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PFAM Domains • Citeromyces matritensis NRRL Y-2407
Annotations/GenomesAshgo1_1Citma1Kazaf1Klula1Nakbac1Nakdel1Pacta1_2Sacce1Torde1Zygro1TotalAnnotation Description
PFAMs
4,5397,5205,0834,7745,7945,9285,2225,5354,7984,79953,992
35423434353534333534351ATPase family associated with various cellular activities (AAA)
20233023222528312126249ABC transporter
444444444440ATP synthase alpha/beta family, nucleotide-binding domain
13211614151415161313150Elongation factor Tu GTP binding domain
7148876976880Helix-loop-helix DNA-binding domain
652222222631Hsp20/alpha crystallin family
91111991291499102Hsp70 protein
859864988873KH domain
11111117SH2 domain
20122120161820222021190SH3 domain
1117101099109910104Actin
15519155414181516126Ankyrin repeat
767776877769ADP-ribosylation factor family
71185699741076Eukaryotic aspartyl protease
442422332329Cyclic nucleotide-binding domain
11Cytochrome b/b6/petB
111111121111Cytochrome c
225232223225Double-stranded RNA binding motif
13113111211111284EF hand
1111111111104Fe-4S binding domain
1221129Fibronectin type III domain
122222322220Globin
354433565543Glutathione S-transferase, C-terminal domain
133312231120Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
644545586552Homeodomain
11Laminin EGF domain
333333336333lactate/malate dehydrogenase, NAD binding domain
344355353338Myosin head (motor domain)
343533533335Cytochrome P450
91143112881111099611489891,042Protein kinase domain
696657796869Pyridine nucleotide-disulphide oxidoreductase
20242321252324242020224Ras family
474334744444Response regulator receiver domain
111111111110RNase H
42564741343949484242440RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
1111116Retroviral aspartyl protease
111111116Reverse transcriptase (RNA-dependent DNA polymerase)
221111212316Copper/zinc superoxide dismutase (SODC)
121111111111Iron/manganese superoxide dismutases, alpha-hairpin domain
344346544441Subtilase family
13342222181625342616226Sugar (and other) transporter
8108811107107685Thioredoxin
1111116Trypsin
344333543335Tubulin/FtsZ family, GTPase domain
33184429131833382523274Zinc finger, C2H2 type
25325265331222825193Zinc finger, C3HC4 type (RING finger)
3185433463554Zinc knuckle
333233333329Protein-tyrosine phosphatase
112Somatotropin hormone family
16151418131326132119168short chain dehydrogenase
822211510819171111142Zinc-binding dehydrogenase
262222322225Thiolase, N-terminal domain
222222223221Beta-ketoacyl synthase, N-terminal domain
2422113222212Fe-2S iron-sulfur cluster binding domain
122112351119Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
797778898777Glutamine amidotransferase class-I
10141110111110101010107TCP-1/cpn60 chaperonin family
11ATP synthase A chain
111111111110Glutamine synthetase, catalytic domain
111111111110Triosephosphate isomerase
813910141471299105E1-E2 ATPase
10101210121211101010107Core histone H2A/H2B/H3/H4
161311184127Alpha amylase, catalytic domain
111111111110Phorbol esters/diacylglycerol binding domain (C1 domain)
473534344340Bacterial transferase hexapeptide (six repeats)
384355433341tRNA synthetases class I (I, L, M and V)
9131612121511131111123Cyclin, N-terminal domain
11Carboxylesterase family
454444444441DNA polymerase family B
334343433333ATP synthase subunit C
11111212111Peroxidase
11NADH dehydrogenase
18221717171818211918185Calcineurin-like phosphoesterase
242153241327Cellulase (glycosyl hydrolase family 5)
666666666660tRNA synthetases class II (D, K and N)
27463229303033343433328Mitochondrial carrier protein
11151311131112111011118Aminotransferase class I and II
76986510118979Phosphoribosyl transferase domain
61186761186675Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
122111111112Phosphoglycerate kinase
263233232228Ribosomal protein S4/S9 N-terminal domain
223232232223Ribosomal protein S12/S23
112Bacterial regulatory helix-turn-helix proteins, AraC family
121111111111Chaperonin 10 Kd subunit
991086791191088C2 domain
18121814151517241413160PH domain
5797910785471bZIP transcription factor
617810991099895Aldehyde dehydrogenase family
42514657403759534148474Fungal Zn(2)-Cys(6) binuclear cluster domain
1024811761671111111Cytochrome b5-like Heme/Steroid binding domain
213Oxidoreductase molybdopterin binding domain
6119777887777Oxidoreductase NAD-binding domain
17211817171718171717176SNF2 family N-terminal domain
222222222220Ribosomal protein S7p/S5e
12151312141215141313133Ubiquitin-conjugating enzyme
677677676665Isocitrate/isopropylmalate dehydrogenase
223232232223Ribosomal Proteins L2, RNA binding domain
111111121111Hsp90 protein
232222222221Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111111111110Dihydrofolate reductase
313321232222Cysteine-rich secretory protein family
111111111110Ribosomal protein S3, C-terminal domain
11Trypsin and protease inhibitor
2222222222202-oxoacid dehydrogenases acyltransferase (catalytic domain)
121221223521Catalase
11114UDP-glucoronosyl and UDP-glucosyl transferase
373643447950Aminotransferase class-III
222222222220Ribosomal protein S19
111111111110DNA gyrase B
646467477556Thiamine pyrophosphate enzyme, central domain
343333433332Lyase
122222232220Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
111111111110Adenylate and Guanylate cyclase catalytic domain
111111111110ATP synthase delta (OSCP) subunit
111111111110Orotidine 5'-phosphate decarboxylase / HUMPS family
111111111110Indole-3-glycerol phosphate synthase
121122121114Pyruvate kinase, barrel domain
676555866761Kinesin motor domain
21252021222224212121218DnaJ domain
14161414141414141414142Proteasome subunit
214234343127Major intrinsic protein
121111111111ATP synthase
1111111111103'5'-cyclic nucleotide phosphodiesterase
131111111112Profilin
221222122117Ribosomal protein L22p/L17e
222222232221Ribosomal protein L14p/L23e
8710887799881Ubiquitin family
343343433434Cofilin/tropomyosin-type actin-binding protein
11212212111414-3-3 protein
1111111119Alkaline phosphatase
131111111112Zinc carboxypeptidase
52813981013161012124Aldo/keto reductase family
13714137914151213117Myb-like DNA-binding domain
335344243334Forkhead domain
131112110Glycosyl hydrolases family 32 N-terminal domain
131122111114Ribosomal protein L16p/L10e
213222232221Ribosomal protein S14p/S29e
223334343330FKBP-type peptidyl-prolyl cis-trans isomerase
113243232223Glutathione peroxidase
222122213
4410554876760Flavodoxin
11111117Calreticulin family
373433433538Aminotransferase class-V
112122121114Ribonucleotide reductase, small chain
33473633393932563534384DEAD/DEAH box helicase
58736359605956796259628Helicase conserved C-terminal domain
121111111111EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222222220Ribosomal protein L23
111111111110Pyridoxal-dependent decarboxylase, C-terminal sheet domain
222222232221Ribosomal protein L5
32222322220Pyridoxal-dependent decarboxylase conserved domain
213223132221Citrate synthase, C-terminal domain
446544566549GHMP kinases N terminal domain
565556675555Biotin carboxylase, N-terminal domain
111111111110Tryptophan synthase alpha chain
788876677872Pyridoxal-phosphate dependent enzyme
667767877768NUDIX domain
242433343331pfkB family carbohydrate kinase
112Glycosyl hydrolases family 28
222222222220Ribosomal protein L3
223222232222Ribosomal protein L11, RNA binding domain
912121012131212109111Histidine phosphatase superfamily (branch 1)
131111111112Thymidylate synthase
444444444440ATP synthase alpha/beta chain, C terminal domain
444424544439Calponin homology (CH) domain
533433475542Glutamine amidotransferases class-II
222222522223Ribosomal protein S15
111122111112Fructose-1-6-bisphosphatase, N-terminal domain
223211222219Ribonucleotide reductase, all-alpha domain
223222232222Ribosomal protein S2
225235243331SRF-type transcription factor (DNA-binding and dimerisation domain)
6796878106673GATA zinc finger
20262125161622242220212Amino acid permease
222222222220Prolyl oligopeptidase family
333233343330Ribosomal protein L30p/L7e
161621463131Histidine phosphatase superfamily (branch 2)
415Respiratory-chain NADH dehydrogenase, 30 Kd subunit
445444444441Aconitase family (aconitate hydratase)
213433433329Glycosyl hydrolases family 17
222222222220Ribosomal protein S5, N-terminal domain
111111111110Nucleoside diphosphate kinase
222222222220Ribosomal protein S10p/S20e
264265431235Arrestin (or S-antigen), N-terminal domain
111111111110Phosphoglucose isomerase
121111111111Carbohydrate phosphorylase
121122222116SecY translocase
112Respiratory-chain NADH dehydrogenase, 49 Kd subunit
243323333329Ribosomal protein L6
333333333330Polyprenyl synthetase
274234452336Hexokinase
343344333333Dynamin family
121111111111Transcription factor TFIID (or TATA-binding protein, TBP)
121111311113Rieske [2Fe-2S] domain
33Proton-conducting membrane transporter
666667786664Biotin-requiring enzyme
233223222223Phosphofructokinase
222222232221Ribosomal protein S17
112111221113Hydroxymethylglutaryl-coenzyme A reductase
343333433433FGGY family of carbohydrate kinases, N-terminal domain
233232233326Enoyl-CoA hydratase/isomerase
223222232222Ribosomal protein S9/S16
222222232322Transcription factor TFIIB repeat
686666766663Cytidine and deoxycytidylate deaminase zinc-binding region
112Molybdopterin oxidoreductase
222222222220Chromo (CHRromatin Organisation MOdifier) domain
111111111110Phosphatidylinositol-specific phospholipase C, Y domain
111111111110Phosphatidylinositol-specific phospholipase C, X domain
233223544634D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
111111211111Malic enzyme, N-terminal domain
1121211211136-phosphogluconate dehydrogenase, C-terminal domain
342333334432Multicopper oxidase
565445555549WW domain
222222222220Ribosomal RNA adenine dimethylase
3485292104451Yeast PIR protein repeat
791058274838390887978841WD domain, G-beta repeat
352433433434Heavy-metal-associated domain
343333333331Adenylate kinase
331234234227Phosphoglucomutase/phosphomannomutase, C-terminal domain
232333323226Ribosomal protein S8
111123121114Ribosomal protein S11
335353343335LIM domain
11112311213Regulator of chromosome condensation (RCC1) repeat
233222232223Ribosomal protein S13/S18
112
222222222220chorismate binding enzyme
57655455555260s Acidic ribosomal protein
434433444437Prenyltransferase and squalene oxidase repeat
526646686655Protein kinase C terminal domain
111111111110Single-strand binding protein family
11112221112S-adenosylmethionine synthetase, N-terminal domain
81198899108888Bromodomain
112Acyl-CoA dehydrogenase, C-terminal domain
13131612141615161413142Ubiquitin carboxyl-terminal hydrolase
1111111119Ribosomal protein L36
111111111211Ribonuclease T2 family
483444454444HSF-type DNA-binding
222222222220SRP54-type protein, GTPase domain
342432432330Serine carboxypeptidase
8108888898883Phosphatidylinositol 3- and 4-kinase
112111121112Transketolase, thiamine diphosphate binding domain
113133132321Inositol monophosphatase family
445446476448Glutaredoxin
212222122218Isocitrate lyase family
233232222223Serine hydroxymethyltransferase
1113Iron-containing alcohol dehydrogenase
242233222224Ribosomal protein L10
46421373434KOW motif
141111111113Ribosomal protein L34
222233222222RF-1 domain
27411812127Sodium:solute symporter family
111111111110Imidazoleglycerol-phosphate dehydratase
1111111119DNA polymerase family A
111122151116IMP dehydrogenase / GMP reductase domain
112111111111Glucose-6-phosphate dehydrogenase, NAD binding domain
667677676664Protein phosphatase 2C
231223122119Nucleotidyl transferase
1111111119Carbonic anhydrase
141123121117Phosphoribulokinase / Uridine kinase family
591611613437Fatty acid desaturase
456666666657MutS domain V
111111111110Delta-aminolevulinic acid dehydratase
241311413323Arginase family
676666666661MCM P-loop domain
121111111111Squalene/phytoene synthase
891291212714810101FHA domain
8997999108886AMP-binding enzyme
222222222220G-protein alpha subunit
757664676660HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
121111311113His Kinase A (phospho-acceptor) domain
232222322222Armadillo/beta-catenin-like repeat
17101818111316211919162Tetratricopeptide repeat
111211121112Ion transport protein
111111111110DNA gyrase/topoisomerase IV, subunit A
961189891010888BRCA1 C Terminus (BRCT) domain
434433444437Glycosyl transferases group 1
232322122221Glycosyl transferase family 2
1111111119linker histone H1 and H5 family
111111111110Ribosomal protein L7/L12 C-terminal domain
222222222220CoA-ligase
233223322224Phosphopantetheine attachment site
232222222221Formyl transferase
5116577766666Metallopeptidase family M24
10311823131191080Leucine Rich Repeat
10615135716151414115alpha/beta hydrolase fold
353333333332RNA polymerase Rpb2, domain 6
221322211218PB1 domain
121111211112Staphylococcal nuclease homologue
6985119786675Rab-GTPase-TBC domain
112Tudor domain
131111111112WH1 domain
332322223325Zinc finger, ZZ type
112111222215HRDC domain
7668557106666CBS domain
242222232223Ribosomal protein L13
232222231221Ribosomal protein L4/L1 family
11Clp protease
454444344440S1 RNA binding domain
111115HIUase/Transthyretin family
443434444438AhpC/TSA family
464444444442tRNA synthetases class I (W and Y)
332422232225UvrD/REP helicase N-terminal domain
7129587697777Rhodanese-like domain
123Universal stress protein family
111010128812131211107Acetyltransferase (GNAT) family
1111111119SecE/Sec61-gamma subunits of protein translocation complex
111111111110C-terminal regulatory domain of Threonine dehydratase
222222222220AIR synthase related protein, N-terminal domain
878977998880tRNA synthetase class II core domain (G, H, P, S and T)
222222222220SpoU rRNA Methylase family
232222322222Tetrapyrrole (Corrin/Porphyrin) Methylases
111111111110Glycosyl transferase family, a/b domain
1111122110PDZ domain
121211211214Class II Aldolase and Adducin N-terminal domain
11Influenza non-structural protein (NS1)
494443454445Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
444444444440Fes/CIP4, and EFC/F-BAR homology domain
415221233225IQ calmodulin-binding motif
242222222222Phosphoinositide 3-kinase family, accessory domain (PIK domain)
212211222217Phospholipase D Active site motif
1141231123Regulator of G protein signaling domain
244344343334GTPase-activator protein for Ras-like GTPase
454455444443RasGEF domain
444454444441RasGEF N-terminal motif
881089108118888RhoGAP domain
242244332228RhoGEF domain
443433334334SPRY domain
333333333330RNA polymerase Rpb1, domain 2
22144215Flocculin repeat
131111111112Guanylate kinase
354345443338Gelsolin repeat
7811787898780UBA/TS-N domain
1112131010911131213114PHD-finger
111111118GGL domain
555555554549HECT-domain (ubiquitin-transferase)
112Helix-hairpin-helix motif
112112121113MSP (Major sperm protein) domain
215233234328Ribonuclease III domain
262323332329Region in Clathrin and VPS
333333333330RanBP1 domain
111111111110PPIC-type PPIASE domain
111111111110Zn-finger in Ran binding protein and others
1066664978870Zinc finger C-x8-C-x5-C-x3-H type (and similar)
112B-box zinc finger
1011117111812121194F-box domain
112122122216Elongation factor 1 gamma, conserved domain
112Calpain family cysteine protease
223233232224Copper fist DNA binding domain
566477565556CRAL/TRIO domain
131222211116BTB/POZ domain
111115Inhibitor of Apoptosis domain
221111311114Voltage gated chloride channel
111111111110Caspase domain
1111111119GDSL-like Lipase/Acylhydrolase
111111111110Poly-adenylate binding protein, unique domain
111111111110POLO box duplicated region
18663152Seripauperin and TIP1 family
11NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
79788913108786ABC transporter transmembrane region
202426Integrase core domain
344333333332FAD binding domain
11Condensation domain
111111111110S-adenosyl-L-homocysteine hydrolase, NAD binding domain
112HAMP domain
242222232223ribosomal L5P family C-terminus
3112331243DUP family
788778877875Insulinase (Peptidase family M16)
222222222220Dehydrogenase E1 component
111111111110Lumazine binding domain
677666676663Elongation factor G C-terminus
444546464546HMGL-like
553544555546DnaJ central domain
282244232231Ribosomal protein L1p/L10e family
333444254335Cation transporting ATPase, C-terminus
455565375449Cation transporter/ATPase, N-terminus
1111111119dUTPase
445444444441Aconitase C-terminal domain
334344343334Amino acid kinase family
1111111