PFAM Domains • Trametes polyzona CIRM-BRFM 1798 v1.0
Annotations/GenomesArtel1Artele1122_1Pyccin1Pycpun1Pycsa1Traci1Tragib1Tralj1Trapol1Trapub1Trave1TotalAnnotation Description
PFAMs
7,8309,2879,1398,6848,0328,0279,2157,8479,54410,0478,61496,266
4238393641403841374047439ATPase family associated with various cellular activities (AAA)
4040373539413639404745439ABC transporter
4444444444444ATP synthase alpha/beta family, nucleotide-binding domain
1415161515141515161714166Elongation factor Tu GTP binding domain
1111101111111111111111120Helix-loop-helix DNA-binding domain
1111111010101091289111Hsp20/alpha crystallin family
1087777712107789Hsp70 protein
8867788877882KH domain
111115SH2 domain
2417131727261324141025210SH3 domain
1010101010101010101010110Actin
2354425222276126145Ankyrin repeat
7777877976779ADP-ribosylation factor family
3739423847424640515053485Eukaryotic aspartyl protease
3433333233333Cyclic nucleotide-binding domain
111111111110Cytochrome c
67977116983578Double-stranded RNA binding motif
18119191911895EF hand
12111284Fe-4S binding domain
111111118Fibronectin type III domain
1111111111212Globin
1497102016815131725154Glutathione S-transferase, C-terminal domain
1111111111111Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
1099910111010879102Homeodomain
1113Laminin EGF domain
2322222222223lactate/malate dehydrogenase, NAD binding domain
11Lipocalin / cytosolic fatty-acid binding protein family
6555545555454Myosin head (motor domain)
1351381041001291331421241571841851,531Cytochrome P450
1591671721491841771581741951781861,899Protein kinase domain
151010916161015111216140Pyridine nucleotide-disulphide oxidoreductase
2426262624242824292529285Ras family
11119999999109104Response regulator receiver domain
8762361515653842180RNase H
6656565969655969565266673RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
95398Reverse transcriptase (RNA-dependent DNA polymerase)
1111111111111Copper/zinc superoxide dismutase (SODC)
222222223322Iron/manganese superoxide dismutases, alpha-hairpin domain
82023164820922235158Subtilase family
3743393730273630404531395Sugar (and other) transporter
8899889887890Thioredoxin
5555555554554Tubulin/FtsZ family, GTPase domain
3233314von Willebrand factor type A domain
6227201456671861252460434Zinc finger, C2H2 type
68137106761106310957375Zinc finger, C3HC4 type (RING finger)
12586192492092928169Zinc knuckle
2323323232227Protein-tyrosine phosphatase
857965568983797894110113931short chain dehydrogenase
4847413649554353505873553Zinc-binding dehydrogenase
5555445455451Thiolase, N-terminal domain
4543242434338Beta-ketoacyl synthase, N-terminal domain
31112313113202Fe-2S iron-sulfur cluster binding domain
1111111111111Enolase, C-terminal TIM barrel domain
88888888891091Glutamine amidotransferase class-I
1010101110111012101010114TCP-1/cpn60 chaperonin family
3333333333333Glutamine synthetase, catalytic domain
1111111111111Triosephosphate isomerase
1216161710121512171511153E1-E2 ATPase
1615161516151516161614170Core histone H2A/H2B/H3/H4
1111111119Copper binding proteins, plastocyanin/azurin family
6666666666666Alpha amylase, catalytic domain
6565665655661Phorbol esters/diacylglycerol binding domain (C1 domain)
4454555545551Bacterial transferase hexapeptide (six repeats)
3454334344340tRNA synthetases class I (I, L, M and V)
101111121011121111910118Cyclin, N-terminal domain
1613151417211517182320189Carboxylesterase family
4444444444444DNA polymerase family B
3333433633337ATP synthase subunit C
1210101012231518112227170Peroxidase
4345543345747Beta-lactamase
4444464444446C-5 cytosine-specific DNA methylase
2721192124262327202127256Calcineurin-like phosphoesterase
1016141512101812232013163Cellulase (glycosyl hydrolase family 5)
6666665666665tRNA synthetases class II (D, K and N)
3737393738373837363436406Mitochondrial carrier protein
112recA bacterial DNA recombination protein
1818191720182218182220210Aminotransferase class I and II
7334764634754Phosphoribosyl transferase domain
1414131414141314151414153Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111111111111Phosphoglycerate kinase
2222222222222Ribosomal protein S4/S9 N-terminal domain
2222222222222Ribosomal protein S12/S23
2111111111112Chaperonin 10 Kd subunit
1412111214141413131114142C2 domain
2181082121112110820159PH domain
668644105118674bZIP transcription factor
1918171617151616191817188Aldehyde dehydrogenase family
8365646164776676692984738Fungal Zn(2)-Cys(6) binuclear cluster domain
2323222122252225212124249Cytochrome b5-like Heme/Steroid binding domain
3352444444441Oxidoreductase molybdopterin binding domain
12911713121113101115124Oxidoreductase NAD-binding domain
2021232123232121212520239SNF2 family N-terminal domain
2222222222323Ribosomal protein S7p/S5e
2221202020212221211720225Ubiquitin-conjugating enzyme
5555555555555Isocitrate/isopropylmalate dehydrogenase
2222222222222Ribosomal Proteins L2, RNA binding domain
2222222222222Hsp90 protein
2232222222324Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111111111111Dihydrofolate reductase
123Chitin recognition protein
2222222232223Cysteine-rich secretory protein family
1111111111111Ribosomal protein S3, C-terminal domain
6664676566664Cupin
33333333333332-oxoacid dehydrogenases acyltransferase (catalytic domain)
4443334333337Catalase
1111111111111Disintegrin
12111612218145171519150UDP-glucoronosyl and UDP-glucosyl transferase
5585555556559Aminotransferase class-III
2232222222223Ribosomal protein S19
1111111111111DNA gyrase B
4445456544449Thiamine pyrophosphate enzyme, central domain
3333333333333Lyase
1111111111111Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1111111111111Adenylate and Guanylate cyclase catalytic domain
111111111110ATP synthase delta (OSCP) subunit
1111111111111Orotidine 5'-phosphate decarboxylase / HUMPS family
1112221212116Indole-3-glycerol phosphate synthase
1111111111111Aromatic amino acid lyase
1111111111111Pyruvate kinase, barrel domain
101099891091099102Kinesin motor domain
3131303131323431312631339DnaJ domain
1414141514141415141414156Proteasome subunit
6644454444550Major intrinsic protein
1111111111111ATP synthase
2222222223223Glycosyl hydrolase family 1
11111111111113'5'-cyclic nucleotide phosphodiesterase
1111111111111Profilin
1222222222120Ribosomal protein L22p/L17e
222222222220Ribosomal protein L14p/L23e
1917171718171617171917191Ubiquitin family
5555555555454Cofilin/tropomyosin-type actin-binding protein
222222222222214-3-3 protein
3233314Alkaline phosphatase
111111111110Zinc carboxypeptidase
4547483959504450515967559Aldo/keto reductase family
117771112812741298Myb-like DNA-binding domain
5555554555655Forkhead domain
1111111113315Glycosyl hydrolases family 32 N-terminal domain
1122112122116Ribosomal protein L16p/L10e
2222222222222Ribosomal protein S14p/S29e
3334333332333FKBP-type peptidyl-prolyl cis-trans isomerase
1111111111212Glutathione peroxidase
111227
6564566655660Flavodoxin
11Tropomyosin
1111111111111Calreticulin family
3122133333529Common central domain of tyrosinase
777868779101086Aminotransferase class-V
22221852223343Ribonucleotide reductase, small chain
4751824850575249685046600DEAD/DEAH box helicase
77741017390917484858676911Helicase conserved C-terminal domain
1111111111111EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
2224122222223Ribosomal protein L23
1111111111111Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1111111111111Ribosomal protein L5
6643444443446Pyridoxal-dependent decarboxylase conserved domain
3444334345340Citrate synthase, C-terminal domain
5555556555556GHMP kinases N terminal domain
7786777766775Biotin carboxylase, N-terminal domain
1111111111313Tryptophan synthase alpha chain
9998998991211102Pyridoxal-phosphate dependent enzyme
161616151614151515915162NUDIX domain
3434334344338pfkB family carbohydrate kinase
9977788899990Glycosyl hydrolases family 28
2222222222222Ribosomal protein L3
2222222222222Ribosomal protein L11, RNA binding domain
8888898889789Histidine phosphatase superfamily (branch 1)
1111211111112Thymidylate synthase
4444444444444ATP synthase alpha/beta chain, C terminal domain
4444444443443Calponin homology (CH) domain
6332552521539Glutamine amidotransferases class-II
2222222222222Ribosomal protein S15
8855557572865Thaumatin family
1111111112112Fructose-1-6-bisphosphatase, N-terminal domain
1111231112216Ribonucleotide reductase, all-alpha domain
222223222221Ribosomal protein S2
2222222221221SRF-type transcription factor (DNA-binding and dimerisation domain)
1110101089981089102GATA zinc finger
2078719218216824149Amino acid permease
4645444456450Prolyl oligopeptidase family
1222212122118Ribosomal protein L30p/L7e
1513121117131213131415148Histidine phosphatase superfamily (branch 2)
1111111111111Respiratory-chain NADH dehydrogenase, 30 Kd subunit
5544444445548Aconitase family (aconitate hydratase)
5656666666664Glycosyl hydrolase family 10
111111111110Glycosyl hydrolases family 17
2222222222222Ribosomal protein S5, N-terminal domain
1221222222220Nucleoside diphosphate kinase
1435214143129Tetraspanin family
2222222221221Ribosomal protein S10p/S20e
8444474775761Arrestin (or S-antigen), N-terminal domain
111112111111Phosphoglucose isomerase
1111111111111Carbohydrate phosphorylase
1111111114114SecY translocase
3111111111113Respiratory-chain NADH dehydrogenase, 49 Kd subunit
2222222222222Ribosomal protein L6
4433333433336Polyprenyl synthetase
2213222222222Hexokinase
881089797912895Dynamin family
1111111121112Transcription factor TFIID (or TATA-binding protein, TBP)
4333444431437Rieske [2Fe-2S] domain
111111118Phytochrome region
11Proton-conducting membrane transporter
99108899979996Biotin-requiring enzyme
1111111111111Phosphofructokinase
2222222222222Ribosomal protein S17
1111111111111Hydroxymethylglutaryl-coenzyme A reductase
4333443333437FGGY family of carbohydrate kinases, N-terminal domain
8877788977884Enoyl-CoA hydratase/isomerase
3222222222223Ribosomal protein S9/S16
2222222223223Transcription factor TFIIB repeat
6687878777778Cytidine and deoxycytidylate deaminase zinc-binding region
1111111111111Molybdopterin oxidoreductase
8866713899269109Chromo (CHRromatin Organisation MOdifier) domain
1111111111111Phosphatidylinositol-specific phospholipase C, Y domain
1212122122117Phosphatidylinositol-specific phospholipase C, X domain
7766688876776D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
3333833333338Malic enzyme, N-terminal domain
22222212222216-phosphogluconate dehydrogenase, C-terminal domain
101076710710981094Multicopper oxidase
9888898987789WW domain
2222222222222Ribosomal RNA adenine dimethylase
1161141341241671261261331181311291,418WD domain, G-beta repeat
5545455443549Heavy-metal-associated domain
3333333333333Adenylate kinase
2233223222124Phosphoglucomutase/phosphomannomutase, C-terminal domain
1222112122117Ribosomal protein S8
1222222122119Ribosomal protein S11
6666666676566LIM domain
4756544452248Regulator of chromosome condensation (RCC1) repeat
2222222222121Ribosomal protein S13/S18
2222222222222chorismate binding enzyme
332323333333160s Acidic ribosomal protein
11ATP synthase B/B' CF(0)
4444444432441Prenyltransferase and squalene oxidase repeat
6655765655662Protein kinase C terminal domain
1111111111111Single-strand binding protein family
1111111111111S-adenosylmethionine synthetase, N-terminal domain
1010101010101010101010110Bromodomain
89991181098910100Acyl-CoA dehydrogenase, C-terminal domain
1515131614141615151414161Ubiquitin carboxyl-terminal hydrolase
111111111110Ribosomal protein L36
3322232232226Ribonuclease T2 family
5555545555655HSF-type DNA-binding
2222212222221SRP54-type protein, GTPase domain
1111111111111Urease alpha-subunit, N-terminal domain
2625191420202119182524231Serine carboxypeptidase
8888888889990Phosphatidylinositol 3- and 4-kinase
2222232322224Transketolase, thiamine diphosphate binding domain
1113WHEP-TRS domain
4222232322226Inositol monophosphatase family
4445444447448Glutaredoxin
4222442432433Isocitrate lyase family
1111111111111Serine hydroxymethyltransferase
3344333443337Iron-containing alcohol dehydrogenase
2222222222222Ribosomal protein L10
4444454444546KOW motif
1111111111111Ribosomal protein L34
11Negative factor, (F-Protein) or Nef
11114Ribosomal protein L33
3444334344339RF-1 domain
2222222222222Sodium:solute symporter family
1111111111111Imidazoleglycerol-phosphate dehydratase
1111111111111DNA polymerase family A
1111111111111IMP dehydrogenase / GMP reductase domain
1111111111111Glucose-6-phosphate dehydrogenase, NAD binding domain
9978101581218118115Protein phosphatase 2C
2332332333229Nucleotidyl transferase
2223123245531Carbonic anhydrase
111111111110Phosphoribulokinase / Uridine kinase family
1111111010151415141216139Fatty acid desaturase
6766666666667MutS domain V
1111111111111Delta-aminolevulinic acid dehydratase
5553544464449Arginase family
6666679668672MCM P-loop domain
1222112122117Squalene/phytoene synthase
121212912131212121013129FHA domain
3435343837293227313433364AMP-binding enzyme
1415141314141414151614157G-protein alpha subunit
1817151717211521162428209HMG (high mobility group) box
5556665655559His Kinase A (phospho-acceptor) domain
3333433333334Armadillo/beta-catenin-like repeat
2911121628311527161326224Tetratricopeptide repeat
3333324332332Ion transport protein
1111111111111DNA gyrase/topoisomerase IV, subunit A
96771312811661196BRCA1 C Terminus (BRCT) domain
6446664644656Glycosyl transferases group 1
4133443433436Glycosyl transferase family 2
111111118SAM domain (Sterile alpha motif)
3323323333331linker histone H1 and H5 family
1111111111111Ribosomal protein L7/L12 C-terminal domain
1111111119ribonuclease
1111111111111Urease, gamma subunit
3333334333334CoA-ligase
11121110106799118104Phosphopantetheine attachment site
2222222221221Formyl transferase
1111121111101210101110119Metallopeptidase family M24
143431514315351493Leucine Rich Repeat
5216131149441246141763337alpha/beta hydrolase fold
3333333333333RNA polymerase Rpb2, domain 6
5535555556554PB1 domain
2222222222222Staphylococcal nuclease homologue
1012121410101210131210125Rab-GTPase-TBC domain
1111111111111Tudor domain
2222223122222WH1 domain
4433244443641Zinc finger, ZZ type
111111211111HRDC domain
9776896865980CBS domain
2222222221221Ribosomal protein L13
2222222222222Ribosomal protein L4/L1 family
111111111110Clp protease
4444354344342S1 RNA binding domain
1111111111111HIUase/Transthyretin family
5444544454548AhpC/TSA family
4445444444344tRNA synthetases class I (W and Y)
1221112112115UvrD/REP helicase N-terminal domain
4887446495564Rhodanese-like domain
2222222222222Universal stress protein family
3619182233351833201638288Acetyltransferase (GNAT) family
1111111119SecE/Sec61-gamma subunits of protein translocation complex
1111111111111C-terminal regulatory domain of Threonine dehydratase
2222222222222AIR synthase related protein, N-terminal domain
6555666655661tRNA synthetase class II core domain (G, H, P, S and T)
2222222222323Tetrapyrrole (Corrin/Porphyrin) Methylases
1141111112115Glycosyl transferase family, a/b domain
1111122223319Class II Aldolase and Adducin N-terminal domain
3445333334338Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
5554555454653Fes/CIP4, and EFC/F-BAR homology domain
2222432322428IQ calmodulin-binding motif
2222222222222Phosphoinositide 3-kinase family, accessory domain (PIK domain)
3111331311321Phospholipase D Active site motif
1333113133123Regulator of G protein signaling domain
4444444444444GTPase-activator protein for Ras-like GTPase
5666556566561RasGEF domain
6665665655662RasGEF N-terminal motif
1313131313121413131213142RhoGAP domain
1214151412131413141312146RhoGEF domain
44444444