PFAM Domains • Meredithblackwellia eburnea MCA 4105 v1.0
Annotations/GenomesAgahy1Croqu1Hetpy1Mellp1Mereb1Mixos1Pucgr1Rhosp1Schco3Trisp1TotalAnnotation Description
PFAMs
5,7225,9955,5785,1327,8995,5626,7845,7288,5905,57762,567
117 transmembrane receptor (rhodopsin family)
30323327373035334332332ATPase family associated with various cellular activities (AAA)
30282828432925304668355ABC transporter
444444544441ATP synthase alpha/beta family, nucleotide-binding domain
111216EGF-like domain
13121412131317131513135Elongation factor Tu GTP binding domain
97971087813987Helix-loop-helix DNA-binding domain
15134923Hsp20/alpha crystallin family
887797977776Hsp70 protein
888888879779KH domain
111111118SH2 domain
23232525222028232720236SH3 domain
9995101099111091Actin
17151714191716176016208Ankyrin repeat
22PAN domain
797776877772ADP-ribosylation factor family
1119132330381612266194Eukaryotic aspartyl protease
333243333330Cyclic nucleotide-binding domain
112Cytochrome b(C-terminal)/b6/petD
1124Cytochrome b/b6/petB
111111111110Cytochrome c
11114111323Double-stranded RNA binding motif
20161622181521132015176EF hand
1111112111114Fe-4S binding domain
111112119Fibronectin type III domain
112Globin
76441898615986Glutathione S-transferase, C-terminal domain
111231121114Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
8782878611570Homeodomain
11114Laminin EGF domain
222322222221lactate/malate dehydrogenase, NAD binding domain
545355556649Myosin head (motor domain)
13261023291416711431283Cytochrome P450
1081261421181139511298162951,169Protein kinase domain
111011815108121110106Pyridine nucleotide-disulphide oxidoreductase
25262530282425212726257Ras family
11914102515916124125Response regulator receiver domain
22621421910571RNase H
55696470615785527059642RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
2727Retroviral aspartyl protease
11112Reverse transcriptase (RNA-dependent DNA polymerase)
33215225Copper/zinc superoxide dismutase (SODC)
221311113217Iron/manganese superoxide dismutases, alpha-hairpin domain
4959351433560Subtilase family
34222229751316344117303Sugar (and other) transporter
119118138811139101Thioredoxin
455563555649Tubulin/FtsZ family, GTPase domain
22414113220von Willebrand factor type A domain
304535797731523310037519Zinc finger, C2H2 type
344131364135110357130464Zinc finger, C3HC4 type (RING finger)
94216489814282215319Zinc knuckle
225182222329Protein-tyrosine phosphatase
5127293110850294411242523short chain dehydrogenase
22121913501911264727246Zinc-binding dehydrogenase
3745104464754Thiolase, N-terminal domain
121111213518Beta-ketoacyl synthase, N-terminal domain
5343532434362Fe-2S iron-sulfur cluster binding domain
111111121111Enolase, C-terminal TIM barrel domain
145Cytochrome C and Quinol oxidase polypeptide I
11Cytochrome C oxidase subunit II, periplasmic domain
678788778773Glutamine amidotransferase class-I
91010910111291010100TCP-1/cpn60 chaperonin family
112ATP synthase A chain
232423313124Glutamine synthetase, catalytic domain
111121111212Triosephosphate isomerase
81012131512109912110E1-E2 ATPase
15162919271124172213193Core histone H2A/H2B/H3/H4
1124Copper binding proteins, plastocyanin/azurin family
15361424412152Alpha amylase, catalytic domain
233334515332Phorbol esters/diacylglycerol binding domain (C1 domain)
685885864563Bacterial transferase hexapeptide (six repeats)
233533533535tRNA synthetases class I (I, L, M and V)
118912991011139101Cyclin, N-terminal domain
31092312869263109Carboxylesterase family
444444644442DNA polymerase family B
343444333435ATP synthase subunit C
122222222118Peroxidase
22843625Beta-lactamase
222322619C-5 cytosine-specific DNA methylase
213NADH dehydrogenase
21221818221917202418199Calcineurin-like phosphoesterase
261753926344Cellulase (glycosyl hydrolase family 5)
544444446847tRNA synthetases class II (D, K and N)
33333332443434363736352Mitochondrial carrier protein
16161511181315171611148Aminotransferase class I and II
666567867764Phosphoribosyl transferase domain
13121314121114111413127Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
111111111110Phosphoglycerate kinase
222232222221Ribosomal protein S4/S9 N-terminal domain
222332322223Ribosomal protein S12/S23
11Bacterial regulatory helix-turn-helix proteins, AraC family
111111111110Chaperonin 10 Kd subunit
1310141016137111812124C2 domain
20202014232018181920192PH domain
7494117586667bZIP transcription factor
1013121227812111610131Aldehyde dehydrogenase family
523354341932924458848600Fungal Zn(2)-Cys(6) binuclear cluster domain
17181715302119192521202Cytochrome b5-like Heme/Steroid binding domain
112116Oxidoreductase molybdopterin binding domain
6677776611770Oxidoreductase NAD-binding domain
18172030231658222218244SNF2 family N-terminal domain
222222222220Ribosomal protein S7p/S5e
17201719211917192119189Ubiquitin-conjugating enzyme
555565275550Isocitrate/isopropylmalate dehydrogenase
222222222220Ribosomal Proteins L2, RNA binding domain
222223133222Hsp90 protein
222222222220Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
111111111110Dihydrofolate reductase
112Chitin recognition protein
5104105373552Cysteine-rich secretory protein family
111111211111Ribosomal protein S3, C-terminal domain
111137Cupin
123Annexin
213Eukaryotic-type carbonic anhydrase
2335333333312-oxoacid dehydrogenases acyltransferase (catalytic domain)
251822622131Catalase
121211211113Disintegrin
11114UDP-glucoronosyl and UDP-glucosyl transferase
7564951155562Aminotransferase class-III
22222222218Ribosomal protein S19
111111211111DNA gyrase B
321442144328Thiamine pyrophosphate enzyme, central domain
333333333330Lyase
112122122115Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
11Sodium:neurotransmitter symporter family
112111111111Adenylate and Guanylate cyclase catalytic domain
111111111110ATP synthase delta (OSCP) subunit
111111111110Orotidine 5'-phosphate decarboxylase / HUMPS family
211111122113Indole-3-glycerol phosphate synthase
11Neurohypophysial hormones, N-terminal Domain
41211212115Aromatic amino acid lyase
111111111110Pyruvate kinase, barrel domain
9119119713810693Kinesin motor domain
26332450272532273025299DnaJ domain
14191414141415131414145Proteasome subunit
213316581083270Major intrinsic protein
111111111110ATP synthase
1135Glycosyl hydrolase family 1
1111111183'5'-cyclic nucleotide phosphodiesterase
111111111110Profilin
121211111213Ribosomal protein L22p/L17e
222222222220Ribosomal protein L14p/L23e
12111011149914137110Ubiquitin family
444245347441Cofilin/tropomyosin-type actin-binding protein
22222222211914-3-3 protein
221243333326Alkaline phosphatase
111212311Zinc carboxypeptidase
2291012361012146012197Aldo/keto reductase family
12121410337711119126Myb-like DNA-binding domain
554333228338Forkhead domain
1421121214Glycosyl hydrolases family 32 N-terminal domain
111111111110Ribosomal protein L16p/L10e
222121222218Ribosomal protein S14p/S29e
453454335238FKBP-type peptidyl-prolyl cis-trans isomerase
111111111110Glutathione peroxidase
111211112213
446543547749Flavodoxin
11Protamine P1
11Tropomyosin
111111111110Calreticulin family
82111Common central domain of tyrosinase
545375659352Aminotransferase class-V
211122123217Ribonucleotide reductase, small chain
36363945453969416635451DEAD/DEAH box helicase
646370917863158739765822Helicase conserved C-terminal domain
111111311112EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
212121122216Ribosomal protein L23
111111111110Pyridoxal-dependent decarboxylase, C-terminal sheet domain
112111111111Ribosomal protein L5
553555257547Pyridoxal-dependent decarboxylase conserved domain
122222213219Citrate synthase, C-terminal domain
545555655449GHMP kinases N terminal domain
455665565754Biotin carboxylase, N-terminal domain
111211211213Tryptophan synthase alpha chain
766697868972Pyridoxal-phosphate dependent enzyme
11121015121210111414121NUDIX domain
453354546443pfkB family carbohydrate kinase
131139Glycosyl hydrolases family 28
11Luciferase-like monooxygenase
222222223221Ribosomal protein L3
221222112217Ribosomal protein L11, RNA binding domain
1379613101311913104Histidine phosphatase superfamily (branch 1)
111111111110Thymidylate synthase
444444554442ATP synthase alpha/beta chain, C terminal domain
454433545441Calponin homology (CH) domain
464445755448Glutamine amidotransferases class-II
223221222220Ribosomal protein S15
2323213420'Cold-shock' DNA-binding domain
32318731138Thaumatin family
121111111111Fructose-1-6-bisphosphatase, N-terminal domain
211111111111Ribonucleotide reductase, all-alpha domain
222222322221Ribosomal protein S2
334343234938SRF-type transcription factor (DNA-binding and dimerisation domain)
1071069871012786GATA zinc finger
14192117371220172111189Amino acid permease
545256457548Prolyl oligopeptidase family
121112111213Ribosomal protein L30p/L7e
654378579357Histidine phosphatase superfamily (branch 2)
111111111110Respiratory-chain NADH dehydrogenase, 30 Kd subunit
444464444442Aconitase family (aconitate hydratase)
655521Glycosyl hydrolase family 10
1123111212Glycosyl hydrolases family 17
222222222220Ribosomal protein S5, N-terminal domain
132222122118Nucleoside diphosphate kinase
1113Tetraspanin family
111111112111Ribosomal protein S10p/S20e
3452135225Arrestin (or S-antigen), N-terminal domain
121111111111Phosphoglucose isomerase
1111116Carbohydrate phosphorylase
111111111110SecY translocase
111111112111Respiratory-chain NADH dehydrogenase, 49 Kd subunit
222222322221Ribosomal protein L6
333633436438Polyprenyl synthetase
222322422223Hexokinase
545333639344Dynamin family
11Biopterin-dependent aromatic amino acid hydroxylase
111111111211Transcription factor TFIID (or TATA-binding protein, TBP)
432444342131Rieske [2Fe-2S] domain
11Bacterial regulatory proteins, lacI family
111115Phytochrome region
224Proton-conducting membrane transporter
577967789974Biotin-requiring enzyme
111211111111Phosphofructokinase
222122222219Ribosomal protein S17
111111111110Hydroxymethylglutaryl-coenzyme A reductase
332232323225FGGY family of carbohydrate kinases, N-terminal domain
11Sodium:dicarboxylate symporter family
4879128879880Enoyl-CoA hydratase/isomerase
222222222220Ribosomal protein S9/S16
352232322226Transcription factor TFIIB repeat
556575556554Cytidine and deoxycytidylate deaminase zinc-binding region
111111121111Molybdopterin oxidoreductase
6753818429475Chromo (CHRromatin Organisation MOdifier) domain
211111114215Phosphatidylinositol-specific phospholipase C, Y domain
222211213218Phosphatidylinositol-specific phospholipase C, X domain
9363144167659D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
11212223115Malic enzyme, N-terminal domain
2111111121126-phosphogluconate dehydrogenase, C-terminal domain
420318511246174Multicopper oxidase
22Granulin
9967117669676WW domain
111121122113Ribosomal RNA adenine dimethylase
9897971051081011061041321051,053WD domain, G-beta repeat
124233224528Heavy-metal-associated domain
333533433333Adenylate kinase
211222221217Phosphoglucomutase/phosphomannomutase, C-terminal domain
211122221216Ribosomal protein S8
111111221112Ribosomal protein S11
665664646554LIM domain
11Matrixin
422234123326Regulator of chromosome condensation (RCC1) repeat
222222232221Ribosomal protein S13/S18
112NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
122222422120chorismate binding enzyme
33333323332960s Acidic ribosomal protein
567854944456Prenyltransferase and squalene oxidase repeat
677675857563Protein kinase C terminal domain
112111119Single-strand binding protein family
111111211111S-adenosylmethionine synthetase, N-terminal domain
889109989111091Bromodomain
288101610101191195Acyl-CoA dehydrogenase, C-terminal domain
16191518171214141712154Ubiquitin carboxyl-terminal hydrolase
111111118Ribosomal protein L36
111121119Ribonuclease T2 family
6576147684770HSF-type DNA-binding
22222222218SRP54-type protein, GTPase domain
11111121211Urease alpha-subunit, N-terminal domain
7105116712410375Serine carboxypeptidase
8771188878981Phosphatidylinositol 3- and 4-kinase
211132123117Transketolase, thiamine diphosphate binding domain
11Glycosyl hydrolases family 11
1111122110WHEP-TRS domain
322232237228Inositol monophosphatase family
544565455447Glutaredoxin
222242223223Isocitrate lyase family
111111211111Serine hydroxymethyltransferase
111122124116Iron-containing alcohol dehydrogenase
122212222218Ribosomal protein L10
436653345342KOW motif
111111118Ribosomal protein L34
111115Ribosomal protein L33
322231133222RF-1 domain
2521212Sodium:solute symporter family
111111111110Imidazoleglycerol-phosphate dehydratase
111111111110DNA polymerase family A
111111111110IMP dehydrogenase / GMP reductase domain
111211112112Glucose-6-phosphate dehydrogenase, NAD binding domain
5665656613664Protein phosphatase 2C
242422321123Nucleotidyl transferase
331243222123Carbonic anhydrase
111111118Phosphoribulokinase / Uridine kinase family
5657958413668Fatty acid desaturase
666566566860MutS domain V
111111111110Delta-aminolevulinic acid dehydratase
212132124119Arginase family
666866766663MCM P-loop domain
221212221217Squalene/phytoene synthase
858685489667FHA domain
8201213291912143123181AMP-binding enzyme
9121161134415580G-protein alpha subunit
871381181173510118HMG (high mobility group) box
112NADH-ubiquinone/plastoquinone oxidoreductase, chain 3
112Cytochrome c oxidase subunit III
7611622114139190His Kinase A (phospho-acceptor) domain
243333224228Armadillo/beta-catenin-like repeat
24222321232027192723229Tetratricopeptide repeat
221252223122Ion transport protein
131111211113DNA gyrase/topoisomerase IV, subunit A
1098691161210788BRCA1 C Terminus (BRCT) domain
6555116697464Glycosyl transferases group 1
3433103354139Glycosyl transferase family 2
1121139SAM domain (Sterile alpha motif)
1111113110linker histone H1 and H5 family
111111111110Ribosomal protein L7/L12 C-terminal domain
732416Pectate lyase
22ribonuclease
11111121211Urease, gamma subunit
333353433535CoA-ligase
3422434316445Phosphopantetheine attachment site
332322222324Formyl transferase
77971067811779Metallopeptidase family M24
15171620171115171613157Leucine Rich Repeat
20201510412120135115226alpha/beta hydrolase fold
333333333330RNA polymerase Rpb2, domain 6
233253445233PB1 domain
223222222120Staphylococcal nuclease homologue
999911106811890Rab-GTPase-TBC domain
1111111119Tudor domain
111111211111WH1 domain
343332433230Zinc finger, ZZ type
1112117HRDC domain
777497789772CBS domain
222522222223Ribosomal protein L13
222322222221Ribosomal protein L4/L1 family
1111116Clp protease
444444534238S1 RNA binding domain
111111111211HIUase/Transthyretin family
323244228434AhpC/TSA family
444444444440tRNA synthetases class I (W and Y)
212131111114UvrD/REP helicase N-terminal domain
465646434446Rhodanese-like domain
532252122226Universal stress protein family
16111511262211213013176Acetyltransferase (GNAT) family
1111111119SecE/Sec61-gamma subunits of protein translocation complex
111111111110C-terminal regulatory domain of Threonine dehydratase
222222222220AIR synthase related protein, N-terminal domain
786767866768tRNA synthetase class II core domain (G, H, P, S and T)
11Phage integrase family
212222122218Tetrapyrrole (Corrin/Porphyrin) Methylases
111111112111Glycosyl transferase family, a/b domain
11PDZ domain
223271232226Class II Aldolase and Adducin N-terminal domain
22Adenoviral fibre protein (repeat/shaft region)
331223314224Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
563645736247Fes/CIP4, and EFC/F-BAR homology domain
326332244231IQ calmodulin-binding motif
222222222220Phosphoinositide 3-kinase family, accessory domain (PIK domain)
333333443332Phospholipase D Active site motif
111111111110Regulator of G protein signaling domain
344443534438GTPase-activator protein for Ras-like GTPase
444554446343RasGEF domain
444354446341RasGEF N-terminal motif
13111213151013131311124RhoGAP domain
1215811121114101310116RhoGEF domain
323233324328SPRY domain
333333333330RNA polymerase Rpb1, domain 2
111111111110Guanylate kinase
344353333233Gelsolin repeat
787599879978UBA/TS-N domain
16161812181612171516156PHD-finger
111111129GGL domain
456574776556HECT-domain (ubiquitin-transferase)
22122132116Helix-hairpin-helix motif
112BRCA2 repeat
111111112111MSP (Major sperm protein) domain
3131826116243Ribonuclease III domain
322122122219Region in Clathrin and VPS
323322324327RanBP1 domain
122222222219PPIC-type PPIASE domain
111148Zn-finger in Ran binding protein and others
1514141414129172813150Zinc finger C-x8-C-x5-C-x3-H type (and similar)
11B-box zinc finger
52211020Poly(ADP-ribose) polymerase catalytic domain
11121112111Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
362134415825264126435581F-box domain