PFAM Domains • Trametopsis cervina CIRM-BRFM 1824 v1.0
Annotations/GenomesBjead1_1Cerun2Panru1Phchr2Phlgi1Trace1TotalAnnotation Description
PFAMs
8,5588,0467,9178,2287,6957,49447,938
504145474239264ATPase family associated with various cellular activities (AAA)
464638494536260ABC transporter
44444424ATP synthase alpha/beta family, nucleotide-binding domain
11114EGF-like domain
15141417141488Elongation factor Tu GTP binding domain
1210911111265Helix-loop-helix DNA-binding domain
781194443Hsp20/alpha crystallin family
812887750Hsp70 protein
88887746KH domain
1111116SH2 domain
262525222225145SH3 domain
10101010111061Actin
222828252422149Ankyrin repeat
78776742ADP-ribosylation factor family
553342593931259Eukaryotic aspartyl protease
33333318Cyclic nucleotide-binding domain
11Cytochrome b(C-terminal)/b6/petD
112Cytochrome b/b6/petB
1111116Cytochrome c
76654634Double-stranded RNA binding motif
221919232118122EF hand
11111164Fe-4S binding domain
1111116Fibronectin type III domain
21126Globin
261617221711109Glutathione S-transferase, C-terminal domain
1121117Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
11Hemopexin
11129913963Homeodomain
112Laminin EGF domain
22222212lactate/malate dehydrogenase, NAD binding domain
54555428Myosin head (motor domain)
18918511915512686860Cytochrome P450
2012092001531601551,078Protein kinase domain
221416252515117Pyridine nucleotide-disulphide oxidoreductase
242525282626154Ras family
11101111111266Response regulator receiver domain
12816911460RNase H
706965716969413RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
22Reverse transcriptase (RNA-dependent DNA polymerase)
211116Copper/zinc superoxide dismutase (SODC)
22232213Iron/manganese superoxide dismutases, alpha-hairpin domain
356411433Subtilase family
303330273024174Sugar (and other) transporter
121012109962Thioredoxin
57555532Tubulin/FtsZ family, GTPase domain
1010497343von Willebrand factor type A domain
634658525954332Zinc finger, C2H2 type
736769616459393Zinc finger, C3HC4 type (RING finger)
251627141112105Zinc knuckle
22222212Protein-tyrosine phosphatase
699498837872494short chain dehydrogenase
453955594234274Zinc-binding dehydrogenase
45565429Thiolase, N-terminal domain
54222217Beta-ketoacyl synthase, N-terminal domain
333333182Fe-2S iron-sulfur cluster binding domain
1112117Enolase, C-terminal TIM barrel domain
112Cytochrome C and Quinol oxidase polypeptide I
88787745Glutamine amidotransferase class-I
910101091058TCP-1/cpn60 chaperonin family
64344627Glutamine synthetase, catalytic domain
1111116Triosephosphate isomerase
12161012101373E1-E2 ATPase
15181716161698Core histone H2A/H2B/H3/H4
21243214Copper binding proteins, plastocyanin/azurin family
99688949Alpha amylase, catalytic domain
46665532Phorbol esters/diacylglycerol binding domain (C1 domain)
45466530Bacterial transferase hexapeptide (six repeats)
33343319tRNA synthetases class I (I, L, M and V)
14121010111168Cyclin, N-terminal domain
16171412161287Carboxylesterase family
44444424DNA polymerase family B
34333319ATP synthase subunit C
21201417101092Peroxidase
72433423Beta-lactamase
54555428C-5 cytosine-specific DNA methylase
262425262625152Calcineurin-like phosphoesterase
12101114121473Cellulase (glycosyl hydrolase family 5)
67766638tRNA synthetases class II (D, K and N)
373938383736225Mitochondrial carrier protein
11recA bacterial DNA recombination protein
15141415151588Aminotransferase class I and II
77767741Phosphoribosyl transferase domain
14141414141383Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111116Phosphoglycerate kinase
21222211Ribosomal protein S4/S9 N-terminal domain
22222212Ribosomal protein S12/S23
1111116Chaperonin 10 Kd subunit
151614151526101C2 domain
202221231917122PH domain
67677538bZIP transcription factor
191719211718111Aldehyde dehydrogenase family
696576866174431Fungal Zn(2)-Cys(6) binuclear cluster domain
262223242424143Cytochrome b5-like Heme/Steroid binding domain
62344423Oxidoreductase molybdopterin binding domain
12101316141277Oxidoreductase NAD-binding domain
272123262425146SNF2 family N-terminal domain
22222212Ribosomal protein S7p/S5e
212121222221128Ubiquitin-conjugating enzyme
55555530Isocitrate/isopropylmalate dehydrogenase
22222212Ribosomal Proteins L2, RNA binding domain
22233214Hsp90 protein
22222212Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
1111116Dihydrofolate reductase
64322320Cysteine-rich secretory protein family
1111116Ribosomal protein S3, C-terminal domain
88896746Cupin
1326Chalcone and stilbene synthases, N-terminal domain
333233172-oxoacid dehydrogenases acyltransferase (catalytic domain)
33552321Catalase
1111116Disintegrin
96552229UDP-glucoronosyl and UDP-glucosyl transferase
57555532Aminotransferase class-III
22222212Ribosomal protein S19
1111116DNA gyrase B
34333319Thiamine pyrophosphate enzyme, central domain
33333318Lyase
22121412Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1111116Adenylate and Guanylate cyclase catalytic domain
1111116ATP synthase delta (OSCP) subunit
111115Orotidine 5'-phosphate decarboxylase / HUMPS family
2111117Indole-3-glycerol phosphate synthase
2121219Aromatic amino acid lyase
1111116Pyruvate kinase, barrel domain
109910101159Kinesin motor domain
313431322732187DnaJ domain
14151614141487Proteasome subunit
104497539Major intrinsic protein
3111118ATP synthase
25222215Glycosyl hydrolase family 1
11111163'5'-cyclic nucleotide phosphodiesterase
1111116Profilin
22221211Ribosomal protein L22p/L17e
22222212Ribosomal protein L14p/L23e
171616191616100Ubiquitin family
55565531Cofilin/tropomyosin-type actin-binding protein
2222221214-3-3 protein
33222214Alkaline phosphatase
1111116Zinc carboxypeptidase
645145565237305Aldo/keto reductase family
12101314121576Myb-like DNA-binding domain
55555631Forkhead domain
11Glycosyl hydrolases family 32 N-terminal domain
1111116Ribosomal protein L16p/L10e
22222212Ribosomal protein S14p/S29e
35333421FKBP-type peptidyl-prolyl cis-trans isomerase
1111116Glutathione peroxidase
22221211
9781411655Flavodoxin
1112117Calreticulin family
6313417Common central domain of tyrosinase
76698642Aminotransferase class-V
13842220Ribonucleotide reductase, small chain
495478494446320DEAD/DEAH box helicase
8687107887877523Helicase conserved C-terminal domain
1111116EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
22222212Ribosomal protein L23
1111116Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1111116Ribosomal protein L5
53355324Pyridoxal-dependent decarboxylase conserved domain
33333318Citrate synthase, C-terminal domain
55564530GHMP kinases N terminal domain
77566637Biotin carboxylase, N-terminal domain
1111116Tryptophan synthase alpha chain
888109851Pyridoxal-phosphate dependent enzyme
16161717161698NUDIX domain
44444525pfkB family carbohydrate kinase
695510641Glycosyl hydrolases family 28
22222212Ribosomal protein L3
22222212Ribosomal protein L11, RNA binding domain
1010899854Histidine phosphatase superfamily (branch 1)
1111116Thymidylate synthase
44444424ATP synthase alpha/beta chain, C terminal domain
54354526Calponin homology (CH) domain
55555530Glutamine amidotransferases class-II
22222212Ribosomal protein S15
53467328Thaumatin family
1111116Fructose-1-6-bisphosphatase, N-terminal domain
11611111Ribonucleotide reductase, all-alpha domain
22222212Ribosomal protein S2
22222212SRF-type transcription factor (DNA-binding and dimerisation domain)
989981053GATA zinc finger
262321202524139Amino acid permease
69666639Prolyl oligopeptidase family
1211117Ribosomal protein L30p/L7e
11131010111469Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
54445426Aconitase family (aconitate hydratase)
45564428Glycosyl hydrolase family 10
1111116Glycosyl hydrolases family 17
22222212Ribosomal protein S5, N-terminal domain
22422214Nucleoside diphosphate kinase
1111127Tetraspanin family
22221211Ribosomal protein S10p/S20e
41686732Arrestin (or S-antigen), N-terminal domain
1111116Phosphoglucose isomerase
1111116Carbohydrate phosphorylase
1111116SecY translocase
1111116Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222212Ribosomal protein L6
33343319Polyprenyl synthetase
22222212Hexokinase
87776742Dynamin family
1111116Transcription factor TFIID (or TATA-binding protein, TBP)
44444424Rieske [2Fe-2S] domain
112Phytochrome region
224Proton-conducting membrane transporter
78798746Biotin-requiring enzyme
1112117Phosphofructokinase
22222212Ribosomal protein S17
1141119Hydroxymethylglutaryl-coenzyme A reductase
33333419FGGY family of carbohydrate kinases, N-terminal domain
88998749Enoyl-CoA hydratase/isomerase
22222212Ribosomal protein S9/S16
24422216Transcription factor TFIIB repeat
65786739Cytidine and deoxycytidylate deaminase zinc-binding region
1111116Molybdopterin oxidoreductase
19814108867Chromo (CHRromatin Organisation MOdifier) domain
1111116Phosphatidylinositol-specific phospholipase C, Y domain
1211117Phosphatidylinositol-specific phospholipase C, X domain
66777740D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
32233316Malic enzyme, N-terminal domain
12122196-phosphogluconate dehydrogenase, C-terminal domain
214955237Multicopper oxidase
1010101191060WW domain
22232213Ribosomal RNA adenine dimethylase
212124124140128157885WD domain, G-beta repeat
45553527Heavy-metal-associated domain
33333318Adenylate kinase
22222212Phosphoglucomutase/phosphomannomutase, C-terminal domain
21122210Ribosomal protein S8
22212211Ribosomal protein S11
66766637LIM domain
213Matrixin
44334422Regulator of chromosome condensation (RCC1) repeat
22222212Ribosomal protein S13/S18
22222212chorismate binding enzyme
3343231860s Acidic ribosomal protein
54454426Prenyltransferase and squalene oxidase repeat
76667739Protein kinase C terminal domain
1111116Single-strand binding protein family
1111116S-adenosylmethionine synthetase, N-terminal domain
1111109101061Bromodomain
88799849Acyl-CoA dehydrogenase, C-terminal domain
14151615151489Ubiquitin carboxyl-terminal hydrolase
11114Ribosomal protein L36
23322315Ribonuclease T2 family
45543425HSF-type DNA-binding
22222212SRP54-type protein, GTPase domain
1111116Urease alpha-subunit, N-terminal domain
331416222218125Serine carboxypeptidase
88888848Phosphatidylinositol 3- and 4-kinase
22322213Transketolase, thiamine diphosphate binding domain
11327Glycosyl hydrolases family 11
42322215Inositol monophosphatase family
34454424Glutaredoxin
113344429Isocitrate lyase family
1111116Serine hydroxymethyltransferase
45643325Iron-containing alcohol dehydrogenase
12212210Ribosomal protein L10
55534527KOW motif
111115Ribosomal protein L34
33333419RF-1 domain
32233215Sodium:solute symporter family
1111116Imidazoleglycerol-phosphate dehydratase
1111116DNA polymerase family A
1111116IMP dehydrogenase / GMP reductase domain
1111116Glucose-6-phosphate dehydrogenase, NAD binding domain
86798846Protein phosphatase 2C
24333318Nucleotidyl transferase
53345323Carbonic anhydrase
1111116Phosphoribulokinase / Uridine kinase family
1516147141177Fatty acid desaturase
66666636MutS domain V
1111116Delta-aminolevulinic acid dehydratase
54575430Arginase family
86666638MCM P-loop domain
1111116Squalene/phytoene synthase
2014111581179FHA domain
423226454233220AMP-binding enzyme
16141513131485G-protein alpha subunit
15141517141893HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
86778844His Kinase A (phospho-acceptor) domain
33333318Armadillo/beta-catenin-like repeat
273130282532173Tetratricopeptide repeat
23333216Ion transport protein
1111116DNA gyrase/topoisomerase IV, subunit A
1011101081160BRCA1 C Terminus (BRCT) domain
66666636Glycosyl transferases group 1
45464427Glycosyl transferase family 2
112SAM domain (Sterile alpha motif)
33323317linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
1113Pectate lyase
61122113ribonuclease
1111116Urease, gamma subunit
33333318CoA-ligase
654107638Phosphopantetheine attachment site
22222212Formyl transferase
1091011101060Metallopeptidase family M24
15151915141593Leucine Rich Repeat
504335584534265alpha/beta hydrolase fold
33333318RNA polymerase Rpb2, domain 6
65565532PB1 domain
22223213Staphylococcal nuclease homologue
1110101110961Rab-GTPase-TBC domain
3111118Tudor domain
22222111WH1 domain
53354323Zinc finger, ZZ type
1111116HRDC domain
99999954CBS domain
22222212Ribosomal protein L13
22222212Ribosomal protein L4/L1 family
111115Clp protease
33535423S1 RNA binding domain
1111116HIUase/Transthyretin family
65766636AhpC/TSA family
44444525tRNA synthetases class I (W and Y)
1111116UvrD/REP helicase N-terminal domain
34564527Rhodanese-like domain
22222212Universal stress protein family
373033433632211Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
1111116C-terminal regulatory domain of Threonine dehydratase
22222212AIR synthase related protein, N-terminal domain
66666636tRNA synthetase class II core domain (G, H, P, S and T)
24222214Tetrapyrrole (Corrin/Porphyrin) Methylases
1111116Glycosyl transferase family, a/b domain
112Class II Aldolase and Adducin N-terminal domain
43332318Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
54445527Fes/CIP4, and EFC/F-BAR homology domain
35454324IQ calmodulin-binding motif
22222212Phosphoinositide 3-kinase family, accessory domain (PIK domain)
43344422Phospholipase D Active site motif
1111116Regulator of G protein signaling domain
44444424GTPase-activator protein for Ras-like GTPase
58756637RasGEF domain
69967744RasGEF N-terminal motif
13121313131276RhoGAP domain
13131314131379RhoGEF domain
54456428SPRY domain
34433320RNA polymerase Rpb1, domain 2
1111116Guanylate kinase
44444424Gelsolin repeat
881098952UBA/TS-N domain
151716171820103PHD-finger
21222211GGL domain
45444425HECT-domain (ubiquitin-transferase)
12232111Helix-hairpin-helix motif
1111116MSP (Major sperm protein) domain
109989853Ribonuclease III domain
22222212Region in Clathrin and VPS
34433320RanBP1 domain
22322213PPIC-type PPIASE domain
112Phosphotyrosine interaction domain (PTB/PID)
23412315Zn-finger in Ran binding protein and others
282327272725157Zinc finger C-x8-C-x5-C-x3-H type (and similar)
1111116B-box zinc finger
99594541Poly(ADP-ribose) polymerase catalytic domain
22222212Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
184131132141108114810F-box domain
1111116Elongation factor 1 gamma, conserved domain
111115Calpain family cysteine protease
23232214Copper fist DNA binding domain
77777742CRAL/TRIO domain
523127272319179BTB/POZ domain
6741624Ricin-type beta-trefoil lectin domain
1111116Inhibitor of Apoptosis domain
33333419Voltage gated chloride channel
211179131879Caspase domain
1517111110872GDSL-like Lipase/Acylhydrolase
1211117Poly-adenylate binding protein, unique domain
1111116POLO box duplicated region
202416242416124ABC transporter transmembrane region
718Integrase core domain
56787437FAD binding domain
3234214Condensation domain
1121117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
1111217HAMP domain
22222212ribosomal L5P family C-terminus
86676639Insulinase (Peptidase family M16)
44444424Dehydrogenase E1 component
1111116Lumazine binding domain
66676637Elongation factor G C-terminus
44444424HMGL-like
44454425DnaJ central domain
24322114Starch binding domain
22222212Ribosomal protein L1p/L10e family
55444628Cation transporting ATPase, C-terminus
68555736Cation transporter/ATPase, N-terminus
111115dUTPase
44445425Aconitase C-terminal domain
33333318Amino acid kinase family
2111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
34222215Acyl transferase domain
1111116Urease beta subunit
34343320Dihydrodipicolinate synthetase family
282829282733173haloacid dehalogenase-like hydrolase
1121229Glycosyl hydrolases family 2
15101010111167Glycosyl hydrolases family 18
1111116Proliferating cell nuclear antigen, N-terminal domain
11Translation initiation factor IF-3, C-terminal domain
1111116Acylphosphatase
1111116Adenylosuccinate synthetase
1111116Asparaginase, N-terminal
33333318Peptidase S24-like
1111116Inorganic pyrophosphatase
54455730Glycosyl hydrolases family 16
23222213Glycosyl hydrolases family 15
81614691164NADH:flavin oxidoreductase / NADH oxidase family
11111163-hydroxyacyl-CoA dehydrogenase, C-terminal domain
44444424Glycosyl hydrolase family 20, catalytic domain
55554529HhH-GPD superfamily base excision DNA repair protein
1111116AIR carboxylase
372424352321164GMC oxidoreductase
22222212Asparagine synthase
322027332629167Fungal cellulose binding domain
56555531Septin
111115EF-1 guanine nucleotide exchange domain
1111116Homoserine dehydrogenase
54356427Flavin-binding monooxygenase-like
33333318tRNA synthetases class I (E and Q), catalytic domain
1111116tRNA synthetases class I (R)
75566534XPG N-terminal domain
13111116101273Metallo-beta-lactamase superfamily
11114F5/8 type C domain
44654427Choline/Carnitine o-acyltransferase
1111116Putative esterase
11Furin-like cysteine rich region
1111116Glycosyl hydrolase family 9
1111116Ferrochelatase
22222212Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1111116Arginosuccinate synthase
112116Electron transfer flavoprotein FAD-binding domain
33333318RNB domain
23254319Dioxygenase
34344321CNH domain
22222212Diacylglycerol kinase catalytic domain
14121111101270Dual specificity phosphatase, catalytic domain
1111116MyTH4 domain
45343423P21-Rho-binding domain
16131516141589PX domain
33333318Ras association (RalGDS/AF-6) domain
44344423UBX domain
55556531VHS domain
1111116Phosphoinositide 3-kinase C2
22222212DAHP synthetase I family
55444426Carbon-nitrogen hydrolase
11N-acetyltransferase
111115Prephenate dehydratase
45555428Syntaxin
11Pentapeptide repeats (8 copies)
55555530Pumilio-family RNA binding repeat
66676738Histone-like transcription factor (CBF/NF-Y) and archaeal histone
1111116Pterin binding enzyme
1111116ER lumen protein retaining receptor
22223213Glycoprotease family
1111116Histidinol dehydrogenase
33333318impB/mucB/samB family
1121117
1111116Ribosomal L15
1111116Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
111115Ribosomal prokaryotic L21 protein
1111116Ribosomal L28 family
1111116Ribosomal L29 protein
1111116Ribosomal L39 protein
1111116Ribosomal S17
1111116Ribulose-phosphate 3 epimerase family
1111116Translationally controlled tumour protein
54485329Glycosyl hydrolase family 7
22322213RNA pseudouridylate synthase
106699646Histone deacetylase domain
2221119POT family
22212211PWWP domain
15172015141394SET domain
57597538Isochorismatase family
22222212Permease family
1111116Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
79578743XPG I-region
1111116Acetokinase family
1111116DNA photolyase
1111116Cation-independent mannose-6-phosphate receptor repeat
111115Cytosol aminopeptidase family, catalytic domain
11114Sulfatase
11111166,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
23333317Acyl CoA binding protein
55565531Cullin family
1111116Elongation factor TS
33353320FAD binding domain
1347119650O-methyltransferase domain
33472322EamA-like transporter family
22232213
67876741ThiF family
1111116Ribosomal family S4e
1111217Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
22222212Ammonium Transporter Family
43344422Sulfate permease family
2112129MATH domain
22222212Dehydratase family
23312213Transaldolase/Fructose-6-phosphate aldolase
33333318Mechanosensitive ion channel
1111116GTP cyclohydrolase II
11111163,4-dihydroxy-2-butanone 4-phosphate synthase
44453424Adaptor complexes medium subunit family
1099119957Exonuclease
1111116Dipeptidyl peptidase IV (DPP IV) N-terminal region
8118109854Glycosyl hydrolase family 3 N terminal domain
1111116Ribosomal protein L44
1211117DNA-dependent RNA polymerase
1111116Glycosyl transferase family 4
1111116HCO3- transporter family
22322314Nucleosome assembly protein (NAP)
44444424Synaptobrevin
1111116GMP synthase C terminal domain
11LAGLIDADG endonuclease
33234318Adenosine/AMP deaminase
74566735Oxidoreductase FAD-binding domain
21123110Thioesterase domain
22222212Histidine biosynthesis protein
33333318Glycosyltransferase family 20
1111116UDP-glucose/GDP-mannose dehydrogenase family, central domain
22232213Carbamoyl-phosphate synthase small chain, CPSase domain
11PAS fold
22222212Probable molybdopterin binding domain
45444425Sec1 family
22222212GDP dissociation inhibitor
87666639Sodium/hydrogen exchanger family
23222213RNA polymerase Rpb3/RpoA insert domain
44444424Initiation factor 2 subunit family
12216PQQ enzyme repeat
22312212Electron transfer flavoprotein domain
1111116Uricase
1111116Ribosomal S3Ae family
1111116Ribosomal L27 protein
1111116GTP1/OBG
22222212Gamma-glutamyltranspeptidase
11S-100/ICaBP type calcium binding domain
1111116GrpE
43333218TatD related DNase
1212129Inhibitor of apoptosis-promoting Bax1
1111116Eukaryotic DNA topoisomerase I, catalytic core
65556532Dynamin central region
11111166-O-methylguanine DNA methyltransferase, DNA binding domain
63267529Bacteriorhodopsin-like protein
22222212Carboxyl transferase domain
681086442UbiA prenyltransferase family
11DegT/DnrJ/EryC1/StrS aminotransferase family
44454425Endoribonuclease L-PSP
1113Phosphorylase superfamily
1111116Mannose-6-phosphate isomerase
66576737Cys/Met metabolism PLP-dependent enzyme
46666432Glycosyl hydrolases family 31
1111116NADH ubiquinone oxidoreductase, 20 Kd subunit
756106640ABC-2 type transporter
42222214Amino-transferase class IV
44444424CDP-alcohol phosphatidyltransferase
1113Calpain large subunit, domain III