PFAM Domains • Fimicolochytrium jonesii JEL569 v1.0
Annotations/GenomesFimjon1Gaesem1Gervar1Powhir1Spipu1Triarc1TotalAnnotation Description
PFAMs
9,3868,3999,0489,2978,3749,19353,697
613781522717 transmembrane receptor (rhodopsin family)
2515221116221117 transmembrane sweet-taste receptor of 3 GCPR
494545434845275ATPase family associated with various cellular activities (AAA)
564664625548331ABC transporter
64454427ATP synthase alpha/beta family, nucleotide-binding domain
181717181717104Elongation factor Tu GTP binding domain
981112121163Helix-loop-helix DNA-binding domain
34328424Hsp20/alpha crystallin family
11811118958Hsp70 protein
101210912861KH domain
1113Kunitz/Bovine pancreatic trypsin inhibitor domain
221825206926180SH3 domain
11111111111469Actin
12141513536113Ankyrin repeat
311117PAN domain
1210101015966ADP-ribosylation factor family
1061669956Eukaryotic aspartyl protease
15101413231691Cyclic nucleotide-binding domain
11Cystatin domain
55Cytochrome b(C-terminal)/b6/petD
1311118Cytochrome c
34227220Double-stranded RNA binding motif
53247158EF hand
224Fe-4S binding domain
2215Fibronectin type II domain
1215110Fibronectin type III domain
11114Globin
54766331Glutathione S-transferase, C-terminal domain
23222213Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
11111110181172Homeodomain
11Laminin EGF domain
24434320lactate/malate dehydrogenase, NAD binding domain
11Lectin C-type domain
78789847Myosin head (motor domain)
9109612450Cytochrome P450
156138153146151150894Protein kinase domain
13111112121069Pyridine nucleotide-disulphide oxidoreductase
333031313233190Ras family
412835414239226Response regulator receiver domain
4232213RNase H
786670748970447RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
43335321Copper/zinc superoxide dismutase (SODC)
1111217Iron/manganese superoxide dismutases, alpha-hairpin domain
14111210132888Subtilase family
757881045Sugar (and other) transporter
15121415151384Thioredoxin
3328Trefoil (P-type) domain
32510Trypsin
97877644Tubulin/FtsZ family, GTPase domain
11114von Willebrand factor type A domain
1211117von Willebrand factor type D domain
211817268634202Zinc finger, C2H2 type
5587697101Zinc finger, C3HC4 type (RING finger)
12884121357Zinc knuckle
35243623Protein-tyrosine phosphatase
382635373629201short chain dehydrogenase
201316212115106Zinc-binding dehydrogenase
75445429Thiolase, N-terminal domain
43523320Beta-ketoacyl synthase, N-terminal domain
233232152Fe-2S iron-sulfur cluster binding domain
112Papain family cysteine protease
1111116Enolase, C-terminal TIM barrel domain
33Cytochrome C and Quinol oxidase polypeptide I
22Cytochrome C oxidase subunit II, periplasmic domain
97888848Glutamine amidotransferase class-I
11101210101063TCP-1/cpn60 chaperonin family
33ATP synthase A chain
22223213Glutamine synthetase, catalytic domain
1121117Triosephosphate isomerase
232322282228146E1-E2 ATPase
22131518141395Core histone H2A/H2B/H3/H4
1111116Copper binding proteins, plastocyanin/azurin family
710768644Alpha amylase, catalytic domain
967612848Phorbol esters/diacylglycerol binding domain (C1 domain)
78789645Bacterial transferase hexapeptide (six repeats)
44543525tRNA synthetases class I (I, L, M and V)
11119119960Cyclin, N-terminal domain
62333219Carboxylesterase family
44446426DNA polymerase family B
43433623ATP synthase subunit C
11Legume lectin domain
42552119Peroxidase
62462222Beta-lactamase
119895648C-5 cytosine-specific DNA methylase
22NADH dehydrogenase
161419161917101Calcineurin-like phosphoesterase
66755534Cellulase (glycosyl hydrolase family 5)
45656632tRNA synthetases class II (D, K and N)
444042455141263Mitochondrial carrier protein
14161514161489Aminotransferase class I and II
75579538Phosphoribosyl transferase domain
16151716181698Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111116Phosphoglycerate kinase
23222213Ribosomal protein S4/S9 N-terminal domain
34333218Ribosomal protein S12/S23
2111117Chaperonin 10 Kd subunit
221520202722126C2 domain
181314144617122PH domain
15141213141583bZIP transcription factor
8101199956Aldehyde dehydrogenase family
161317162517104Fungal Zn(2)-Cys(6) binuclear cluster domain
272429313526172Cytochrome b5-like Heme/Steroid binding domain
12224112Oxidoreductase molybdopterin binding domain
109111617871Oxidoreductase NAD-binding domain
262524252926155SNF2 family N-terminal domain
22222212Ribosomal protein S7p/S5e
272226252622148Ubiquitin-conjugating enzyme
55655733Isocitrate/isopropylmalate dehydrogenase
22222212Ribosomal Proteins L2, RNA binding domain
22422214Hsp90 protein
22222212Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
2112118Dihydrofolate reductase
23425622Chitin recognition protein
11322110Cysteine-rich secretory protein family
23221212Ribosomal protein S3, C-terminal domain
112Cupin
13123212Annexin
1111116Eukaryotic-type carbonic anhydrase
11Chalcone and stilbene synthases, N-terminal domain
544543252-oxoacid dehydrogenases acyltransferase (catalytic domain)
32222213Catalase
1111116Disintegrin
1146UDP-glucoronosyl and UDP-glucosyl transferase
65435427Aminotransferase class-III
32222213Ribosomal protein S19
22222212DNA gyrase B
22222111Thiamine pyrophosphate enzyme, central domain
43334421Lyase
111115Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1113Sodium:neurotransmitter symporter family
1111318Ferritin-like domain
1371213121370Adenylate and Guanylate cyclase catalytic domain
1111116ATP synthase delta (OSCP) subunit
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
1111116Indole-3-glycerol phosphate synthase
33343319Pyruvate kinase, barrel domain
231819252720132Kinesin motor domain
343132313734199DnaJ domain
14141414141484Proteasome subunit
42453321Major intrinsic protein
1121117ATP synthase
11Glycosyl hydrolase family 1
857888443'5'-cyclic nucleotide phosphodiesterase
22222212Profilin
23332316Ribosomal protein L22p/L17e
23222314Ribosomal protein L14p/L23e
11Resolvase, N terminal domain
171320192317109Ubiquitin family
55446529Cofilin/tropomyosin-type actin-binding protein
211111714-3-3 protein
21125213Alkaline phosphatase
53554527Zinc carboxypeptidase
111011912962Aldo/keto reductase family
951210211067Myb-like DNA-binding domain
22123313Forkhead domain
112Glycosyl hydrolases family 32 N-terminal domain
33231214Ribosomal protein L16p/L10e
33222214Ribosomal protein S14p/S29e
58667840FKBP-type peptidyl-prolyl cis-trans isomerase
22122110Glutathione peroxidase
11
465610536Flavodoxin
112Tropomyosin
21212210Calreticulin family
51543826Common central domain of tyrosinase
65655532Aminotransferase class-V
23132213Ribonucleotide reductase, small chain
574755564966330DEAD/DEAH box helicase
8681898791100534Helicase conserved C-terminal domain
11Fructose-bisphosphate aldolase class-I
1111116EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
33232215Ribosomal protein L23
1111116Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1111116Ribosomal protein L5
53555427Pyridoxal-dependent decarboxylase conserved domain
45454426Citrate synthase, C-terminal domain
55556531GHMP kinases N terminal domain
57557635Biotin carboxylase, N-terminal domain
1111116Tryptophan synthase alpha chain
87799949Pyridoxal-phosphate dependent enzyme
14101415151482NUDIX domain
33336422pfkB family carbohydrate kinase
2327Glycosyl hydrolases family 28
11Luciferase-like monooxygenase
22222212Ribosomal protein L3
23222213Ribosomal protein L11, RNA binding domain
968810647Histidine phosphatase superfamily (branch 1)
1111217Thymidylate synthase
11Lipoxygenase
64444426ATP synthase alpha/beta chain, C terminal domain
99121112861Calponin homology (CH) domain
44457428Glutamine amidotransferases class-II
1111116Phosphoenolpyruvate carboxylase
22222212Ribosomal protein S15
111115'Cold-shock' DNA-binding domain
11222412Thaumatin family
2111117Fructose-1-6-bisphosphatase, N-terminal domain
1111116Ribonucleotide reductase, all-alpha domain
22222212Ribosomal protein S2
22223415SRF-type transcription factor (DNA-binding and dimerisation domain)
13111116231791GATA zinc finger
41649327Amino acid permease
810810111562Prolyl oligopeptidase family
1212129Ribosomal protein L30p/L7e
575610437Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
44444424Aconitase family (aconitate hydratase)
22Glycosyl hydrolase family 10
112Glycosyl hydrolases family 17
22223213Ribosomal protein S5, N-terminal domain
85555735Nucleoside diphosphate kinase
43464223Tetraspanin family
22221211Ribosomal protein S10p/S20e
85864940Arrestin (or S-antigen), N-terminal domain
1111116Phosphoglucose isomerase
11114Carbohydrate phosphorylase
2111128SecY translocase
1111116Respiratory-chain NADH dehydrogenase, 49 Kd subunit
23222213Ribosomal protein L6
43333319Polyprenyl synthetase
32222213Hexokinase
66785638Dynamin family
111115Biopterin-dependent aromatic amino acid hydroxylase
1111116Transcription factor TFIID (or TATA-binding protein, TBP)
55449330Rieske [2Fe-2S] domain
314Phytochrome region
55Proton-conducting membrane transporter
78678642Biotin-requiring enzyme
1111116Phosphofructokinase
33332216Ribosomal protein S17
111115Hydroxymethylglutaryl-coenzyme A reductase
22333417FGGY family of carbohydrate kinases, N-terminal domain
23331315FERM central domain
1111116Sodium:dicarboxylate symporter family
11MerR family regulatory protein
896811648Enoyl-CoA hydratase/isomerase
22122110Ribosomal protein S9/S16
22222212Transcription factor TFIIB repeat
75666636Cytidine and deoxycytidylate deaminase zinc-binding region
1111116Molybdopterin oxidoreductase
968913853Chromo (CHRromatin Organisation MOdifier) domain
1111116Phosphatidylinositol-specific phospholipase C, Y domain
1122118Phosphatidylinositol-specific phospholipase C, X domain
22112412D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
1111329Malic enzyme, N-terminal domain
11112176-phosphogluconate dehydrogenase, C-terminal domain
3164216Multicopper oxidase
12871214962WW domain
1111116Ribosomal RNA adenine dimethylase
1751591701782021711,055WD domain, G-beta repeat
1113Calponin family repeat
54445426Heavy-metal-associated domain
87876844Adenylate kinase
22222212Phosphoglucomutase/phosphomannomutase, C-terminal domain
22222212Ribosomal protein S8
22232213Ribosomal protein S11
13121314141379LIM domain
64553730Regulator of chromosome condensation (RCC1) repeat
22232213Ribosomal protein S13/S18
11222210Tau and MAP protein, tubulin-binding repeat
88NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
32222213chorismate binding enzyme
3233632060s Acidic ribosomal protein
1112117CUB domain
44335322Prenyltransferase and squalene oxidase repeat
778712748Protein kinase C terminal domain
211116Single-strand binding protein family
22Type II/IV secretion system protein
1111116S-adenosylmethionine synthetase, N-terminal domain
161417181916100Bromodomain
12131011111168Acyl-CoA dehydrogenase, C-terminal domain
15151516181796Ubiquitin carboxyl-terminal hydrolase
11114Ribosomal protein L36
23218Ribonuclease T2 family
65556633HSF-type DNA-binding
22222212SRP54-type protein, GTPase domain
1111116Urease alpha-subunit, N-terminal domain
33433319Serine carboxypeptidase
11111210101064Phosphatidylinositol 3- and 4-kinase
1111116Transketolase, thiamine diphosphate binding domain
13212211WHEP-TRS domain
22222212Inositol monophosphatase family
43545425Glutaredoxin
111216Isocitrate lyase family
22222212Serine hydroxymethyltransferase
2121129Iron-containing alcohol dehydrogenase
33332317Ribosomal protein L10
69466435KOW motif
11114Ribosomal protein L34
111115Ribosomal protein L33
33332317RF-1 domain
2111218Sodium:solute symporter family
1211218Imidazoleglycerol-phosphate dehydratase
22122110DNA polymerase family A
1111116IMP dehydrogenase / GMP reductase domain
21223212Glucose-6-phosphate dehydrogenase, NAD binding domain
109899853Protein phosphatase 2C
45666532Nucleotidyl transferase
23332316Carbonic anhydrase
23222213Phosphoribulokinase / Uridine kinase family
67987845Fatty acid desaturase
66665635MutS domain V
1211117Delta-aminolevulinic acid dehydratase
1111217Arginase family
88688947MCM P-loop domain
22222212Squalene/phytoene synthase
17151514191393FHA domain
33NADH-ubiquinone/plastoquinone oxidoreductase chain 6
221623282817134AMP-binding enzyme
55766433G-protein alpha subunit
10991112859HMG (high mobility group) box
11Cytochrome c oxidase subunit III
331729283120158His Kinase A (phospho-acceptor) domain
665610740Armadillo/beta-catenin-like repeat
191520185521148Tetratricopeptide repeat
734611839Ion transport protein
22232213DNA gyrase/topoisomerase IV, subunit A
676813949BRCA1 C Terminus (BRCT) domain
77859743Glycosyl transferases group 1
42229221Glycosyl transferase family 2
44245322SAM domain (Sterile alpha motif)
31222313linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
1135Pectate lyase
2114ribonuclease
1111116Urease, gamma subunit
33333318CoA-ligase
106111312557Phosphopantetheine attachment site
23334318Formyl transferase
11114Cellulose binding domain
10101010101262Metallopeptidase family M24
810712609106Leucine Rich Repeat
629827557alpha/beta hydrolase fold
33344219RNA polymerase Rpb2, domain 6
54657835PB1 domain
22222212Staphylococcal nuclease homologue
19171616101795Rab-GTPase-TBC domain
1111116Tudor domain
1112117WH1 domain
62556428Zinc finger, ZZ type
1211218HRDC domain
16121215221996CBS domain
33333217Ribosomal protein L13
22222212Ribosomal protein L4/L1 family
1111116Clp protease
34324319S1 RNA binding domain
11114HIUase/Transthyretin family
55447530AhpC/TSA family
44444424tRNA synthetases class I (W and Y)
32212111UvrD/REP helicase N-terminal domain
99898750Rhodanese-like domain
495614846Universal stress protein family
251623232816131Acetyltransferase (GNAT) family
1111116SecE/Sec61-gamma subunits of protein translocation complex
1212129C-terminal regulatory domain of Threonine dehydratase
22222111AIR synthase related protein, N-terminal domain
76777741tRNA synthetase class II core domain (G, H, P, S and T)
1211117SpoU rRNA Methylase family
24354220Tetrapyrrole (Corrin/Porphyrin) Methylases
1111116Glycosyl transferase family, a/b domain
22PDZ domain
1111116Class II Aldolase and Adducin N-terminal domain
32431316Diacylglycerol kinase accessory domain
43447729Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
8899121258Fes/CIP4, and EFC/F-BAR homology domain
10101013211478IQ calmodulin-binding motif
22222212Phosphoinositide 3-kinase family, accessory domain (PIK domain)
1111228Phospholipase D Active site motif
716121171568Regulator of G protein signaling domain
66777740GTPase-activator protein for Ras-like GTPase
17161616141796RasGEF domain
13111212111271RasGEF N-terminal motif
15131316231595RhoGAP domain
151620172018106RhoGEF domain
36435526SPRY domain
33443320RNA polymerase Rpb1, domain 2
23332114Guanylate kinase
76667739Gelsolin repeat
1381013181072UBA/TS-N domain
231322153116120PHD-finger
112Filamin/ABP280 repeat
22221211GGL domain
95667639HECT-domain (ubiquitin-transferase)
11116111Helix-hairpin-helix motif
11BRCA2 repeat
32348323MSP (Major sperm protein) domain
33334319Ribonuclease III domain
55452526Region in Clathrin and VPS
22333215RanBP1 domain
1112218PPIC-type PPIASE domain
53254524Zn-finger in Ran binding protein and others
1213121527887Zinc finger C-x8-C-x5-C-x3-H type (and similar)
23324317B-box zinc finger
44442422Poly(ADP-ribose) polymerase catalytic domain
12232212Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
985127313120F-box domain
21221210Calpain family cysteine protease
111115Copper fist DNA binding domain
1188791053CRAL/TRIO domain
12917892883BTB/POZ domain
312219Ricin-type beta-trefoil lectin domain
2211118Inhibitor of Apoptosis domain
33344623Voltage gated chloride channel
32642320Caspase domain
76559436GDSL-like Lipase/Acylhydrolase
212117Poly-adenylate binding protein, unique domain
1111217POLO box duplicated region
272132282217147ABC transporter transmembrane region
35456427FAD binding domain
74586333Condensation domain
1111116S-adenosyl-L-homocysteine hydrolase, NAD binding domain
22535320HAMP domain
22222212ribosomal L5P family C-terminus
78876743Insulinase (Peptidase family M16)
45444425Dehydrogenase E1 component
1111116Lumazine binding domain
76777842Elongation factor G C-terminus
11Plectin repeat
44335423HMGL-like
32333519DnaJ central domain
123Starch binding domain
33343319Ribosomal protein L1p/L10e family
13141114121579Cation transporting ATPase, C-terminus
11121115161681Cation transporter/ATPase, N-terminus
111115dUTPase
44444424Aconitase C-terminal domain
33344320Amino acid kinase family
1111116N-(5'phosphoribosyl)anthranilate (PRA) isomerase
43423319Acyl transferase domain
1111116Urease beta subunit
171617204219131haloacid dehalogenase-like hydrolase
11114Glycosyl hydrolases family 2
49948539Glycosyl hydrolases family 18
1111116Proliferating cell nuclear antigen, N-terminal domain
111115Translation initiation factor IF-3, C-terminal domain
1113Acylphosphatase
1111116Adenylosuccinate synthetase
1111116Asparaginase, N-terminal
32344319Peptidase S24-like
1111116Inorganic pyrophosphatase
31233315Glycosyl hydrolases family 16
44452423Glycosyl hydrolases family 15
33343218NADH:flavin oxidoreductase / NADH oxidase family
322222133-hydroxyacyl-CoA dehydrogenase, C-terminal domain
22114212Glycosyl hydrolase family 20, catalytic domain
54456428HhH-GPD superfamily base excision DNA repair protein
1111116AIR carboxylase
12122210GMC oxidoreductase
32234317Asparagine synthase
1124Fungal cellulose binding domain
12910109858Septin
1111116Homoserine dehydrogenase
23443420Flavin-binding monooxygenase-like
11LPXTG cell wall anchor motif
23344420tRNA synthetases class I (E and Q), catalytic domain
1111116tRNA synthetases class I (R)
44252320XPG N-terminal domain
665913544Metallo-beta-lactamase superfamily
112292127F5/8 type C domain
33433420Choline/Carnitine o-acyltransferase
1111116Putative esterase
11Furin-like cysteine rich region
1111116Glycosyl hydrolase family 9
1111116Ferrochelatase
22322314Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1111116Arginosuccinate synthase
1111116Electron transfer flavoprotein FAD-binding domain
33333318RNB domain
11Dioxygenase
44444424CNH domain
55556531Diacylglycerol kinase catalytic domain
1067810748Dual specificity phosphatase, catalytic domain
12222211MyTH4 domain
33333318P21-Rho-binding domain
16141615191595PX domain
56549736Ras association (RalGDS/AF-6) domain
65666534UBX domain
34444322VHS domain
1111116Phosphoinositide 3-kinase C2
22222212DAHP synthetase I family
34233318Carbon-nitrogen hydrolase
21126N-acetyltransferase
44Geminivirus Rep catalytic domain
12222211Prephenate dehydratase
54568533Syntaxin
23334419Pumilio-family RNA binding repeat
76787641Histone-like transcription factor (CBF/NF-Y) and archaeal histone
22222212Pterin binding enzyme
1111217ER lumen protein retaining receptor
1111116Glycoprotease family
1111116Histidinol dehydrogenase
42444523impB/mucB/samB family
22
111115Ribosomal L15
34431318Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
1111116Ribosomal prokaryotic L21 protein
1111116Ribosomal L28 family
1211117Ribosomal L29 protein
1211117Ribosomal L39 protein
1221118Ribosomal S17
1111116Ribulose-phosphate 3 epimerase family
123Glycosyl hydrolase family 7
1168AP2 domain
33333419RNA pseudouridylate synthase
65769538Histone deacetylase domain
22Glycosyltransferase family 10 (fucosyltransferase) C-term
21322212POT family
32122313PWWP domain
191921191920117SET domain
33336523Isochorismatase family
111216Permease family
1111116Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
211116ATP P2X receptor
43343320XPG I-region
1111116Acetokinase family
113319DNA photolyase
112NlpC/P60 family
11114Nitroreductase family
23223315Cytosol aminopeptidase family, catalytic domain
33Sulfatase
2111166,7-dimethyl-8-ribityllumazine synthase
1111116Ribosomal protein S16
34334421Acyl CoA binding protein
65556532Cullin family
111137Elongation factor TS
32223214FAD binding domain
1113O-methyltransferase domain
73756735EamA-like transporter family
11
88888747ThiF family
1211117Ribosomal family S4e
22229219Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
1111116T-box
12232111Ammonium Transporter Family
11RNA helicase
33555526Sulfate permease family
32223214MATH domain
11114Uncharacterized protein family UPF0004
1111116Dehydratase family
1111116Transaldolase/Fructose-6-phosphate aldolase
22222212Mechanosensitive ion channel
2211118GTP cyclohydrolase II
11111163,4-dihydroxy-2-butanone 4-phosphate synthase
43444423Adaptor complexes medium subunit family
55566431Exonuclease
12122210Dipeptidyl peptidase IV (DPP IV) N-terminal region
12115Glycosyl hydrolase family 3 N terminal domain
111115Ribosomal protein L44
112116Sodium:sulfate symporter transmembrane region
1111116DNA-dependent RNA polymerase
11114FAD binding domain in molybdopterin dehydrogenase
1111116Glycosyl transferase family 4
1111116HCO3- transporter family
1111116Nucleosome assembly protein (NAP)
75676536Synaptobrevin
1111116GMP synthase C terminal domain
32332215Adenosine/AMP deaminase
1225Barwin family