213Thymidine kinase
459Aminotransferase class-V
336Ribonucleotide reductase, small chain
484795DEAD/DEAH box helicase
8385168Helicase conserved C-terminal domain
112EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
314Ribosomal protein L23
5510Pyridoxal-dependent decarboxylase, C-terminal sheet domain
112Ribosomal protein L5
6511Pyridoxal-dependent decarboxylase conserved domain
112Citrate synthase, C-terminal domain
8412GHMP kinases N terminal domain
6713Biotin carboxylase, N-terminal domain
112Tryptophan synthase alpha chain
121325Pyridoxal-phosphate dependent enzyme
141226NUDIX domain
369pfkB family carbohydrate kinase
162339Glycosyl hydrolases family 28
224Ribosomal protein L3
224Ribosomal protein L11, RNA binding domain
141428Histidine phosphatase superfamily (branch 1)
11Chloramphenicol acetyltransferase
112Thymidylate synthase
123Lipoxygenase
336ATP synthase alpha/beta chain, C terminal domain
7916Calponin homology (CH) domain
325Glutamine amidotransferases class-II
213Ribosomal protein S15
112'Cold-shock' DNA-binding domain
224Fructose-1-6-bisphosphatase, N-terminal domain
112Ribonucleotide reductase, all-alpha domain
11Ribosomal protein S2
112SRF-type transcription factor (DNA-binding and dimerisation domain)
212546Amino acid permease
549Prolyl oligopeptidase family
112Ribosomal protein L30p/L7e
9918Histidine phosphatase superfamily (branch 2)
336Aconitase family (aconitate hydratase)
7512Glycosyl hydrolase family 10
7815Glycosyl hydrolases family 17
224Ribosomal protein S5, N-terminal domain
437Nucleoside diphosphate kinase
4610Tetraspanin family
112Ribosomal protein S10p/S20e
347Arrestin (or S-antigen), N-terminal domain
11Phosphoglucose isomerase
112SecY translocase
112Ribosomal protein L6
336Polyprenyl synthetase
369Dynamin family
11Biopterin-dependent aromatic amino acid hydroxylase
336Transcription factor TFIID (or TATA-binding protein, TBP)
6410Rieske [2Fe-2S] domain
91221Biotin-requiring enzyme
112Phosphofructokinase
437Ribosomal protein S17
112Hydroxymethylglutaryl-coenzyme A reductase
448FGGY family of carbohydrate kinases, N-terminal domain
11920Sodium:dicarboxylate symporter family
10818Enoyl-CoA hydratase/isomerase
224Ribosomal protein S9/S16
224Transcription factor TFIIB repeat
6612Cytidine and deoxycytidylate deaminase zinc-binding region
212647Chromo (CHRromatin Organisation MOdifier) domain
101020D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
145Malic enzyme, N-terminal domain
224PEP-utilising enzyme, mobile domain
1126-phosphogluconate dehydrogenase, C-terminal domain
7916Multicopper oxidase
5250102WW domain
224Ribosomal RNA adenine dimethylase
167168335WD domain, G-beta repeat
11ATP synthase, Delta/Epsilon chain, long alpha-helix domain
8816Heavy-metal-associated domain
7815Adenylate kinase
336Phosphoglucomutase/phosphomannomutase, C-terminal domain
112Ribosomal protein S8
112Ribosomal protein S11
224LIM domain
141630Regulator of chromosome condensation (RCC1) repeat
112Ribosomal protein S13/S18
224chorismate binding enzyme
551060s Acidic ribosomal protein
11CUB domain
336Prenyltransferase and squalene oxidase repeat
191837Protein kinase C terminal domain
112S-adenosylmethionine synthetase, N-terminal domain
181533Bromodomain
171633Acyl-CoA dehydrogenase, C-terminal domain
242549Ubiquitin carboxyl-terminal hydrolase
112Ribosomal protein L36
549Ribonuclease T2 family
162036HSF-type DNA-binding
224SRP54-type protein, GTPase domain
112Urease alpha-subunit, N-terminal domain
141630Serine carboxypeptidase
112Ribosomal protein L20
232346Phosphatidylinositol 3- and 4-kinase
112Transketolase, thiamine diphosphate binding domain
325WHEP-TRS domain
336Inositol monophosphatase family
11
8917Glutaredoxin
112Isocitrate lyase family
224Serine hydroxymethyltransferase
112Iron-containing alcohol dehydrogenase
325Ribosomal protein L10
8513KOW motif
112Ribosomal protein L34
11Ribosomal protein L33
325RF-1 domain
235Sodium:solute symporter family
112Imidazoleglycerol-phosphate dehydratase
11DNA polymerase family A
437IMP dehydrogenase / GMP reductase domain
123Glucose-6-phosphate dehydrogenase, NAD binding domain
235ROK family
252146Protein phosphatase 2C
459Nucleotidyl transferase
257Carbonic anhydrase
112Phosphoribulokinase / Uridine kinase family
15823Fatty acid desaturase
5510MutS domain V
112Delta-aminolevulinic acid dehydratase
112Arginase family
9817MCM P-loop domain
171633FHA domain
282654AMP-binding enzyme
112G-protein alpha subunit
6410HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
437His Kinase A (phospho-acceptor) domain
212748Armadillo/beta-catenin-like repeat
8794181Tetratricopeptide repeat
415798Ion transport protein
224DNA gyrase/topoisomerase IV, subunit A
11Death domain
8614BRCA1 C Terminus (BRCT) domain
5510Glycosyl transferases group 1
235Glycosyl transferase family 2
111122SAM domain (Sterile alpha motif)
325linker histone H1 and H5 family
213Ribosomal protein L7/L12 C-terminal domain
71219Pectate lyase
112Urease, gamma subunit
235CoA-ligase
314Phosphopantetheine attachment site
123Formyl transferase
10919Metallopeptidase family M24
8686172Leucine Rich Repeat
312354alpha/beta hydrolase fold
437RNA polymerase Rpb2, domain 6
7815PB1 domain
235Staphylococcal nuclease homologue
171835Rab-GTPase-TBC domain
112Tudor domain
14923Zinc finger, ZZ type
224HRDC domain
181735CBS domain
224Ribosomal protein L13
224Ribosomal protein L4/L1 family
112Clp protease
347S1 RNA binding domain
11HIUase/Transthyretin family
12719AhpC/TSA family
549tRNA synthetases class I (W and Y)
101121Rhodanese-like domain
11Universal stress protein family
273158Acetyltransferase (GNAT) family
112SecE/Sec61-gamma subunits of protein translocation complex
224C-terminal regulatory domain of Threonine dehydratase
437AIR synthase related protein, N-terminal domain
10919tRNA synthetase class II core domain (G, H, P, S and T)
437SpoU rRNA Methylase family
358Phage integrase family
336Tetrapyrrole (Corrin/Porphyrin) Methylases
213Glycosyl transferase family, a/b domain
333164PDZ domain
112Class II Aldolase and Adducin N-terminal domain
112Diacylglycerol kinase accessory domain
7613Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
11Fes/CIP4, and EFC/F-BAR homology domain
8295177IQ calmodulin-binding motif
347Phosphoinositide 3-kinase family, accessory domain (PIK domain)
162036Phospholipase D Active site motif
6713Regulator of G protein signaling domain
336GTPase-activator protein for Ras-like GTPase
336RasGEF domain
112RasGEF N-terminal motif
358RhoGAP domain
224RhoGEF domain
10919SPRY domain
336RNA polymerase Rpb1, domain 2
112Guanylate kinase
448Gelsolin repeat
131629UBA/TS-N domain
353570PHD-finger
224Filamin/ABP280 repeat
262551HECT-domain (ubiquitin-transferase)
5611Helix-hairpin-helix motif
11BRCA2 repeat
336MSP (Major sperm protein) domain
358Ribonuclease III domain
224Region in Clathrin and VPS
336RanBP1 domain
448PPIC-type PPIASE domain
11819Zn-finger in Ran binding protein and others
273057Zinc finger C-x8-C-x5-C-x3-H type (and similar)
549B-box zinc finger
347Poly(ADP-ribose) polymerase catalytic domain
112Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
192241F-box domain
224Elongation factor 1 gamma, conserved domain
5611Calpain family cysteine protease
101020CRAL/TRIO domain
101020BTB/POZ domain
91019Ricin-type beta-trefoil lectin domain
9817Voltage gated chloride channel
61319GDSL-like Lipase/Acylhydrolase
112Poly-adenylate binding protein, unique domain
112POLO box duplicated region
454590ABC transporter transmembrane region
219570789Integrase core domain
5611FAD binding domain
112Condensation domain
112S-adenosyl-L-homocysteine hydrolase, NAD binding domain
112ribosomal L5P family C-terminus
8513Insulinase (Peptidase family M16)
5510Dehydrogenase E1 component
11Lumazine binding domain
7815Elongation factor G C-terminus
336HMGL-like
448DnaJ central domain
224Sulfotransferase domain
112Starch binding domain
224Ribosomal protein L1p/L10e family
91221Cation transporting ATPase, C-terminus
121325Cation transporter/ATPase, N-terminus
213dUTPase
336Aconitase C-terminal domain
7714Amino acid kinase family
112N-(5'phosphoribosyl)anthranilate (PRA) isomerase
538Acyl transferase domain
112Urease beta subunit
123Dihydrodipicolinate synthetase family
465298haloacid dehalogenase-like hydrolase
112Glycosyl hydrolases family 2
235Glycosyl hydrolases family 18
112Proliferating cell nuclear antigen, N-terminal domain
11Translation initiation factor IF-3, C-terminal domain
11Acylphosphatase
213Adenylosuccinate synthetase
112Asparaginase, N-terminal
336Inorganic pyrophosphatase
263864NADH:flavin oxidoreductase / NADH oxidase family
2133-hydroxyacyl-CoA dehydrogenase, C-terminal domain
448HhH-GPD superfamily base excision DNA repair protein
123AIR carboxylase
101020GMC oxidoreductase
213Asparagine synthase
358Fungal cellulose binding domain
224EF-1 guanine nucleotide exchange domain
224Homoserine dehydrogenase
336tRNA synthetases class I (E and Q), catalytic domain
224tRNA synthetases class I (R)
5813XPG N-terminal domain
7815Metallo-beta-lactamase superfamily
112F5/8 type C domain
7714Choline/Carnitine o-acyltransferase
112Putative esterase
112Ferrochelatase
437Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
112Arginosuccinate synthase
112Electron transfer flavoprotein FAD-binding domain
336RNB domain
131023Dioxygenase
235Diacylglycerol kinase catalytic domain
121224Dual specificity phosphatase, catalytic domain
224MyTH4 domain
549
112P21-Rho-binding domain
6761128PX domain
5510UBX domain
325VHS domain
224Phosphoinositide 3-kinase C2
448DAHP synthetase I family
5611Carbon-nitrogen hydrolase
224Prephenate dehydratase
6612Syntaxin
347Pumilio-family RNA binding repeat
437Histone-like transcription factor (CBF/NF-Y) and archaeal histone
325Pterin binding enzyme
112ER lumen protein retaining receptor
224Glycoprotease family
112Histidinol dehydrogenase
336impB/mucB/samB family
213
112Ribosomal L15
112Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
112Ribosomal prokaryotic L21 protein
112Ribosomal L28 family
112Ribosomal L29 protein
11Ribosomal L39 protein
112Ribosomal S17
134Ribulose-phosphate 3 epimerase family
112Translationally controlled tumour protein
4711Glycosyl hydrolase family 7
112AP2 domain
7815RNA pseudouridylate synthase
11819Histone deacetylase domain
10818POT family
347PWWP domain
385492SET domain
235Isochorismatase family
112Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
5914XPG I-region
112Acetokinase family
549DNA photolyase
336Nitroreductase family
336Cytosol aminopeptidase family, catalytic domain
131730Sulfatase
2466,7-dimethyl-8-ribityllumazine synthase
112Ribosomal protein S16
6511Acyl CoA binding protein
336Cullin family
11Elongation factor TS
336FAD binding domain
121224EamA-like transporter family
549
101020ThiF family
112Ribosomal family S4e
112Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
7815Ammonium Transporter Family
111122Sulfate permease family
11MATH domain
224Uncharacterized protein family UPF0004
336Dehydratase family
11Transaldolase/Fructose-6-phosphate aldolase
224Mechanosensitive ion channel
224GTP cyclohydrolase II
2243,4-dihydroxy-2-butanone 4-phosphate synthase
448Adaptor complexes medium subunit family
549Exonuclease
112Dipeptidyl peptidase IV (DPP IV) N-terminal region
252853Glycosyl hydrolase family 3 N terminal domain
11Ribosomal protein L44
112Sodium:sulfate symporter transmembrane region
112DNA-dependent RNA polymerase
112FAD binding domain in molybdopterin dehydrogenase
112Glycosyl transferase family 4
224Nucleosome assembly protein (NAP)
448Synaptobrevin
112GMP synthase C terminal domain
426Adenosine/AMP deaminase
262147Elicitin
6612Oxidoreductase FAD-binding domain
112Thioesterase domain
224Histidine biosynthesis protein
8816Glycosyltransferase family 20
112UDP-glucose/GDP-mannose dehydrogenase family, central domain
224Carbamoyl-phosphate synthase small chain, CPSase domain
549PAS fold
224
336Probable molybdopterin binding domain
7613Sec1 family
224GDP dissociation inhibitor
121426Sodium/hydrogen exchanger family
224RNA polymerase Rpb3/RpoA insert domain
448Inward rectifier potassium channel transmembrane domain
448Initiation factor 2 subunit family
112PQQ enzyme repeat
112Electron transfer flavoprotein domain
22Uricase
112Ribosomal S3Ae family
11Ribosomal L27 protein
437GTP1/OBG
112Gamma-glutamyltranspeptidase
112Ribosomal L40e family
112GrpE
437TatD related DNase
213Inhibitor of apoptosis-promoting Bax1
11Eukaryotic DNA topoisomerase I, catalytic core
145Dynamin central region
358Carboxyl transferase domain
224UbiA prenyltransferase family
11DegT/DnrJ/EryC1/StrS aminotransferase family
325Endoribonuclease L-PSP
22Phosphorylase superfamily
11Cadherin cytoplasmic region
11Initiator Replication protein
336Cys/Met metabolism PLP-dependent enzyme
5813Glycosyl hydrolases family 31
235NADH ubiquinone oxidoreductase, 20 Kd subunit
112Amino-transferase class IV
5510CDP-alcohol phosphatidyltransferase
123Calpain large subunit, domain III
459ATP dependent DNA ligase domain
224FMN-dependent dehydrogenase
112Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain
123Glycosyl hydrolases family 38 N-terminal domain
224Nitrite and sulphite reductase 4Fe-4S domain
224Presenilin
41620Cutinase
112Ribosomal protein S18
325Ubiquitin carboxyl-terminal hydrolase, family 1
224
213Ribosomal protein S19e
112Ribosomal protein S6e
131932Pectinesterase
437Transcription factor S-II (TFIIS)
112Surface antigen
235emp24/gp25L/p24 family/GOLD
213NifU-like domain
11Cyclin-dependent kinase regulatory subunit
123Asparaginase
11Dihydrodipicolinate reductase, N-terminus
123F-actin capping protein, beta subunit
33Fructose-bisphosphate aldolase class-II
224Semialdehyde dehydrogenase, NAD binding domain
123DNA mismatch repair protein, C-terminal domain
112Dephospho-CoA kinase
459MAPEG family
112G10 protein
112Heme oxygenase
112Succinate dehydrogenase/Fumarate reductase transmembrane subunit
235CD36 family
112DNA topoisomerase
112Elongation factor P (EF-P) OB domain
11Enhancer of rudimentary
112Glucose inhibited division protein A
437Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
213RNA 3'-terminal phosphate cyclase
77143' exoribonuclease family, domain 1
235tRNA pseudouridine synthase D (TruD)
213Coenzyme A transferase
6713SPFH domain / Band 7 family
81018Cytidylyltransferase family
112GDA1/CD39 (nucleoside phosphatase) family
549GNS1/SUR4 family
112Hydroxymethylglutaryl-coenzyme A synthase N terminal
11Inosine-uridine preferring nucleoside hydrolase
112Ribosomal protein L21e
112Ribosomal protein L36e
224Ribosomal protein L6e
314Phosphatidylethanolamine-binding protein
112
448RIO1 family
8614Tub family
336Alanine racemase, N-terminal domain
112Uncharacterized protein family UPF0016
336PP-loop family
112Shwachman-Bodian-Diamond syndrome (SBDS) protein
112SNO glutamine amidotransferase family
213Urocanase Rossmann-like domain
112Translation initiation factor 1A / IF-1
112Asp/Glu/Hydantoin racemase
3811Copper amine oxidase, enzyme domain
112Dihydroorotate dehydrogenase
112Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase
347Macrophage migration inhibitory factor (MIF)
771416S rRNA methyltransferase RsmB/F
112RNA polymerase Rpb5, C-terminal domain
11RNA polymerase Rpb6
325RNA polymerase Rpb3/Rpb11 dimerisation domain
11RNA polymerases N / 8 kDa subunit
112Peptidyl-tRNA hydrolase
112Ribosomal protein L17
112Ribosomal protein L31e
112Ribosomal protein L34e
112Ribosomal protein S28e
224Ribosomal protein S8e
112Shikimate kinase
224Trehalase
325Uncharacterized protein family UPF0029
5510Dihydrouridine synthase (Dus)
112Uroporphyrinogen decarboxylase (URO-D)
437ubiE/COQ5 methyltransferase family
325NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
123Adenylate cyclase associated (CAP) N terminal
325Casein kinase II regulatory subunit
5611Clathrin adaptor complex small chain
224Coproporphyrinogen III oxidase
527Dynein light chain type 1
112Ergosterol biosynthesis ERG4/ERG24 family
112DNA/RNA non-specific endonuclease
112Mur ligase family, catalytic domain
112GTP cyclohydrolase I
538HIT domain
22Mannitol dehydrogenase Rossmann domain
224Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain
112Oxysterol-binding protein
112Phosphomannose isomerase type I
224Protein prenyltransferase alpha subunit repeat
112Ribosomal protein L19
224Ribosomal protein L24e
11Ribosomal protein L35Ae
7714Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
11Ribosomal protein S21e
112Ribosomal protein S7e
325Translation initiation factor SUI1
224Putative undecaprenyl diphosphate synthase
112Carbohydrate kinase
112Thioredoxin-like [2Fe-2S] ferredoxin
112SAICAR synthetase
112Alanine dehydrogenase/PNT, C-terminal domain
7613Aldose 1-epimerase
112Chorismate synthase
224Cytochrome c/c1 heme lyase
235FAD dependent oxidoreductase
112F-actin capping protein alpha subunit
112Formate--tetrahydrofolate ligase
112Fibrillarin
224Malate synthase
112Ribosomal protein L19e
112Ribosomal protein L9, N-terminal domain
112Ribosomal protein S24e
112Ribosomal protein S26e
213Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold
1127,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
4711Phosphoenolpyruvate carboxykinase
112Ribosomal protein L13e
112Telomere recombination
112Glycosyl hydrolases family 35
9817CAP-Gly domain
112
437LacY proton/sugar symporter
112Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
224Pyruvate phosphate dikinase, PEP/pyruvate binding domain
112Polypeptide deformylase
11Pterin 4 alpha carbinolamine dehydratase
336mRNA capping enzyme, catalytic domain
8715OB-fold nucleic acid binding domain
8614Glycosyl hydrolases family 6
191938Kelch motif
224Ribonuclease HII
5510
6472136FYVE zinc finger
5510Sec7 domain
8715NAD dependent epimerase/dehydratase family
145Porphobilinogen deaminase, dipyromethane cofactor binding domain
123SIS domain
112Helix-turn-helix
33Probable transposase
11Ribosomal L25p family
224ARID/BRIGHT DNA binding domain
224Clathrin propeller repeat
10818JAB1/Mov34/MPN/PAD-1 ubiquitin protease
141630PCI domain
336Astacin (Peptidase family M12A)
224tRNA synthetases class I (C) catalytic domain
9817Oxidoreductase family, NAD-binding Rossmann fold
224tRNA synthetases class II core domain (F)
224tRNA synthetases class II (A)
8917Putative GTPase activating protein for Arf
5611tRNA pseudouridine synthase
224ENTH domain
347Jacalin-like lectin domain
171431LSM domain
235R3H domain
224Amidase
112BAH domain
415AN1-like Zinc finger
112Hsp33 protein
336Peptidase family M13
336Peptidase family M3
7815Peptidase family M1 domain
224Peptidase family M41
347Peptidase family M48
145NHL repeat
112Acetohydroxy acid isomeroreductase, catalytic domain
235Low molecular weight phosphotyrosine protein phosphatase
112MAGE family
145Leishmanolysin
549Eukaryotic porin
11Leucine rich repeat N-terminal domain
224GRIP domain
336Skp1 family, dimerisation domain
448Cytidylyltransferase-like
11GA module
112Pyroglutamyl peptidase
213PUA domain
112Class-II DAHP synthetase family
224LysM domain
6511S4 domain
112PWI domain
325IBR domain, a half RING-finger domain
112Type I 3-dehydroquinase
112Shikimate / quinate 5-dehydrogenase
465298Transmembrane amino acid transporter protein
112Frataxin-like domain
123GXGXG motif
112FAD binding domain
112
112V-type ATPase 116kDa subunit family
2810Transposase
224Glycosyl transferase family 8
112Phosphoribosyl-AMP cyclohydrolase
112Phosphoribosyl-ATP pyrophosphohydrolase
161531Phosphatidylinositol-4-phosphate 5-Kinase
112Major Vault Protein repeat domain
112Phosphoadenosine phosphosulfate reductase family
224TruB family pseudouridylate synthase (N terminal domain)
112Respiratory-chain NADH dehydrogenase 51 Kd subunit
224ATP-NAD kinase
213Phosphate acetyl/butaryl transferase
224Iron-sulphur cluster biosynthesis
224Polysaccharide deacetylase
162137DHHC palmitoyltransferase
6511Glycosyl hydrolase family 47
131225PPR repeat
112Adenosylmethionine decarboxylase
71017CorA-like Mg2+ transporter protein
81220Cation efflux family
6713Peptidase family M20/M25/M40
224Bacterial extracellular solute-binding protein
121123Acyltransferase
141832MatE
8513DnaJ C terminal domain
336Fumarylacetoacetate (FAA) hydrolase family
123Spermine/spermidine synthase domain
111627FAD binding domain
347Natural resistance-associated macrophage protein
8715PAP2 superfamily
224Aminomethyltransferase folate-binding domain
5510MaoC like domain
213Adenylylsulphate kinase
8614G-patch domain
6410Putative tRNA binding domain
212243GAF domain
3366-phosphofructo-2-kinase
112NifU-like N terminal domain
549Flavin containing amine oxidoreductase
112AI-2E family transporter
448Cyclin M transmembrane N-terminal domain
112O-methyltransferase
112Glycine cleavage H-protein
213
112Ribosomal protein S27a
9918Adaptin N terminal region
336Protein phosphatase 2A regulatory B subunit (B56 family)
33Transposase DDE domain
76133'-5' exonuclease
11Proline dehydrogenase
224MutS domain I
224Peptide methionine sulfoxide reductase
213Hpt domain
11Ribosomal protein L35
336Choline/ethanolamine kinase
112ATP phosphoribosyltransferase
112Phosphotransferase enzyme family
112SelR domain
112Methylmalonyl-CoA mutase
224Chitin synthase
112Conserved region in glutamate synthase
5494'-phosphopantetheinyl transferase superfamily
224Peptidase C13 family
448Eukaryotic initiation factor 4E
112Ribosomal protein L32
336CobQ/CobB/MinD/ParA nucleotide binding domain
112Myo-inositol-1-phosphate synthase
101020Macro domain
112Ribosomal protein S27
81119Glycosyl hydrolase family 12
112Metalloenzyme superfamily
224Proteolipid membrane potential modulator
213SOR/SNZ family
112Riboflavin kinase
538Rhomboid family
5510Sodium/calcium exchanger protein
224Queuine tRNA-ribosyltransferase
549UTP--glucose-1-phosphate uridylyltransferase
112Transcriptional regulator
224Smr domain
112IPP transferase
213Cobalamin-independent synthase, Catalytic domain
134BolA-like protein
112Ham1 family
5510FtsJ-like methyltransferase
11Quinolinate phosphoribosyl transferase, C-terminal domain
7714Nucleoside transporter
9918Patatin-like phospholipase
112Dienelactone hydrolase family
181634STAS domain
33Large-conductance mechanosensitive channel, MscL
224Poly A polymerase head domain
112ATP-sulfurylase
224Importin beta binding domain
325Toprim domain
192241MYND finger
213A20-like zinc finger
10818Acyl-CoA oxidase
101626Acyltransferase family
123Sodium Bile acid symporter family
1123-dehydroquinate synthase
325Galactosyltransferase
7815Lipase (class 3)
112Ribosome recycling factor
112UreD urease accessory protein
213Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
112Ribosomal L22e protein family
112Ribosomal L27e protein family
112Ribosomal L28e protein family
11Ribosomal L29e protein family
213Ribosomal L37ae protein family
112Ribosomal L38e protein family
448Alternative oxidase
112DeoC/LacD family aldolase
191635Ferric reductase like transmembrane component
213MraW methylase family
437snoRNA binding domain, fibrillarin
112[2Fe-2S] binding domain
336Surp module
123AICARFT/IMPCHase bienzyme
11LysE type translocator
1125-formyltetrahydrofolate cyclo-ligase family
112ATP synthase subunit D
112Chorismate mutase type II
11GPCR proteolysis site, GPS, motif
134IPT/TIG domain
22FG-GAP repeat
112Transglutaminase-like superfamily
9817ACT domain
213FF domain
224NAC domain
235Proteasome/cyclosome repeat
6612START domain
112MOZ/SAS family
112Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
11Retinoblastoma-associated protein B domain
123Retinoblastoma-associated protein A domain
224Putative diphthamide synthesis protein
11Domain of unknown function UPF0086
112AMMECR1
224Domain found in IF2B/IF5
112Memo-like protein
112RNase P subunit p30
224Iron-sulfur cluster assembly protein
11RNA 2'-phosphotransferase, Tpt1 / KptA family
112Uncharacterised protein family UPF0047
112DNA primase small subunit
11Rpp14/Pop5 family
112Diphthamide synthase
112Putative heavy-metal-binding
112Ribosomal protein L37e
5510Nucleotidyltransferase domain
112eIF-6 family
252752Glycosyl hydrolase family 3 C-terminal domain
112Deoxyhypusine synthase
224Prefoldin subunit
22SRP19 protein
11Cobalamin adenosyltransferase
4711Sulfite exporter TauE/SafE
991850S ribosome-binding GTPase
11Mut7-C RNAse domain
11Ribosomal protein L14
11Uncharacterised protein family UPF0052
549Protein of unknown function DUF89
11TRAM domain
112Integral membrane protein DUF92
112ArgJ family
549DJ-1/PfpI family
448HD domain
112MoaC family
213Hydantoinase/oxoprolinase
213Protein of unknown function DUF111
1123-octaprenyl-4-hydroxybenzoate carboxy-lyase
8715Amidohydrolase family
123tRNA-methyltransferase O
112Peptidyl-tRNA hydrolase PTH2
11Double-stranded DNA-binding domain
112Mitochondrial biogenesis AIM24
112VIT family
112ATP synthase (F/14-kDa) subunit
112ATP synthase (E/31 kDa) subunit
112ATP synthase (C/AC39) subunit
112Translin family
112TFIIE alpha subunit
112N2,N2-dimethylguanosine tRNA methyltransferase
112LD-carboxypeptidase N-terminal domain
325eIF4-gamma/eIF5/eIF2-epsilon
336RyR domain
224SCP-2 sterol transfer family
7613SAP domain
151429RWP-RK domain
213CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
101222Glycosyl hydrolase family 30 TIM-barrel domain
112Palmitoyl protein thioesterase
22460Kd inner membrane protein
11Josephin
11SURF1 family
11DAD family
112Phosducin
112RHO protein GDP dissociation inhibitor
112Phosphatidylinositol transfer protein
112Aminopeptidase I zinc metalloprotease (M18)
123X-Pro dipeptidyl-peptidase (S15 family)
11Uncharacterized protein family UPF0054
224Permease for cytosine/purines, uracil, thiamine, allantoin
448
448TAZ zinc finger
213Nuclear transport factor 2 (NTF2) domain
10818Beige/BEACH domain
347DENN (AEX-3) domain
336MGS-like domain
112Repair protein Rad1/Rec1/Rad17
213Rap/ran-GAP
549Sir2 family
224Zn-finger in ubiquitin-hydrolases and other protein
123Kinase associated domain 1
224RNA polymerases M/15 Kd subunit
112UvrB/uvrC motif
112Cytochrome C1 family
6713PAZ domain
5611Piwi domain
112TRAF-type zinc finger
123AT hook motif
8816Formin Homology 2 Domain
224HAT (Half-A-TPR) repeat
325ATP-dependent protease La (LON) substrate-binding domain
112PXA domain
11ParB-like nuclease domain
11Regulatory subunit of type II PKA R-subunit
336SWIB/MDM2 domain
448Vacuolar sorting protein 9 (VPS9) domain
224WH2 motif
5510Putative zinc finger in N-recognin (UBR box)
112Villin headpiece domain
347Dynamin GTPase effector domain
123GYF domain
235BTB/POZ domain
224Methylenetetrahydrofolate reductase
112ML domain
224ATP-grasp domain
112Thymidylate kinase
192039PA domain
112Transcriptional Coactivator p15 (PC4)
336Phospholipase/Carboxylesterase
112
112Proteasome activator pa28 beta subunit
112Iron hydrogenase small subunit
325FAT domain
6511FATC domain
6612Guanylate-binding protein, N-terminal domain
112Transcription initiation factor IID, 18kD subunit
112Amidinotransferase
112Linear amide C-N hydrolases, choloylglycine hydrolase family
112Signal recognition particle 14kD protein
112Transcription initiation factor IID, 31kD subunit
22Cytochrome oxidase c subunit VIb
123HORMA domain
224B12 binding domain
123E2F/DP family winged-helix DNA-binding domain
11Ubiquinol-cytochrome C reductase hinge protein
11Mitochondrial glycoprotein
6511OTU-like cysteine protease
112Glycine cleavage system P-protein
112Cytidylyltransferase
123Mycolic acid cyclopropane synthetase
61016Trehalose-phosphatase
213Cell division protein 48 (CDC48), N-terminal domain
77141,3-beta-glucan synthase component
112Threonylcarbamoyl adenosine biosynthesis protein TsaE
9918JmjC domain, hydroxylase
112Anion-transporting ATPase
224jmjN domain
336SacI homology domain
224Putative methyltransferase
112MoaE protein
112Seryl-tRNA synthetase N-terminal domain
448
112Ribosomal silencing factor during starvation
11Chromate transporter
112Conserved carboxylase domain
112Quinolinate synthetase A protein
224Lecithin:cholesterol acyltransferase
549Transferase family
437Patched family
61016RecF/RecN/SMC N terminal domain
7411Tim17/Tim22/Tim23/Pmp24 family
224Met-10+ like-protein
6511
112CLN3 protein
112
6511CobW/HypB/UreG, nucleotide-binding domain
151530MORN repeat
112CoA-transferase family III
224Oligosaccharyl transferase STT3 subunit
123CPBP intramembrane metalloprotease
151429Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
242246ZIP Zinc transporter
235mTERF
314CrcB-like protein, Camphor Resistance (CrcB)
213Hydantoinase B/oxoprolinase
112NAD synthase
3143-oxo-5-alpha-steroid 4-dehydrogenase
11Maf-like protein
224Ketopantoate hydroxymethyltransferase
213Phenazine biosynthesis-like protein
112Pantoate-beta-alanine ligase
437Homocysteine S-methyltransferase
11D-Tyr-tRNA(Tyr) deacylase
224Uncharacterised ACR, YagE family COG1723
11SOS response associated peptidase (SRAP)
112Putative RNA methyltransferase
112Uroporphyrinogen-III synthase HemD
112B12 binding domain
123Cytochrome oxidase assembly protein
224CoA binding domain
112SCO1/SenC
325Putative S-adenosyl-L-methionine-dependent methyltransferase
112GatB domain
112Fic/DOC family
123Phosphatidylserine decarboxylase
6511Taurine catabolism dioxygenase TauD, TfdA family
112Paired amphipathic helix repeat
11Methyltransferase TYW3
336Pirin
11Lipid-A-disaccharide synthetase
448Glucokinase
7512Na+/Pi-cotransporter
112Uncharacterized ACR, YdiU/UPF0061 family
11N-terminal domain of galactosyltransferase
235Calcium-dependent channel, 7TM region, putative phosphate
549
112CDC45-like protein
4610Copper amine oxidase, N2 domain
4610Copper amine oxidase, N3 domain
22