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PFAM Domains • Kretzschmaria deusta IL1129 v1.0
Annotations/GenomesAntav1Bisnum1DalEC12_1Entma1HypEC38_3Kredeu1Xylhyp1TotalAnnotation Description
PFAMs
10,48610,3948,53210,2119,14911,71211,45971,943
1127 transmembrane receptor (rhodopsin family)
112267 transmembrane receptor (Secretin family)
88545350586362428ATPase family associated with various cellular activities (AAA)
49384338474045300ABC transporter
444444428ATP synthase alpha/beta family, nucleotide-binding domain
14151415141615103Elongation factor Tu GTP binding domain
13810111091172Helix-loop-helix DNA-binding domain
222122112Hsp20/alpha crystallin family
8107117141572Hsp70 protein
878798754KH domain
1113SH2 domain
27122612251111124SH3 domain
9101099101067Actin
172256616894032440Ankyrin repeat
213121111PAN domain
788788753ADP-ribosylation factor family
22221722162021140Eukaryotic aspartyl protease
444444428Cyclic nucleotide-binding domain
112Cytochrome b(C-terminal)/b6/petD
11Cytochrome b/b6/petB
11111117Cytochrome c
11Double-stranded RNA binding motif
172193182263EF hand
11134Fe-4S binding domain
212121110Fibronectin type III domain
222232215Globin
2081515191511103Glutathione S-transferase, C-terminal domain
211112210Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
858585544Homeodomain
322222215lactate/malate dehydrogenase, NAD binding domain
444455430Myosin head (motor domain)
2381221181291601761941,137Cytochrome P450
1811151131331251771741,018Protein kinase domain
19131714141718112Pyridine nucleotide-disulphide oxidoreductase
28282527263030194Ras family
1311131012111484Response regulator receiver domain
1252648744RNase H
60515957605249388RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
232323318Copper/zinc superoxide dismutase (SODC)
222222214Iron/manganese superoxide dismutases, alpha-hairpin domain
17252018212521147Subtilase family
59785953696259439Sugar (and other) transporter
1312111213131286Thioredoxin
421512Trypsin
564454533Tubulin/FtsZ family, GTPase domain
514414von Willebrand factor type A domain
91236325703329334Zinc finger, C2H2 type
54743745105171Zinc finger, C3HC4 type (RING finger)
10311162336Zinc knuckle
222222214Protein-tyrosine phosphatase
2001151471171701431611,053short chain dehydrogenase
99536352716775480Zinc-binding dehydrogenase
665656640Thiolase, N-terminal domain
69342833375957317Beta-ketoacyl synthase, N-terminal domain
7485754402Fe-2S iron-sulfur cluster binding domain
11Papain family cysteine protease
11111117Enolase, C-terminal TIM barrel domain
112Cytochrome C and Quinol oxidase polypeptide I
119811891066Glutamine amidotransferase class-I
1010101010101070TCP-1/cpn60 chaperonin family
11ATP synthase A chain
444354327Glutamine synthetase, catalytic domain
222222214Triosephosphate isomerase
15211819181920130E1-E2 ATPase
1288888860Core histone H2A/H2B/H3/H4
11Copper binding proteins, plastocyanin/azurin family
674444534Alpha amylase, catalytic domain
222222214Phorbol esters/diacylglycerol binding domain (C1 domain)
777875849Bacterial transferase hexapeptide (six repeats)
453636532tRNA synthetases class I (I, L, M and V)
1076868853Cyclin, N-terminal domain
27181914181322131Carboxylesterase family
444544429DNA polymerase family B
645455534ATP synthase subunit C
555667640Peroxidase
187101513121893Beta-lactamase
443333424C-5 cytosine-specific DNA methylase
11NADH dehydrogenase
28232624252727180Calcineurin-like phosphoesterase
10151217121917102Cellulase (glycosyl hydrolase family 5)
878787752tRNA synthetases class II (D, K and N)
38373837393839266Mitochondrial carrier protein
1113recA bacterial DNA recombination protein
19181621151621126Aminotransferase class I and II
868575443Phosphoribosyl transferase domain
1010101010101070Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1124Ribosome inactivating protein
11111117Phosphoglycerate kinase
222221213Ribosomal protein S4/S9 N-terminal domain
222222214Ribosomal protein S12/S23
1111116Bacterial regulatory helix-turn-helix proteins, AraC family
11111117Chaperonin 10 Kd subunit
131112101291077C2 domain
188198188988PH domain
1117101510171797bZIP transcription factor
20201822182123142Aldehyde dehydrogenase family
2321561701501961891901,283Fungal Zn(2)-Cys(6) binuclear cluster domain
25242323242425168Cytochrome b5-like Heme/Steroid binding domain
424333322Oxidoreductase molybdopterin binding domain
17121814181517111Oxidoreductase NAD-binding domain
33272626313531209SNF2 family N-terminal domain
222212213Ribosomal protein S7p/S5e
23212122212122151Ubiquitin-conjugating enzyme
786768749Isocitrate/isopropylmalate dehydrogenase
222222214Ribosomal Proteins L2, RNA binding domain
11111117Hsp90 protein
222222214Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
11111117Dihydrofolate reductase
546152326Chitin recognition protein
223233318Cysteine-rich secretory protein family
11111117Ribosomal protein S3, C-terminal domain
444343325Cupin
223131113Annexin
11111117Eukaryotic-type carbonic anhydrase
211212211Chalcone and stilbene synthases, N-terminal domain
3333333212-oxoacid dehydrogenases acyltransferase (catalytic domain)
547383535Catalase
11111117Disintegrin
14213314UDP-glucoronosyl and UDP-glucosyl transferase
9117689757Aminotransferase class-III
232232216Ribosomal protein S19
11111117DNA gyrase B
744456434Thiamine pyrophosphate enzyme, central domain
453333324Lyase
222322215Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
112Sodium:neurotransmitter symporter family
11111117Adenylate and Guanylate cyclase catalytic domain
11111117ATP synthase delta (OSCP) subunit
11111117Orotidine 5'-phosphate decarboxylase / HUMPS family
11111117Indole-3-glycerol phosphate synthase
212218Aromatic amino acid lyase
11111117Pyruvate kinase, barrel domain
1212121112111383Kinesin motor domain
31362628303130212DnaJ domain
1413141414141497Proteasome subunit
23422114Major intrinsic protein
11111117ATP synthase
111122210Glycosyl hydrolase family 1
111111173'5'-cyclic nucleotide phosphodiesterase
11111117Profilin
121212211Ribosomal protein L22p/L17e
232222215Ribosomal protein L14p/L23e
11109101011970Ubiquitin family
555555535Cofilin/tropomyosin-type actin-binding protein
23232331814-3-3 protein
525252223Alkaline phosphatase
655656639Zinc carboxypeptidase
39323427363233233Aldo/keto reductase family
157127177671Myb-like DNA-binding domain
844443330Forkhead domain
2211118Glycosyl hydrolases family 32 N-terminal domain
121212211Ribosomal protein L16p/L10e
322222215Ribosomal protein S14p/S29e
433333322FKBP-type peptidyl-prolyl cis-trans isomerase
11111117Glutathione peroxidase
3227
857676746Flavodoxin
11111117Calreticulin family
1491298141480Common central domain of tyrosinase
119111210111175Aminotransferase class-V
11111117Ribonucleotide reductase, small chain
41454544424847312DEAD/DEAH box helicase
93757870808180557Helicase conserved C-terminal domain
11111117EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
222222214Ribosomal protein L23
11111117Pyridoxal-dependent decarboxylase, C-terminal sheet domain
11211118Ribosomal protein L5
776767848Pyridoxal-dependent decarboxylase conserved domain
853436635Citrate synthase, C-terminal domain
555555535GHMP kinases N terminal domain
867666645Biotin carboxylase, N-terminal domain
11111117Tryptophan synthase alpha chain
1011111112121178Pyridoxal-phosphate dependent enzyme
24181917202116135NUDIX domain
766868849pfkB family carbohydrate kinase
763739742Glycosyl hydrolases family 28
32229Luciferase-like monooxygenase
222222214Ribosomal protein L3
222122213Ribosomal protein L11, RNA binding domain
18191617181616120Histidine phosphatase superfamily (branch 1)
11111117Thymidylate synthase
4414316Lipoxygenase
444444428ATP synthase alpha/beta chain, C terminal domain
554555534Calponin homology (CH) domain
524363225Glutamine amidotransferases class-II
221222213Ribosomal protein S15
21111118Thaumatin family
222222214Fructose-1-6-bisphosphatase, N-terminal domain
11111117Ribonucleotide reductase, all-alpha domain
221222213Ribosomal protein S2
312222214SRF-type transcription factor (DNA-binding and dimerisation domain)
666766643GATA zinc finger
34163312371615163Amino acid permease
665658743Prolyl oligopeptidase family
222122213Ribosomal protein L30p/L7e
6710695548Histidine phosphatase superfamily (branch 2)
11111117Respiratory-chain NADH dehydrogenase, 30 Kd subunit
645446534Aconitase family (aconitate hydratase)
323232217Glycosyl hydrolase family 10
424142219Glycosyl hydrolases family 17
222222214Ribosomal protein S5, N-terminal domain
11111117Nucleoside diphosphate kinase
11226Tetraspanin family
121212211Ribosomal protein S10p/S20e
333423321Arrestin (or S-antigen), N-terminal domain
11111117Phosphoglucose isomerase
11111117Carbohydrate phosphorylase
111114110SecY translocase
11111117Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222214Ribosomal protein L6
1033535433Polyprenyl synthetase
445354530Hexokinase
11158129231795Dynamin family
31111119Transcription factor TFIID (or TATA-binding protein, TBP)
776766544Rieske [2Fe-2S] domain
1111116Phytochrome region
314Proton-conducting membrane transporter
989887756Biotin-requiring enzyme
11111117Phosphofructokinase
122221111Ribosomal protein S17
11111117Hydroxymethylglutaryl-coenzyme A reductase
333333220FGGY family of carbohydrate kinases, N-terminal domain
16881110131278Enoyl-CoA hydratase/isomerase
222222214Ribosomal protein S9/S16
222222214Transcription factor TFIIB repeat
898798958Cytidine and deoxycytidylate deaminase zinc-binding region
11111117Molybdopterin oxidoreductase
12695712657Chromo (CHRromatin Organisation MOdifier) domain
444444428Phosphatidylinositol-specific phospholipase C, Y domain
555656638Phosphatidylinositol-specific phospholipase C, X domain
81296712963D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
222222214Malic enzyme, N-terminal domain
2221211116-phosphogluconate dehydrogenase, C-terminal domain
14148129131383Multicopper oxidase
1111109109969WW domain
121122211Ribosomal RNA adenine dimethylase
1113Yeast PIR protein repeat
122106103106108112108765WD domain, G-beta repeat
454464431Heavy-metal-associated domain
573638638Adenylate kinase
222222214Phosphoglucomutase/phosphomannomutase, C-terminal domain
121223314Ribosomal protein S8
222222214Ribosomal protein S11
444444428LIM domain
1113Matrixin
242642525Regulator of chromosome condensation (RCC1) repeat
222222214Ribosomal protein S13/S18
322423319chorismate binding enzyme
33333332160s Acidic ribosomal protein
444444529Prenyltransferase and squalene oxidase repeat
646564536Protein kinase C terminal domain
11111117Single-strand binding protein family
11111117S-adenosylmethionine synthetase, N-terminal domain
988987857Bromodomain
1296119131373Acyl-CoA dehydrogenase, C-terminal domain
1413141314131394Ubiquitin carboxyl-terminal hydrolase
11111117Ribosomal protein L36
422425524Ribonuclease T2 family
333333220HSF-type DNA-binding
222323317SRP54-type protein, GTPase domain
11111117Urease alpha-subunit, N-terminal domain
1079886755Serine carboxypeptidase
888888856Phosphatidylinositol 3- and 4-kinase
121213212Transketolase, thiamine diphosphate binding domain
1023323528Glycosyl hydrolases family 11
433434425Inositol monophosphatase family
444444428Glutaredoxin
525242222Isocitrate lyase family
222222214Serine hydroxymethyltransferase
224144320Iron-containing alcohol dehydrogenase
222222214Ribosomal protein L10
424445326KOW motif
111115Ribosomal protein L34
11114Ribosomal protein L33
333333321RF-1 domain
223242217Sodium:solute symporter family
11111117Imidazoleglycerol-phosphate dehydratase
11111117DNA polymerase family A
11111117IMP dehydrogenase / GMP reductase domain
11111117Glucose-6-phosphate dehydrogenase, NAD binding domain
766667745Protein phosphatase 2C
222222214Nucleotidyl transferase
633333425Carbonic anhydrase
111212210Phosphoribulokinase / Uridine kinase family
785556743Fatty acid desaturase
666666642MutS domain V
11121118Delta-aminolevulinic acid dehydratase
544344428Arginase family
666666642MCM P-loop domain
232323318Squalene/phytoene synthase
91010101012970FHA domain
11NADH-ubiquinone/plastoquinone oxidoreductase chain 6
79474351476059386AMP-binding enzyme
533445428G-protein alpha subunit
198810812974HMG (high mobility group) box
11NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
107108981062His Kinase A (phospho-acceptor) domain
333333321Armadillo/beta-catenin-like repeat
32112613261412134Tetratricopeptide repeat
334243322Ion transport protein
11111117DNA gyrase/topoisomerase IV, subunit A
10796116655BRCA1 C Terminus (BRCT) domain
656363433Glycosyl transferases group 1
423242219Glycosyl transferase family 2
131112211SAM domain (Sterile alpha motif)
11111117linker histone H1 and H5 family
11111117Ribosomal protein L7/L12 C-terminal domain
751715430Pectate lyase
433234322ribonuclease
11111117Urease, gamma subunit
444444428CoA-ligase
60372042317166327Phosphopantetheine attachment site
333424322Formyl transferase
9109119131273Metallopeptidase family M24
133153163255Leucine Rich Repeat
57103811511015192alpha/beta hydrolase fold
333333321RNA polymerase Rpb2, domain 6
444434427PB1 domain
222222214Staphylococcal nuclease homologue
9129129121275Rab-GTPase-TBC domain
11111117Tudor domain
11111117WH1 domain
443533325Zinc finger, ZZ type
222122213HRDC domain
968696650CBS domain
222222214Ribosomal protein L13
222222214Ribosomal protein L4/L1 family
11111117Clp protease
445454430S1 RNA binding domain
11111117HIUase/Transthyretin family
535364329AhpC/TSA family
444444428tRNA synthetases class I (W and Y)
121116UvrD/REP helicase N-terminal domain
587958850Rhodanese-like domain
222222214Universal stress protein family
56284128403733263Acetyltransferase (GNAT) family
11111117SecE/Sec61-gamma subunits of protein translocation complex
11111117C-terminal regulatory domain of Threonine dehydratase
222222214AIR synthase related protein, N-terminal domain
878888956tRNA synthetase class II core domain (G, H, P, S and T)
11111117SpoU rRNA Methylase family
222222214Tetrapyrrole (Corrin/Porphyrin) Methylases
11111117Glycosyl transferase family, a/b domain
1113PDZ domain
543438633Class II Aldolase and Adducin N-terminal domain
444444428Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
555555535Fes/CIP4, and EFC/F-BAR homology domain
524252222IQ calmodulin-binding motif
222222214Phosphoinositide 3-kinase family, accessory domain (PIK domain)
535362226Phospholipase D Active site motif
151414420Regulator of G protein signaling domain
444444428GTPase-activator protein for Ras-like GTPase
443444427RasGEF domain
443444427RasGEF N-terminal motif
10999910965RhoGAP domain
666666642RhoGEF domain
333335323SPRY domain
333333321RNA polymerase Rpb1, domain 2
322322317Guanylate kinase
544344428Gelsolin repeat
646464535UBA/TS-N domain
1781715171314101PHD-finger
11111117GGL domain
666666642HECT-domain (ubiquitin-transferase)
212121110Helix-hairpin-helix motif
11111117MSP (Major sperm protein) domain
534353427Ribonuclease III domain
242324421Region in Clathrin and VPS
322333319RanBP1 domain
222222214PPIC-type PPIASE domain
334232219Zn-finger in Ran binding protein and others
1810178188887Zinc finger C-x8-C-x5-C-x3-H type (and similar)
423232319Poly(ADP-ribose) polymerase catalytic domain
11111117Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
5912669661417243F-box domain
11111117Elongation factor 1 gamma, conserved domain
434444528Calpain family cysteine protease
112222212Copper fist DNA binding domain
865858747CRAL/TRIO domain
1093125161065BTB/POZ domain
222132214Ricin-type beta-trefoil lectin domain
11111128Inhibitor of Apoptosis domain
333333321Voltage gated chloride channel
835264432Caspase domain
18715715141288GDSL-like Lipase/Acylhydrolase
11111117Poly-adenylate binding protein, unique domain
29192220232423160ABC transporter transmembrane region
677577948FAD binding domain
3410913111914110Condensation domain
11111117S-adenosyl-L-homocysteine hydrolase, NAD binding domain
11111117HAMP domain
222222214ribosomal L5P family C-terminus
555656638Insulinase (Peptidase family M16)
333333321Dehydrogenase E1 component
11111117Lumazine binding domain
566666641Elongation factor G C-terminus
546547435HMGL-like
444444428DnaJ central domain
322333420Starch binding domain
233323319Ribosomal protein L1p/L10e family
798777853Cation transporting ATPase, C-terminus
910119109967Cation transporter/ATPase, N-terminus
111213110dUTPase
645448637Aconitase C-terminal domain
444444428Amino acid kinase family
11111117N-(5'phosphoribosyl)anthranilate (PRA) isomerase
66322833395760315Acyl transferase domain
11111117Urease beta subunit
685655641Dihydrodipicolinate synthetase family
35173515381415169haloacid dehalogenase-like hydrolase
866978953Glycosyl hydrolases family 2
24131616172320129Glycosyl hydrolases family 18
11111117Proliferating cell nuclear antigen, N-terminal domain
112116Translation initiation factor IF-3, C-terminal domain
11111117Acylphosphatase
312121212Adenylosuccinate synthetase
12112119Asparaginase, N-terminal
313233318Peptidase S24-like
11111117Inorganic pyrophosphatase
14191315131716107Glycosyl hydrolases family 16
322322317Glycosyl hydrolases family 15
1079687855NADH:flavin oxidoreductase / NADH oxidase family
111112183-hydroxyacyl-CoA dehydrogenase, C-terminal domain
333323320Glycosyl hydrolase family 20, catalytic domain
564667741HhH-GPD superfamily base excision DNA repair protein
11111117AIR carboxylase
34302828343635225GMC oxidoreductase
332222216Asparagine synthase
2266127191789Fungal cellulose binding domain
565656639Septin
11111117EF-1 guanine nucleotide exchange domain
11111117Homoserine dehydrogenase
383242123Flavin-binding monooxygenase-like
11LPXTG cell wall anchor motif
533333424tRNA synthetases class I (E and Q), catalytic domain
311121110tRNA synthetases class I (R)
444345428XPG N-terminal domain
12676106653Metallo-beta-lactamase superfamily
1111116F5/8 type C domain
432323421Choline/Carnitine o-acyltransferase
212222112Putative esterase
11111117Ferrochelatase
222222214Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
111214414Arginosuccinate synthase
11111117Electron transfer flavoprotein FAD-binding domain
333333321RNB domain
81177713861Dioxygenase
333333321CNH domain
222222214Diacylglycerol kinase catalytic domain
877777750Dual specificity phosphatase, catalytic domain
322234218P21-Rho-binding domain
1312131311131388PX domain
323232217Ras association (RalGDS/AF-6) domain
545454431UBX domain
444445429VHS domain
11111117Phosphoinositide 3-kinase C2
222222315DAHP synthetase I family
912119119970Carbon-nitrogen hydrolase
2111128N-acetyltransferase
11111117Prephenate dehydratase
444444428Syntaxin
545454431Pumilio-family RNA binding repeat
676776746Histone-like transcription factor (CBF/NF-Y) and archaeal histone
11111117Pterin binding enzyme
222222214ER lumen protein retaining receptor
322222215tRNA N6-adenosine threonylcarbamoyltransferase
11212119Histidinol dehydrogenase
444444428impB/mucB/samB family
1113
11111117Ribosomal L15
131414418Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
11111117Ribosomal L28 family
11111117Ribosomal L29 protein
11111117Ribosomal L39 protein
11111117Ribosomal S17
11111117Ribulose-phosphate 3 epimerase family
11111117Translationally controlled tumour protein
745555536Glycosyl hydrolase family 7
21115Ring hydroxylating alpha subunit (catalytic domain)
11111117RNA pseudouridylate synthase
444444428Histone deacetylase domain
646645536POT family
11111117PWWP domain
22211920202123146SET domain
1178712101065Isochorismatase family
333333321Permease family
11111117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
545555534XPG I-region
11114Acetokinase family
333333220DNA photolyase
22134618Nitroreductase family
8866117551Sulfatase
111111176,7-dimethyl-8-ribityllumazine synthase