PFAM Domains • Vararia minispora EC-137 v1.0
Annotations/GenomesAurvu1Clapy1Densp1Hetan2Lenvul1Lopni1Ricme1Stehi1Varmin1TotalAnnotation Description
PFAMs
8,4328,4878,0217,7117,7349,9039,8479,0059,16678,306
444647424247474952416ATPase family associated with various cellular activities (AAA)
384234323457564835376ABC transporter
44444444436ATP synthase alpha/beta family, nucleotide-binding domain
171614161514141516137Elongation factor Tu GTP binding domain
111211121311131311107Helix-loop-helix DNA-binding domain
61096612145775Hsp20/alpha crystallin family
1015810812710787Hsp70 protein
98879888873KH domain
112Ribulose bisphosphate carboxylase large chain, catalytic domain
111111118SH2 domain
272825262733362915246SH3 domain
131112111212111212106Actin
333235512956733412355Ankyrin repeat
677771097767ADP-ribosylation factor family
443073282339403630343Eukaryotic aspartyl protease
33333334328Cyclic nucleotide-binding domain
21112221113Cytochrome c
95767131211575Double-stranded RNA binding motif
18191715151819171139EF hand
11111221104Fe-4S binding domain
112111119Fibronectin type III domain
11Globin
1281211814131610104Glutathione S-transferase, C-terminal domain
1111111119Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
11Hemopexin
17108811989686Homeodomain
1113Laminin EGF domain
22422222220lactate/malate dehydrogenase, NAD binding domain
112Lipocalin / cytosolic fatty-acid binding protein family
65555667651Myosin head (motor domain)
1672721521341081831752041671,562Cytochrome P450
2171951611321601922041571401,558Protein kinase domain
172215152221202211165Pyridine nucleotide-disulphide oxidoreductase
262623222425242527222Ras family
888781112141086Response regulator receiver domain
301119911118134116RNase H
697563677180806557627RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
10111Reverse transcriptase (RNA-dependent DNA polymerase)
11111112110Copper/zinc superoxide dismutase (SODC)
32332222221Iron/manganese superoxide dismutases, alpha-hairpin domain
1636552321254Subtilase family
263929322944413942321Sugar (and other) transporter
91410109121311896Thioredoxin
55565665548Tubulin/FtsZ family, GTPase domain
4553633534von Willebrand factor type A domain
766264896260615514543Zinc finger, C2H2 type
64726058688882568556Zinc finger, C3HC4 type (RING finger)
141414154122623276290Zinc knuckle
22222222218Protein-tyrosine phosphatase
11Zinc finger, C4 type (two domains)
11612013058104161158136911,074short chain dehydrogenase
413760374381807851508Zinc-binding dehydrogenase
45556555747Thiolase, N-terminal domain
29344658647Beta-ketoacyl synthase, N-terminal domain
333433331262Fe-2S iron-sulfur cluster binding domain
1111111119Enolase, C-terminal TIM barrel domain
97777777866Glutamine amidotransferase class-I
10101110101010101091TCP-1/cpn60 chaperonin family
112ATP synthase A chain
33333444330Glutamine synthetase, catalytic domain
12111111110Triosephosphate isomerase
121412141515151118126E1-E2 ATPase
191919162214151613153Core histone H2A/H2B/H3/H4
112Copper binding proteins, plastocyanin/azurin family
689776613769Alpha amylase, catalytic domain
66556766451Phorbol esters/diacylglycerol binding domain (C1 domain)
33342334227Bacterial transferase hexapeptide (six repeats)
33333333428tRNA synthetases class I (I, L, M and V)
14129101015151012107Cyclin, N-terminal domain
252626191639373233253Carboxylesterase family
44434444435DNA polymerase family B
33333333327ATP synthase subunit C
8981213191975100Peroxidase
271248911246Beta-lactamase
64645666447C-5 cytosine-specific DNA methylase
322828232631332820249Calcineurin-like phosphoesterase
131211111013131516114Cellulase (glycosyl hydrolase family 5)
55555556546tRNA synthetases class II (D, K and N)
363736363538383736329Mitochondrial carrier protein
11recA bacterial DNA recombination protein
141314141513132014130Aminotransferase class I and II
66676775454Phosphoribosyl transferase domain
131313131413131313118Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111111119Phosphoglycerate kinase
22222222218Ribosomal protein S4/S9 N-terminal domain
22222222218Ribosomal protein S12/S23
11111112110Chaperonin 10 Kd subunit
151518191415141712139C2 domain
21201722202120208169PH domain
64556547850bZIP transcription factor
212320141814142222168Aldehyde dehydrogenase family
627065585699988547640Fungal Zn(2)-Cys(6) binuclear cluster domain
272422232621202522210Cytochrome b5-like Heme/Steroid binding domain
13222225221Oxidoreductase molybdopterin binding domain
887107898772Oxidoreductase NAD-binding domain
252627212624222723221SNF2 family N-terminal domain
22222222218Ribosomal protein S7p/S5e
212121212121212121189Ubiquitin-conjugating enzyme
555105555550Isocitrate/isopropylmalate dehydrogenase
22222222218Ribosomal Proteins L2, RNA binding domain
22222222218Hsp90 protein
22222332220Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111111119Dihydrofolate reductase
112Chitin recognition protein
11111113313Cysteine-rich secretory protein family
1111111119Ribosomal protein S3, C-terminal domain
471311214648Cupin
343335723332-oxoacid dehydrogenases acyltransferase (catalytic domain)
22232333222Catalase
1111111119Disintegrin
1122118UDP-glucoronosyl and UDP-glucosyl transferase
55755556548Aminotransferase class-III
22222222218Ribosomal protein S19
1111111119DNA gyrase B
22222222218Thiamine pyrophosphate enzyme, central domain
33333333327Lyase
11111112110Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11211112111Adenylate and Guanylate cyclase catalytic domain
1111111119ATP synthase delta (OSCP) subunit
1111111119Orotidine 5'-phosphate decarboxylase / HUMPS family
11211341216Indole-3-glycerol phosphate synthase
22132243322Aromatic amino acid lyase
1111111119Pyruvate kinase, barrel domain
10109910998983Kinesin motor domain
303033333034313428283DnaJ domain
151414141415151414129Proteasome subunit
87636995760Major intrinsic protein
1111111119ATP synthase
43222113321Glycosyl hydrolase family 1
11111111193'5'-cyclic nucleotide phosphodiesterase
11Protease inhibitor/seed storage/LTP family
12111111110Profilin
11121112212Ribosomal protein L22p/L17e
23222222118Ribosomal protein L14p/L23e
141716191516171513142Ubiquitin family
76556556550Cofilin/tropomyosin-type actin-binding protein
3222224222114-3-3 protein
2212232216Alkaline phosphatase
11111112110Zinc carboxypeptidase
494956424675746441496Aldo/keto reductase family
11121312121313117104Myb-like DNA-binding domain
6555613135765Forkhead domain
111115Glycosyl hydrolases family 32 N-terminal domain
11111111210Ribosomal protein L16p/L10e
23222221218Ribosomal protein S14p/S29e
34433774439FKBP-type peptidyl-prolyl cis-trans isomerase
2222222216
5756410105557Flavodoxin
11Protamine P1
112Tropomyosin
11111211110Calreticulin family
25331787238Common central domain of tyrosinase
66776668759Aminotransferase class-V
42322375230Ribonucleotide reductase, small chain
655449436364515445488DEAD/DEAH box helicase
1039389779998909172812Helicase conserved C-terminal domain
1111116Fructose-bisphosphate aldolase class-I
11111112110EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
23212222218Ribosomal protein L23
1111111119Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1111111119Ribosomal protein L5
54554335539Pyridoxal-dependent decarboxylase conserved domain
33333333428Citrate synthase, C-terminal domain
56656555548GHMP kinases N terminal domain
66666676655Biotin carboxylase, N-terminal domain
1111111119Tryptophan synthase alpha chain
987889910977Pyridoxal-phosphate dependent enzyme
141617171616151615142NUDIX domain
64544555543pfkB family carbohydrate kinase
32682131317670Glycosyl hydrolases family 28
22222222218Ribosomal protein L3
21222222217Ribosomal protein L11, RNA binding domain
9710877710873Histidine phosphatase superfamily (branch 1)
11111111210Thymidylate synthase
44444444436ATP synthase alpha/beta chain, C terminal domain
55445444237Calponin homology (CH) domain
55555556243Glutamine amidotransferases class-II
22222672227Ribosomal protein S15
3294113139963Thaumatin family
14111111112Fructose-1-6-bisphosphatase, N-terminal domain
11111122111Ribonucleotide reductase, all-alpha domain
23222221218Ribosomal protein S2
22222223219SRF-type transcription factor (DNA-binding and dimerisation domain)
101099111516128100GATA zinc finger
23332419232525309211Amino acid permease
109551312109780Prolyl oligopeptidase family
11111221212Ribosomal protein L30p/L7e
10141010101212149101Histidine phosphatase superfamily (branch 2)
1111111119Respiratory-chain NADH dehydrogenase, 30 Kd subunit
46434664441Aconitase family (aconitate hydratase)
63224566438Glycosyl hydrolase family 10
11111221111Glycosyl hydrolases family 17
22222112216Ribosomal protein S5, N-terminal domain
22222222218Nucleoside diphosphate kinase
2222211214Tetraspanin family
11Galactoside-binding lectin
13111222215Ribosomal protein S10p/S20e
42432554332Arrestin (or S-antigen), N-terminal domain
111121111120Phosphoglucose isomerase
1111111119Carbohydrate phosphorylase
11111221212SecY translocase
1111111119Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222222218Ribosomal protein L6
53554448341Polyprenyl synthetase
22222222218Hexokinase
107978777870Dynamin family
11111112110Transcription factor TFIID (or TATA-binding protein, TBP)
33343445433Rieske [2Fe-2S] domain
11Phytochrome region
787888107871Biotin-requiring enzyme
1111111119Phosphofructokinase
22222222218Ribosomal protein S17
11111211211Hydroxymethylglutaryl-coenzyme A reductase
43343443331FGGY family of carbohydrate kinases, N-terminal domain
77889888770Enoyl-CoA hydratase/isomerase
32222222219Ribosomal protein S9/S16
22233442224Transcription factor TFIIB repeat
67777997665Cytidine and deoxycytidylate deaminase zinc-binding region
1111111119Molybdopterin oxidoreductase
16612219121496105Chromo (CHRromatin Organisation MOdifier) domain
22222222218Phosphatidylinositol-specific phospholipase C, Y domain
22222222319Phosphatidylinositol-specific phospholipase C, X domain
1381169669674D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
33333333327Malic enzyme, N-terminal domain
111111121106-phosphogluconate dehydrogenase, C-terminal domain
1217620922232112142Multicopper oxidase
109888141611993WW domain
22222222218Ribosomal RNA adenine dimethylase
1531391331261361581701511451,311WD domain, G-beta repeat
44443444435Heavy-metal-associated domain
33363333330Adenylate kinase
21112111212Phosphoglucomutase/phosphomannomutase, C-terminal domain
21222111214Ribosomal protein S8
12211231215Ribosomal protein S11
66656776655LIM domain
156Matrixin
34324344431Regulator of chromosome condensation (RCC1) repeat
22222221217Ribosomal protein S13/S18
11REV protein (anti-repression trans-activator protein)
23222222219chorismate binding enzyme
4333355323160s Acidic ribosomal protein
44444444335Prenyltransferase and squalene oxidase repeat
77767888563Protein kinase C terminal domain
1111111119Single-strand binding protein family
1111111119S-adenosylmethionine synthetase, N-terminal domain
101010171112111011102Bromodomain
989810779774Acyl-CoA dehydrogenase, C-terminal domain
131414131313131414121Ubiquitin carboxyl-terminal hydrolase
11111117Ribosomal protein L36
22222333322Ribonuclease T2 family
54444554439HSF-type DNA-binding
23222222219SRP54-type protein, GTPase domain
1111111119Urease alpha-subunit, N-terminal domain
181420101326241411150Serine carboxypeptidase
98888898874Phosphatidylinositol 3- and 4-kinase
22222223219Transketolase, thiamine diphosphate binding domain
4211210Glycosyl hydrolases family 11
1113WHEP-TRS domain
22222222218Inositol monophosphatase family
54544754442Glutaredoxin
45333444232Isocitrate lyase family
1111111119Serine hydroxymethyltransferase
22422335427Iron-containing alcohol dehydrogenase
32222222219Ribosomal protein L10
44455445439KOW motif
11111121110Ribosomal protein L34
11Ribosomal protein L33
23333333326RF-1 domain
23333334226Sodium:solute symporter family
11111221111Imidazoleglycerol-phosphate dehydratase
21111111110DNA polymerase family A
1111111119IMP dehydrogenase / GMP reductase domain
1111111119Glucose-6-phosphate dehydrogenase, NAD binding domain
8910109111010885Protein phosphatase 2C
34333324328Nucleotidyl transferase
33555884546Carbonic anhydrase
1111111119Phosphoribulokinase / Uridine kinase family
131291114981511102Fatty acid desaturase
66666666654MutS domain V
1111111119Delta-aminolevulinic acid dehydratase
34333675539Arginase family
66667766656MCM P-loop domain
11111222213Squalene/phytoene synthase
91414101151461013178FHA domain
312637322334324129285AMP-binding enzyme
171512121314121514124G-protein alpha subunit
191620192321212215176HMG (high mobility group) box
555358810655His Kinase A (phospho-acceptor) domain
34443443332Armadillo/beta-catenin-like repeat
464835353952613315364Tetratricopeptide repeat
44323333429Ion transport protein
1111111119DNA gyrase/topoisomerase IV, subunit A
9118999910579BRCA1 C Terminus (BRCT) domain
66666666553Glycosyl transferases group 1
64444554440Glycosyl transferase family 2
21111118SAM domain (Sterile alpha motif)
54424234331linker histone H1 and H5 family
11111111210Ribosomal protein L7/L12 C-terminal domain
2554117Pectate lyase
1122219ribonuclease
1111111119Urease, gamma subunit
33333333327CoA-ligase
57974769862Phosphopantetheine attachment site
22222222218Formyl transferase
11101010111111131299Metallopeptidase family M24
15141415181313173122Leucine Rich Repeat
293438313351495011326alpha/beta hydrolase fold
33333333327RNA polymerase Rpb2, domain 6
54554554542PB1 domain
22222222218Staphylococcal nuclease homologue
991010101110101493Rab-GTPase-TBC domain
11211111110Tudor domain
12223432221WH1 domain
44354443334Zinc finger, ZZ type
1111111119HRDC domain
99998998878CBS domain
22222222218Ribosomal protein L13
22222222218Ribosomal protein L4/L1 family
1111111119Clp protease
43545444336S1 RNA binding domain
111111118HIUase/Transthyretin family
34443445435AhpC/TSA family
44444444436tRNA synthetases class I (W and Y)
1212111211UvrD/REP helicase N-terminal domain
44544555844Rhodanese-like domain
22222222218Universal stress protein family
344042263845473913324Acetyltransferase (GNAT) family
1111111119SecE/Sec61-gamma subunits of protein translocation complex
1111111119C-terminal regulatory domain of Threonine dehydratase
22222223219AIR synthase related protein, N-terminal domain
86666666555tRNA synthetase class II core domain (G, H, P, S and T)
11Phage integrase family
22222222218Tetrapyrrole (Corrin/Porphyrin) Methylases
11111111210Glycosyl transferase family, a/b domain
11131114114Class II Aldolase and Adducin N-terminal domain
33333222425Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
45556335440Fes/CIP4, and EFC/F-BAR homology domain
44553864241IQ calmodulin-binding motif
22222222218Phosphoinositide 3-kinase family, accessory domain (PIK domain)
43335443231Phospholipase D Active site motif
11111311212Regulator of G protein signaling domain
44444445437GTPase-activator protein for Ras-like GTPase
886789108872RasGEF domain
98788889772RasGEF N-terminal motif
151313121414131412120RhoGAP domain
141313131313131213117RhoGEF domain
44444444436SPRY domain
33344433330RNA polymerase Rpb1, domain 2
1111111119Guanylate kinase
54445555441Gelsolin repeat
9897910108777UBA/TS-N domain
141516151719191914148PHD-finger
1211112211GGL domain
57555555547HECT-domain (ubiquitin-transferase)
31211121113Helix-hairpin-helix motif
11111111210MSP (Major sperm protein) domain
97781010117473Ribonuclease III domain
22222332422Region in Clathrin and VPS
33323332325RanBP1 domain
22222333221PPIC-type PPIASE domain
32334324125Zn-finger in Ran binding protein and others
272819202923272511209Zinc finger C-x8-C-x5-C-x3-H type (and similar)
131117B-box zinc finger
34352411335Poly(ADP-ribose) polymerase catalytic domain
22321221217Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
27925415163181325324135171,729F-box domain
1111111119Elongation factor 1 gamma, conserved domain
11121116115Calpain family cysteine protease
22222222218Copper fist DNA binding domain
77867776762CRAL/TRIO domain
513450203448484327355BTB/POZ domain
1113984128Ricin-type beta-trefoil lectin domain
1111111119Inhibitor of Apoptosis domain
33333333428Voltage gated chloride channel
111212111944553943246Caspase domain
76995171710686GDSL-like Lipase/Acylhydrolase
1111111119Poly-adenylate binding protein, unique domain
21111111110POLO box duplicated region
172312111333332815185ABC transporter transmembrane region
473353Integrase core domain
33343434330FAD binding domain
1121152215Condensation domain
1111111119S-adenosyl-L-homocysteine hydrolase, NAD binding domain
33112113116HAMP domain
22222221217ribosomal L5P family C-terminus
55555665648Insulinase (Peptidase family M16)
44445444437Dehydrogenase E1 component
1111111119Lumazine binding domain
87666667759Elongation factor G C-terminus
44454665543HMGL-like
44444444436DnaJ central domain
36434225231Starch binding domain
22222221217Ribosomal protein L1p/L10e family
55567684854Cation transporting ATPase, C-terminus
787798961071Cation transporter/ATPase, N-terminus
11112111110dUTPase
45434554438Aconitase C-terminal domain
33333333327Amino acid kinase family
11211111110N-(5'phosphoribosyl)anthranilate (PRA) isomerase
29234556339Acyl transferase domain
1111111119Urease beta subunit
22232332221Dihydrodipicolinate synthetase family
273330282832333016257haloacid dehalogenase-like hydrolase
22222112115Glycosyl hydrolases family 2
127179916141311108Glycosyl hydrolases family 18
1111111119Proliferating cell nuclear antigen, N-terminal domain
11Translation initiation factor IF-3, C-terminal domain
1111111119Adenylosuccinate synthetase
1111111119Asparaginase, N-terminal
32