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PFAM Domains • Phlebia centrifuga FBCC195
Annotations/GenomesCylto1Denbi1Phlbr1Phlcen1Punst1Schpa1TotalAnnotation Description
PFAMs
8,38413,2149,1608,6467,9088,85856,170
407053474151302ATPase family associated with various cellular activities (AAA)
526053524354314ABC transporter
45445426ATP synthase alpha/beta family, nucleotide-binding domain
1124EGF-like domain
16161615141693Elongation factor Tu GTP binding domain
12131311111272Helix-loop-helix DNA-binding domain
516888752Hsp20/alpha crystallin family
93612149989Hsp70 protein
819877857KH domain
121116SH2 domain
283626172826161SH3 domain
10181311111275Actin
27703352228185Ankyrin repeat
11PAN domain
79768845ADP-ribosylation factor family
184356414427229Eukaryotic aspartyl protease
34333319Cyclic nucleotide-binding domain
1111116Cytochrome c
6255461359Double-stranded RNA binding motif
22272121921112EF hand
21111174Fe-4S binding domain
1211117Fibronectin type III domain
1113Globin
172715141816107Glutathione S-transferase, C-terminal domain
1111116Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
9121188957Homeodomain
11Laminin EGF domain
23222213lactate/malate dehydrogenase, NAD binding domain
610755538Myosin head (motor domain)
1035182371301382061,332Cytochrome P450
1862102012042142921,307Protein kinase domain
163319121516111Pyridine nucleotide-disulphide oxidoreductase
253725232624160Ras family
10131211211279Response regulator receiver domain
8581524114120RNase H
737570606462404RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
33Retroviral aspartyl protease
53439Reverse transcriptase (RNA-dependent DNA polymerase)
21216Copper/zinc superoxide dismutase (SODC)
22222212Iron/manganese superoxide dismutases, alpha-hairpin domain
49684637Subtilase family
557134333028251Sugar (and other) transporter
12131399965Thioredoxin
55556430Tubulin/FtsZ family, GTPase domain
4491725von Willebrand factor type A domain
10511567176656426Zinc finger, C2H2 type
62886785757339Zinc finger, C3HC4 type (RING finger)
189018122720185Zinc knuckle
22222212Protein-tyrosine phosphatase
80157101609897593short chain dehydrogenase
718164335142342Zinc-binding dehydrogenase
55765432Thiolase, N-terminal domain
2111046235Beta-ketoacyl synthase, N-terminal domain
333133162Fe-2S iron-sulfur cluster binding domain
1121128Enolase, C-terminal TIM barrel domain
11Cytochrome C and Quinol oxidase polypeptide I
78687844Glutamine amidotransferase class-I
916913101067TCP-1/cpn60 chaperonin family
33523319Glutamine synthetase, catalytic domain
1121117Triosephosphate isomerase
11171515101179E1-E2 ATPase
182318151417105Core histone H2A/H2B/H3/H4
112116Copper binding proteins, plastocyanin/azurin family
12157791161Alpha amylase, catalytic domain
65655532Phorbol esters/diacylglycerol binding domain (C1 domain)
58457635Bacterial transferase hexapeptide (six repeats)
33443421tRNA synthetases class I (I, L, M and V)
1314141191172Cyclin, N-terminal domain
25802492517180Carboxylesterase family
45444324DNA polymerase family B
44313318ATP synthase subunit C
214169131973Peroxidase
619968452Beta-lactamase
45444526C-5 cytosine-specific DNA methylase
263527172526156Calcineurin-like phosphoesterase
1214151491276Cellulase (glycosyl hydrolase family 5)
58766537tRNA synthetases class II (D, K and N)
384638353834229Mitochondrial carrier protein
22recA bacterial DNA recombination protein
16141420161393Aminotransferase class I and II
79735637Phosphoribosyl transferase domain
153014151313100Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
1111116Phosphoglycerate kinase
21212210Ribosomal protein S4/S9 N-terminal domain
22222313Ribosomal protein S12/S23
1111116Chaperonin 10 Kd subunit
172116201812104C2 domain
16231862119103PH domain
129886851bZIP transcription factor
132723201515113Aldehyde dehydrogenase family
150131712255118547Fungal Zn(2)-Cys(6) binuclear cluster domain
233832202120154Cytochrome b5-like Heme/Steroid binding domain
26644123Oxidoreductase molybdopterin binding domain
8131310111065Oxidoreductase NAD-binding domain
253426242322154SNF2 family N-terminal domain
21122210Ribosomal protein S7p/S5e
222723161926133Ubiquitin-conjugating enzyme
57565634Isocitrate/isopropylmalate dehydrogenase
22222212Ribosomal Proteins L2, RNA binding domain
33422216Hsp90 protein
32222213Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
3111118Dihydrofolate reductase
2114Chitin recognition protein
67211421Cysteine-rich secretory protein family
1111116Ribosomal protein S3, C-terminal domain
161164331Cupin
145Annexin
22Eukaryotic-type carbonic anhydrase
224Chalcone and stilbene synthases, N-terminal domain
363343222-oxoacid dehydrogenases acyltransferase (catalytic domain)
36332219Catalase
112116Disintegrin
4186512146UDP-glucoronosyl and UDP-glucosyl transferase
613556540Aminotransferase class-III
22212211Ribosomal protein S19
1211117DNA gyrase B
53333320Thiamine pyrophosphate enzyme, central domain
36334322Lyase
13222111Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
1411119Adenylate and Guanylate cyclase catalytic domain
1211117ATP synthase delta (OSCP) subunit
1111116Orotidine 5'-phosphate decarboxylase / HUMPS family
22113211Indole-3-glycerol phosphate synthase
2311119Aromatic amino acid lyase
1111116Pyruvate kinase, barrel domain
917101211968Kinesin motor domain
323130222832175DnaJ domain
14161514141487Proteasome subunit
312634432Major intrinsic protein
1111116ATP synthase
15221415Glycosyl hydrolase family 1
11111163'5'-cyclic nucleotide phosphodiesterase
1121117Profilin
1211218Ribosomal protein L22p/L17e
22222212Ribosomal protein L14p/L23e
223313131218111Ubiquitin family
56555430Cofilin/tropomyosin-type actin-binding protein
2422121314-3-3 protein
2432314Alkaline phosphatase
1111116Zinc carboxypeptidase
3913679465455409Aldo/keto reductase family
1618143121376Myb-like DNA-binding domain
77635533Forkhead domain
213Glycosyl hydrolases family 32 N-terminal domain
121217Ribosomal protein L16p/L10e
22211210Ribosomal protein S14p/S29e
45543324FKBP-type peptidyl-prolyl cis-trans isomerase
1111116Glutathione peroxidase
222219
6111277851Flavodoxin
1111116Calreticulin family
63913123Common central domain of tyrosinase
107865743Aminotransferase class-V
23741522Ribonucleotide reductase, small chain
5412066595062411DEAD/DEAH box helicase
93155115758796621Helicase conserved C-terminal domain
112Fructose-bisphosphate aldolase class-I
1221118EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
23222213Ribosomal protein L23
111115Pyridoxal-dependent decarboxylase, C-terminal sheet domain
1111116Ribosomal protein L5
38344628Pyridoxal-dependent decarboxylase conserved domain
33353320Citrate synthase, C-terminal domain
65535529GHMP kinases N terminal domain
67866639Biotin carboxylase, N-terminal domain
1111116Tryptophan synthase alpha chain
99898750Pyridoxal-phosphate dependent enzyme
14221513141391NUDIX domain
56434527pfkB family carbohydrate kinase
9125413548Glycosyl hydrolases family 28
23222213Ribosomal protein L3
22221211Ribosomal protein L11, RNA binding domain
8178810960Histidine phosphatase superfamily (branch 1)
1121117Thymidylate synthase
11Lipoxygenase
45444425ATP synthase alpha/beta chain, C terminal domain
47424324Calponin homology (CH) domain
57524528Glutamine amidotransferases class-II
28312218Ribosomal protein S15
12564128Thaumatin family
1111116Fructose-1-6-bisphosphatase, N-terminal domain
22322112Ribonucleotide reductase, all-alpha domain
22221211Ribosomal protein S2
35225320SRF-type transcription factor (DNA-binding and dimerisation domain)
1416137121274GATA zinc finger
243029142221140Amino acid permease
215564638Prolyl oligopeptidase family
2111218Ribosomal protein L30p/L7e
9171811111177Histidine phosphatase superfamily (branch 2)
1111116Respiratory-chain NADH dehydrogenase, 30 Kd subunit
48564431Aconitase family (aconitate hydratase)
313865540Glycosyl hydrolase family 10
3211119Glycosyl hydrolases family 17
22222212Ribosomal protein S5, N-terminal domain
14222213Nucleoside diphosphate kinase
11122411Tetraspanin family
11Galactoside-binding lectin
1222119Ribosomal protein S10p/S20e
23559327Arrestin (or S-antigen), N-terminal domain
1111116Phosphoglucose isomerase
1111116Carbohydrate phosphorylase
1113118SecY translocase
1111116Respiratory-chain NADH dehydrogenase, 49 Kd subunit
22222212Ribosomal protein L6
310634430Polyprenyl synthetase
22222212Hexokinase
812101981168Dynamin family
1311118Transcription factor TFIID (or TATA-binding protein, TBP)
45424322Rieske [2Fe-2S] domain
112Phytochrome region
8128691053Biotin-requiring enzyme
1121117Phosphofructokinase
22322213Ribosomal protein S17
1111116Hydroxymethylglutaryl-coenzyme A reductase
34434321FGGY family of carbohydrate kinases, N-terminal domain
119766948Enoyl-CoA hydratase/isomerase
22222212Ribosomal protein S9/S16
22221312Transcription factor TFIIB repeat
88856742Cytidine and deoxycytidylate deaminase zinc-binding region
1111116Molybdopterin oxidoreductase
10151712151584Chromo (CHRromatin Organisation MOdifier) domain
33112212Phosphatidylinositol-specific phospholipase C, Y domain
44262220Phosphatidylinositol-specific phospholipase C, X domain
87665739D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
33632219Malic enzyme, N-terminal domain
123211106-phosphogluconate dehydrogenase, C-terminal domain
84510513687Multicopper oxidase
9119710955WW domain
2222210Ribosomal RNA adenine dimethylase
1133131431271721721,040WD domain, G-beta repeat
11ATP synthase, Delta/Epsilon chain, long alpha-helix domain
33553322Heavy-metal-associated domain
44333320Adenylate kinase
12222110Phosphoglucomutase/phosphomannomutase, C-terminal domain
1212129Ribosomal protein S8
22222212Ribosomal protein S11
67366634LIM domain
11Matrixin
43334421Regulator of chromosome condensation (RCC1) repeat
22221211Ribosomal protein S13/S18
22221211chorismate binding enzyme
4233241860s Acidic ribosomal protein
46444426Prenyltransferase and squalene oxidase repeat
87646738Protein kinase C terminal domain
1111116Single-strand binding protein family
1111116S-adenosylmethionine synthetase, N-terminal domain
1116111071065Bromodomain
6171277958Acyl-CoA dehydrogenase, C-terminal domain
14161615141590Ubiquitin carboxyl-terminal hydrolase
112Ribosomal protein L36
22614318Ribonuclease T2 family
86984338HSF-type DNA-binding
23222213SRP54-type protein, GTPase domain
1111116Urease alpha-subunit, N-terminal domain
103228272219138Serine carboxypeptidase
710888950Phosphatidylinositol 3- and 4-kinase
33232114Transketolase, thiamine diphosphate binding domain
13116Glycosyl hydrolases family 11
11114WHEP-TRS domain
33332216Inositol monophosphatase family
58545431Glutaredoxin
34424320Isocitrate lyase family
1122118Serine hydroxymethyltransferase
33432318Iron-containing alcohol dehydrogenase
22222212Ribosomal protein L10
56545530KOW motif
1111116Ribosomal protein L34
34332217RF-1 domain
13323214Sodium:solute symporter family
111115Imidazoleglycerol-phosphate dehydratase
1111116DNA polymerase family A
1111116IMP dehydrogenase / GMP reductase domain
1111116Glucose-6-phosphate dehydrogenase, NAD binding domain
9129813960Protein phosphatase 2C
33332216Nucleotidyl transferase
518446441Carbonic anhydrase
1111116Phosphoribulokinase / Uridine kinase family
11192089976Fatty acid desaturase
66736634MutS domain V
1111116Delta-aminolevulinic acid dehydratase
317565339Arginase family
67666637MCM P-loop domain
1112117Squalene/phytoene synthase
12141498966FHA domain
308553422931270AMP-binding enzyme
15221412141592G-protein alpha subunit
312818171317124HMG (high mobility group) box
688916754His Kinase A (phospho-acceptor) domain
33344421Armadillo/beta-catenin-like repeat
3018231133436326Tetratricopeptide repeat
34722321Ion transport protein
1211117DNA gyrase/topoisomerase IV, subunit A
10910711754BRCA1 C Terminus (BRCT) domain
76688641Glycosyl transferases group 1
44534323Glycosyl transferase family 2
3216SAM domain (Sterile alpha motif)
46223320linker histone H1 and H5 family
1111116Ribosomal protein L7/L12 C-terminal domain
105318Pectate lyase
23112110ribonuclease
1111116Urease, gamma subunit
33332317CoA-ligase
9319139677Phosphopantetheine attachment site
22212211Formyl transferase
914119111064Metallopeptidase family M24
1519152151682Leucine Rich Repeat
539050114445293alpha/beta hydrolase fold
33333318RNA polymerase Rpb2, domain 6
65767435PB1 domain
22212211Staphylococcal nuclease homologue
101211911962Rab-GTPase-TBC domain
1112117Tudor domain
1111116WH1 domain
56447430Zinc finger, ZZ type
1111116HRDC domain
1112957852CBS domain
24222214Ribosomal protein L13
22222212Ribosomal protein L4/L1 family
6111110Clp protease
35445425S1 RNA binding domain
11215HIUase/Transthyretin family
68654534AhpC/TSA family
46544427tRNA synthetases class I (W and Y)
1412210UvrD/REP helicase N-terminal domain
57594434Rhodanese-like domain
22122211Universal stress protein family
35453673036189Acetyltransferase (GNAT) family
112116SecE/Sec61-gamma subunits of protein translocation complex
1111116C-terminal regulatory domain of Threonine dehydratase
22222212AIR synthase related protein, N-terminal domain
66966740tRNA synthetase class II core domain (G, H, P, S and T)
11SpoU rRNA Methylase family
2136Phage integrase family
24322215Tetrapyrrole (Corrin/Porphyrin) Methylases
15211111Glycosyl transferase family, a/b domain
232613Class II Aldolase and Adducin N-terminal domain
45443424Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
67645533Fes/CIP4, and EFC/F-BAR homology domain
36324624IQ calmodulin-binding motif
22222212Phosphoinositide 3-kinase family, accessory domain (PIK domain)
43423420Phospholipase D Active site motif
21141110Regulator of G protein signaling domain
54444526GTPase-activator protein for Ras-like GTPase
855691346RasGEF domain
8775111048RasGEF N-terminal motif
12141312111375RhoGAP domain
15191314141489RhoGEF domain
469144542SPRY domain
34333319RNA polymerase Rpb1, domain 2
1111116Guanylate kinase
45434525Gelsolin repeat
8237791064UBA/TS-N domain
212119131719110PHD-finger
21115GGL domain
55444527HECT-domain (ubiquitin-transferase)
113128Helix-hairpin-helix motif
111115MSP (Major sperm protein) domain
510847640Ribonuclease III domain
32242215Region in Clathrin and VPS
33332317RanBP1 domain
22222212PPIC-type PPIASE domain
11Phosphotyrosine interaction domain (PTB/PID)
333312Zn-finger in Ran binding protein and others
333324112221144Zinc finger C-x8-C-x5-C-x3-H type (and similar)
1111116B-box zinc finger
2101042533Poly(ADP-ribose) polymerase catalytic domain
22121210Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region
1872201211371325937F-box domain
31113110Elongation factor 1 gamma, conserved domain
1813215Calpain family cysteine protease
3221210Copper fist DNA binding domain
910857645CRAL/TRIO domain
9831412269180BTB/POZ domain
47284346Ricin-type beta-trefoil lectin domain
111115Inhibitor of Apoptosis domain
33322316Voltage gated chloride channel
162814146886Caspase domain
11224212758GDSL-like Lipase/Acylhydrolase
1211117Poly-adenylate binding protein, unique domain
1211117POLO box duplicated region
242430312622157ABC transporter transmembrane region
27291048Integrase core domain
47655633FAD binding domain
271111Condensation domain
1111116S-adenosyl-L-homocysteine hydrolase, NAD binding domain
3211119HAMP domain
22122211ribosomal L5P family C-terminus
56785637Insulinase (Peptidase family M16)
44544425Dehydrogenase E1 component
1111116Lumazine binding domain
89666742Elongation factor G C-terminus
58553430HMGL-like
44444424DnaJ central domain
53324219Starch binding domain
22232213Ribosomal protein L1p/L10e family
76554532Cation transporting ATPase, C-terminus
88776642Cation transporter/ATPase, N-terminus
115111156dUTPase
49584434Aconitase C-terminal domain
43333319Amino acid kinase family
1111116N-(5'phosphoribosyl)anthranilate (PRA) isomerase
213946236Acyl transferase domain
1111116Urease beta subunit
34332217Dihydrodipicolinate synthetase family
314138122728177haloacid dehalogenase-like hydrolase
24112111Glycosyl hydrolases family 2
2218191010887Glycosyl hydrolases family 18
1111116Proliferating cell nuclear antigen, N-terminal domain
11Translation initiation factor IF-3, C-terminal domain
112Acylphosphatase
1111116Adenylosuccinate synthetase
1111116Asparaginase, N-terminal
34321316Peptidase S24-like
1112117Inorganic pyrophosphatase
1154105944Glycosyl hydrolases family 16
35434221Glycosyl hydrolases family 15
304724201312146NADH:flavin oxidoreductase / NADH oxidase family
11111273-hydroxyacyl-CoA dehydrogenase, C-terminal domain
13546221Glycosyl hydrolase family 20, catalytic domain
66555532HhH-GPD superfamily base excision DNA repair protein
1311118AIR carboxylase
218343192330219GMC oxidoreductase
23222213Asparagine synthase
82727122120115Fungal cellulose binding domain
77666537Septin
1111116EF-1 guanine nucleotide exchange domain
1111116Homoserine dehydrogenase
391063738Flavin-binding monooxygenase-like
37423322tRNA synthetases class I (E and Q), catalytic domain
2111117tRNA synthetases class I (R)
66955637XPG N-terminal domain
1211148141372Metallo-beta-lactamase superfamily
11114F5/8 type C domain
45474428Choline/Carnitine o-acyltransferase
1111116Putative esterase
1111116Glycosyl hydrolase family 9
1111116Ferrochelatase
22222212Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
1111116Arginosuccinate synthase
111115Electron transfer flavoprotein FAD-binding domain
11Ezrin/radixin/moesin family
33333318RNB domain
87425531Dioxygenase
57334729CNH domain
23221212Diacylglycerol kinase catalytic domain
16161411111684Dual specificity phosphatase, catalytic domain
1121117MyTH4 domain
46332321P21-Rho-binding domain
13151713121383PX domain
65233221Ras association (RalGDS/AF-6) domain
44533423UBX domain
54855431VHS domain
111115Phosphoinositide 3-kinase C2
23322214DAHP synthetase I family
411435532Carbon-nitrogen hydrolase
2417N-acetyltransferase
11114Prephenate dehydratase
55634225Syntaxin
55754632Pumilio-family RNA binding repeat
713667746Histone-like transcription factor (CBF/NF-Y) and archaeal histone
1211117Pterin binding enzyme
2111218ER lumen protein retaining receptor
23231213Glycoprotease family
1111116Histidinol dehydrogenase
33343420impB/mucB/samB family
111115
1111116Ribosomal L15
1113129Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
121116Ribosomal prokaryotic L21 protein
111115Ribosomal L28 family
1111116Ribosomal L29 protein
112116Ribosomal L39 protein
1111116Ribosomal S17
1111116Ribulose-phosphate 3 epimerase family
1111116Translationally controlled tumour protein
59435228Glycosyl hydrolase family 7
27223319RNA pseudouridylate synthase
96878745Histone deacetylase domain
310622225POT family
12222211PWWP domain
222815151517112SET domain
67667436Isochorismatase family
25222417Permease family
1121117Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
61814861264XPG I-region
11115110Acetokinase family
2111128DNA photolyase
111115Cation-independent mannose-6-phosphate receptor repeat
336Nitroreductase family
14111210Cytosol aminopeptidase family, catalytic domain
4116Sulfatase
11111166,7-dimethyl-8-ribityllumazine synthase
111115Ribosomal protein S16
33333318Acyl CoA binding protein
78554433Cullin family
1111116Elongation factor TS
46339429FAD binding domain
10162712927101O-methyltransferase domain
55524324EamA-like transporter family
2333213
78758742ThiF family
1111116Ribosomal family S4e
13212211Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
35222216Ammonium Transporter Family
35443524Sulfate permease family
1111116MATH domain
11Uncharacterized protein family UPF0004
23222314Dehydratase family
211221119Transaldolase/Fructose-6-phosphate aldolase
53333421Mechanosensitive ion channel
1112117GTP cyclohydrolase II
151111103,4-dihydroxy-2-butanone 4-phosphate synthase
44534424Adaptor complexes medium subunit family
889581149Exonuclease
1111116Dipeptidyl peptidase IV (DPP IV) N-terminal region
325NB-ARC domain
7208414861Glycosyl hydrolase family 3 N terminal domain
211116Ribosomal protein L44
11Sodium:sulfate symporter transmembrane region
1211117DNA-dependent RNA polymerase
1111116Glycosyl transferase family 4
1112117HCO3- transporter family
22222212Nucleosome assembly protein (NAP)
44414421Synaptobrevin
111115GMP synthase C terminal domain
35314521Adenosine/AMP deaminase
35655327Oxidoreductase FAD-binding domain
33332115Thioesterase domain
22222212Histidine biosynthesis protein
35343321Glycosyltransferase family 20
1111116UDP-glucose/GDP-mannose dehydrogenase family, central domain
22222212Carbamoyl-phosphate synthase small chain, CPSase domain
1113PAS fold
23222314Probable molybdopterin binding domain
44444424Sec1 family
22222212GDP dissociation inhibitor
69776641Sodium/hydrogen exchanger family
23322214RNA polymerase Rpb3/RpoA insert domain
33454423Initiation factor 2 subunit family
11114PQQ enzyme repeat
22221211Electron transfer flavoprotein domain
112116Uricase
1111116Ribosomal S3Ae family
1111116Ribosomal L27 protein
1111116GTP1/OBG
39233323Gamma-glutamyltranspeptidase
112Ribosomal L40e family
1111116GrpE
35522320TatD related DNase
1112117Inhibitor of apoptosis-promoting Bax1
1111116Eukaryotic DNA topoisomerase I, catalytic core
464122735Dynamin central region
11113296-O-methylguanine DNA methyltransferase, DNA binding domain